Developing a Systematic Sampling Method for Earthworms in and Around Deadwood Frank Ashwood1* , Elena I
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Annelida, Lumbricidae) - Description Based on Morphological and Molecular Data
A new earthworm species within a controversial genus: Eiseniona gerardoi sp. n. (Annelida, Lumbricidae) - description based on morphological and molecular data The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Díaz Cosín, Darío J., Marta Novo, Rosa Fernández, Daniel Fernández Marchán, and Mónica Gutiérrez. 2014. “A new earthworm species within a controversial genus: Eiseniona gerardoi sp. n. (Annelida, Lumbricidae) - description based on morphological and molecular data.” ZooKeys (399): 71-87. doi:10.3897/zookeys.399.7273. http:// dx.doi.org/10.3897/zookeys.399.7273. Published Version doi:10.3897/zookeys.399.7273 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:12406906 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA A peer-reviewed open-access journal ZooKeys 399: A71–87 new (2014) earthworm species within a controversial genus: Eiseniona gerardoi sp. n... 71 doi: 10.3897/zookeys.399.7273 RESEARCH ARTICLE www.zookeys.org Launched to accelerate biodiversity research A new earthworm species within a controversial genus: Eiseniona gerardoi sp. n. (Annelida, Lumbricidae) - description based on morphological and molecular data Darío J. Díaz Cosín1,†, Marta Novo1,2,‡, Rosa Fernández1,3,§, Daniel Fernández Marchán1,|, Mónica Gutiérrez1,¶ 1 -
Taxonomic Assessment of Lumbricidae (Oligochaeta) Earthworm Genera Using DNA Barcodes
European Journal of Soil Biology 48 (2012) 41e47 Contents lists available at SciVerse ScienceDirect European Journal of Soil Biology journal homepage: http://www.elsevier.com/locate/ejsobi Original article Taxonomic assessment of Lumbricidae (Oligochaeta) earthworm genera using DNA barcodes Marcos Pérez-Losada a,*, Rebecca Bloch b, Jesse W. Breinholt c, Markus Pfenninger b, Jorge Domínguez d a CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Campus Agrário de Vairão, 4485-661 Vairão, Portugal b Biodiversity and Climate Research Centre, Lab Centre, Biocampus Siesmayerstraße, 60323 Frankfurt am Main, Germany c Department of Biology, Brigham Young University, Provo, UT 84602-5181, USA d Departamento de Ecoloxía e Bioloxía Animal, Universidade de Vigo, E-36310, Spain article info abstract Article history: The family Lumbricidae accounts for the most abundant earthworms in grasslands and agricultural Received 26 May 2011 ecosystems in the Paleartic region. Therefore, they are commonly used as model organisms in studies of Received in revised form soil ecology, biodiversity, biogeography, evolution, conservation, soil contamination and ecotoxicology. 14 October 2011 Despite their biological and economic importance, the taxonomic status and evolutionary relationships Accepted 14 October 2011 of several Lumbricidae genera are still under discussion. Previous studies have shown that cytochrome c Available online 30 October 2011 Handling editor: Stefan Schrader oxidase I (COI) barcode phylogenies are informative at the intrageneric level. Here we generated 19 new COI barcodes for selected Aporrectodea specimens in Pérez-Losada et al. [1] including nine species and 17 Keywords: populations, and combined them with all the COI sequences available in Genbank and Briones et al. -
Study on the Biomass and Productivity of Lumbricidae Populations in the Deciduous Ecosystem
Muzeul Olteniei Craiova. Oltenia. Studii úi comunicări. ùtiinĠele Naturii. Tom. 28, No. 2/2012 ISSN 1454-6914 STUDY ON THE BIOMASS AND PRODUCTIVITY OF LUMBRICIDAE POPULATIONS IN THE DECIDUOUS ECOSYSTEM BRÎNZEA GheorghiĠa Abstract. The present study analyses the earthworms in the deciduous ecosystem (Ruginoasa Station) of Cândeúti Platform, in the south-east of Arge܈ County, in terms of biomass and monthly productivity during March-October 2007. Besides numerical dominance, the biomass of Lumbricidae species highlights the role of each species in the activity of matter and energy transfer within an ecosystem. The special dynamics of the two parameters showed different values, given the structure of the vegetation, soil and soil layers, and especially the differences between the individual weights of the species. Octolasion lacteum species was dominant in terms of biomass density and recorded high values at the soil levels analysed, except in the litter. Of the total calculated biomass (27.598 mg d.s./square meter), this species dominates in a ratio of 74.69%. Biological productivity was increased at 0-10 cm, with the highest value for Octolasion lacteum species (4.03 mg d.s./m2), followed by Eisenia lucens species (0.9 mg d.s./m2) and Aporrectodea rosea rosea species (0.641 mg d.s./m2 ). Also, the highest values of the biomass were recorded in spring and autumn months. The species with a lower numerical density recorded low values of the biomass, leading to low biological productivity and vice versa. Keywords: deciduous forest, lumbricidae, biomass, productivity. Rezumat. Studiu privind biomasa úi productivitatea populaĠiilor de Lumbricidae într-un ecosistem de foioase. -
Study of Phylogenetic Tree and Morphology of Aporrectodea Based on Mitochondrial Marker (16S Rrna Gene) in Some Area South of Baghdad/ Iraq
Iraqi Journal of Biotechnology, 2015, Vol. 14, No. 2 , 47-54 Study of Phylogenetic Tree and Morphology of Aporrectodea Based on Mitochondrial Marker (16S rRNA gene) in Some Area South of Baghdad/ Iraq Najwa Sh. Ahmed1, Nebrass Faleh Chacain2, Falih Hamzah Edan3,Saad M. Nada1, Anas Noori Ibraheem1 1Biotechnology Research Center, AL-Nahrain University, Baghdad 2 Biology dep., College of Science, AL-Mustansiriyah University 3 Research and Development Directorate Received: April 19, 2015 / Accepted: October 11, 2015 Abstract: This study aimed to show the phylogenetic structure of Aporrectodea genus in order to verify its cladistics nature and its taxonomic validity. In this work, collection of Aporrectodea genus from three locations from South of Baghdad, (AL-Karrada, AL-Zafranya and New Baghdad) are studied. First, we used usual morphological characteristics to identify each species than molecular phylogenetic analyses are based on the sequences of mitochondrial 16S rRNA gene regions and used software MEGA6 and Raptorx software. Rresults of the two methods (MEGA 6 and Raptorx software) were cluster groups (organisms of 8 sample from Group1A and Group3) in one group and with distance equal to 0.006, clustering of group 2 as a single group, and reached the highest value between group 2 and group 1(B) with distance equal to 0.272 and to move away genetic traits, Raptorx software, conformation of protein for 16SrRNA appeared as a result of the similarity of Mega6. The marker mitochondrial 16S rRNA gene is a powerful tool for identifying species of earthworms and provides a useful complement to traditional morphological taxonomy. Key words: 16S rRNA, Aporrectodea, Raptorx software. -
Impact of Agricultural Practices on Biodiversity of Soil Invertebrates
Impact of Agricultural Practices on Biodiversity of Soil Invertebrates Impact of • Stefano Bocchi and Francesca Orlando Agricultural Practices on Biodiversity of Soil Invertebrates Edited by Stefano Bocchi and Francesca Orlando Printed Edition of the Special Issue Published in Agronomy www.mdpi.com/journal/agronomy Impact of Agricultural Practices on Biodiversity of Soil Invertebrates Impact of Agricultural Practices on Biodiversity of Soil Invertebrates Editors Stefano Bocchi Francesca Orlando MDPI • Basel • Beijing • Wuhan • Barcelona • Belgrade • Manchester • Tokyo • Cluj • Tianjin Editors Stefano Bocchi Francesca Orlando University of Milan University of Milan Italy Italy Editorial Office MDPI St. Alban-Anlage 66 4052 Basel, Switzerland This is a reprint of articles from the Special Issue published online in the open access journal Agronomy (ISSN 2073-4395) (available at: https://www.mdpi.com/journal/agronomy/special issues/Soil Invertebrates). For citation purposes, cite each article independently as indicated on the article page online and as indicated below: LastName, A.A.; LastName, B.B.; LastName, C.C. Article Title. Journal Name Year, Volume Number, Page Range. ISBN 978-3-03943-719-1 (Hbk) ISBN 978-3-03943-720-7 (PDF) Cover image courtesy of Valentina Vaglia. c 2020 by the authors. Articles in this book are Open Access and distributed under the Creative Commons Attribution (CC BY) license, which allows users to download, copy and build upon published articles, as long as the author and publisher are properly credited, which ensures maximum dissemination and a wider impact of our publications. The book as a whole is distributed by MDPI under the terms and conditions of the Creative Commons license CC BY-NC-ND. -
Appendix 5.3 MON 810 Literature Review – List of All Hits (June 2016
Appendix 5.3 MON 810 literature review – List of all hits (June 2016-May 2017) -Web of ScienceTM Core Collection database 12/8/2016 Web of Science [v.5.23] Export Transfer Service Web of Science™ Page 1 (Records 1 50) [ 1 ] Record 1 of 50 Title: Ground beetle acquisition of Cry1Ab from plant and residuebased food webs Author(s): Andow, DA (Andow, D. A.); Zwahlen, C (Zwahlen, C.) Source: BIOLOGICAL CONTROL Volume: 103 Pages: 204209 DOI: 10.1016/j.biocontrol.2016.09.009 Published: DEC 2016 Abstract: Ground beetles are significant predators in agricultural habitats. While many studies have characterized effects of Bt maize on various carabid species, few have examined the potential acquisition of Cry toxins from live plants versus plant residue. In this study, we examined how live Bt maize and Bt maize residue affect acquisition of Cry1Ab in six species. Adult beetles were collected live from fields with either currentyear Bt maize, oneyearold Bt maize residue, twoyearold Bt maize residue, or fields without any Bt crops or residue for the past two years, and specimens were analyzed using ELISA. Observed Cry1Ab concentrations in the beetles were similar to that reported in previously published studies. Only one specimen of Cyclotrachelus iowensis acquired Cry1Ab from twoyearold maize residue. Three species acquired Cry1Ab from fields with either live plants or plant residue (Cyclotrachelus iowensis, Poecilus lucublandus, Poecilus chalcites), implying participation in both liveplant and residuebased food webs. Two species acquired toxin from fields with live plants, but not from fields with residue (Bembidion quadrimaculatum, Elaphropus incurvus), suggesting participation only in live plantbased food webs. -
French Mediterranean Islands As a Refuge of Relic Earthworm Species: Cataladrilus Porquerollensis Sp
European Journal of Taxonomy 701: 1–22 ISSN 2118-9773 https://doi.org/10.5852/ejt.2020.701 www.europeanjournaloftaxonomy.eu 2020 · Marchán D.F. et al. This work is licensed under a Creative Commons Attribution License (CC BY 4.0). Research article urn:lsid:zoobank.org:pub:D9291955-F619-46EA-90E1-DA756D1B7C55 French Mediterranean islands as a refuge of relic earthworm species: Cataladrilus porquerollensis sp. nov. and Scherotheca portcrosana sp. nov. (Crassiclitellata, Lumbricidae) Daniel F. MARCHÁN 1,3,*, Thibaud DECAËNS 2,*, Darío J. DÍAZ COSÍN 3, Mickaël HEDDE 4, Emmanuel LAPIED 5 & Jorge DOMÍNGUEZ 6 1,6 Grupo de Ecoloxía Animal (GEA), Universidade de Vigo, E-36310 Vigo, Spain. 2 CEFE, Univ Montpellier, CNRS, EPHE, IRD, Univ Paul Valéry Montpellier 3, Montpellier, France. 3 Department of Biodiversity, Ecology and Evolution, Faculty of Biology, Universidad Complutense de Madrid, Madrid, Spain. 4 UMR Eco&Sols, INRAE–IRD–CIRAD–SupAgro Montpellier, 2 Place Viala, 34060 Montpellier Cedex 2, France. 5 Taxonomia Biodiversity Fund, 7 rue Beccaria, 72012, Paris, France. * Corresponding authors: [email protected]; [email protected] 3 Email: [email protected] 4 Email: [email protected] 5 Email: [email protected] 6 Email: [email protected] 1 urn:lsid:zoobank.org:author:3B3731B6-B5FB-409A-A7A3-99FD0F96D688 2 urn:lsid:zoobank.org:author:B61F61B2-3012-4526-8FF9-DC94D372AF77 3 urn:lsid:zoobank.org:author:38538B17-F127-4438-9DE2-F9D6C597D044 4 urn:lsid:zoobank.org:author:F4A219F7-7E75-4333-8293-3004B3CD62C5 5 urn:lsid:zoobank.org:author:B1FB8658-DFC3-481C-A0BE-B8488A018611 6 urn:lsid:zoobank.org:author:167575D5-D2CC-4B37-8B1D-0233E6B154E5 Abstract. -
Annelida, Lumbricidae) - Description Based on Morphological and Molecular Data
A peer-reviewed open-access journal ZooKeys 399: A71–87 new (2014) earthworm species within a controversial genus: Eiseniona gerardoi sp. n... 71 doi: 10.3897/zookeys.399.7273 RESEARCH ARTICLE www.zookeys.org Launched to accelerate biodiversity research A new earthworm species within a controversial genus: Eiseniona gerardoi sp. n. (Annelida, Lumbricidae) - description based on morphological and molecular data Darío J. Díaz Cosín1,†, Marta Novo1,2,‡, Rosa Fernández1,3,§, Daniel Fernández Marchán1,|, Mónica Gutiérrez1,¶ 1 Departamento de Zoología y Antropología Física, Facultad de Biología, Universidad Complutense de Madrid, C/ José Antonio Nováis 2, 28040, Madrid, Spain 2 Cardiff School of Biosciences, Cardiff University, BIOSI 1, Museum Avenue, Cardiff CF10, 3TL, UK3 Museum of Comparative Zoology, Department of Organismic and Evolutionary Biology, Harvard University, 26 Oxford Street, Cambridge, MA 02138, USA † http://zoobank.org/38538B17-F127-4438-9DE2-F9D6C597D044 ‡ http://zoobank.org/79DA5419-91D5-4EAB-BC72-1E46F10C716A § http://zoobank.org/99618966-BB50-4A01-8FA0-7B1CC31686B6 | http://zoobank.org/CAB83B57-ABD1-40D9-B16A-654281D71D58 ¶ http://zoobank.org/E1A7E77A-9CD5-4D67-88A3-C7F65AD6A5BE Corresponding author: Darío J. Díaz Cosín ([email protected]) Academic editor: R. Blakemore | Received 17 February 2014 | Accepted 25 March 2014 | Published 9 April 2014 http://zoobank.org/F5AC3116-E79E-4442-9B26-2765A5243D5E Citation: Cosín DJD, Novo M, Fernández R, Marchán DF, Gutiérrez M (2014) A new earthworm species within a controversial genus: Eiseniona gerardoi sp. n. (Annelida, Lumbricidae) - description based on morphological and molecular data. ZooKeys 399: 71–87. doi: 10.3897/zookeys.399.7273 Abstract The morphological and anatomical simplicity of soil dwelling animals, such as earthworms, has limited the establishment of a robust taxonomy making it sometimes subjective to authors’ criteria. -
Earthworms Diversity (Oligochaeta: Lumbricidae) and Casting Chemical Composition in an Urban Park from Western Romania
Pol. J. Environ. Stud. Vol. 30, No. 1 (2021), 645-654 DOI: 10.15244/pjoes/123187 ONLINE PUBLICATION DATE: 2020-09-02 Original Research Earthworms Diversity (Oligochaeta: Lumbricidae) and Casting Chemical Composition in an Urban Park from Western Romania Mădălina Iordache1*, Clara Tudor2, Liliana Brei2 1University of Agricultural Sciences and Veterinary Medicine of Banat “King Michael the Ist of Romania”, Faculty of Agriculture, Calea Aradului Street, No. 119, 300645 Timişoara, Romania Department of Sustainable Development and Environmental Engineering, 2Office for Pedological and Agrochemical Studies Timis County, Calea Aradului Street No. 119, 300645 Timisoara, Romania Received: 25 January 2020 Accepted: 31 May 2020 Abstract This paper aimed to establish the species diversity of earthworms (Oligochaeta: Lumbricidae) and the chemical composition of earthworm surface castings within an urban park from west side of Romania (Timişoara City): Plevnei Park (45°44’58’’N, 21°13’38’’E). Eight lumbricid earthworm species have been identified: Lumbricus terrestris, Aporrectodea rosea, Aporrectodea longa, Aporrectodea caliginosa, Allolobophora chlorotica, Dendrobaena veneta, Dendrobaena octaedra, Dendrodrilus rubidus. Based on species incidence, several ecological indicators have been calculated: the constancy of earthworm species in the sampling areas, the Sørensen similarity of sampling points as species composition, and the Jaccard similarity (coenotic affinity) of the earthworm species within the sampled points. The surface castings have been -
This Is an Open Access Document Downloaded from ORCA, Cardiff University's Institutional Repository
This is an Open Access document downloaded from ORCA, Cardiff University's institutional repository: http://orca.cf.ac.uk/96345/ This is the author’s version of a work that was submitted to / accepted for publication. Citation for final published version: Spurgeon, D. J., Liebeke, M., Anderson, C., Kille, Peter, Lawlor, A., Bundy, J. G. and Lahive, E. 2016. Ecological drivers influence the distributions of two cryptic lineages in an earthworm morphospecies. Applied Soil Ecology 108 , pp. 8-15. 10.1016/j.apsoil.2016.07.013 file Publishers page: http://dx.doi.org/10.1016/j.apsoil.2016.07.013 <http://dx.doi.org/10.1016/j.apsoil.2016.07.013> Please note: Changes made as a result of publishing processes such as copy-editing, formatting and page numbers may not be reflected in this version. For the definitive version of this publication, please refer to the published source. You are advised to consult the publisher’s version if you wish to cite this paper. This version is being made available in accordance with publisher policies. See http://orca.cf.ac.uk/policies.html for usage policies. Copyright and moral rights for publications made available in ORCA are retained by the copyright holders. *Manuscript Click here to download Manuscript: Spurgeon et al_v1_APSOIL-S-16-00346_R1_Final.docxClick here to view linked References 1 Ecological drivers influence the distributions of two cryptic 2 lineages in an earthworm morphospecies 3 4 5 6 David J. Spurgeon*1, Manuel Liebeke2*, Craig Anderson1,3, Peter Kille4, Alan Lawlor5, Jacob 7 G. Bundy2, Elma -
Ecological Functions of Earthworms in Soil
Ecological functions of earthworms in soil Walter S. Andriuzzi Thesis committee Promotors Prof. Dr L. Brussaard Professor of Soil Biology and Biological Soil Quality Wageningen University Prof. Dr T. Bolger Professor of Zoology University College Dublin, Republic of Ireland Co-promotors Dr O. Schmidt Senior Lecturer University College Dublin, Republic of Ireland Dr J.H. Faber Senior Researcher and Team leader Alterra Other members Prof. Dr W.H. van der Putten, Wageningen University Prof. Dr J. Filser, University of Bremen, Germany Dr V. Nuutinen, Agrifood Research Finland, Jokioinen, Finland Dr P. Murphy, University College Dublin, Republic of Ireland This research was conducted under the auspices of University College Dublin and the C. T. De Wit Graduate School for Production Ecology and Resource Conservation following a Co-Tutelle Agreement between University College Dublin and Wageningen University. Ecological functions of earthworms in soil Walter S. Andriuzzi Thesis submitted in fulfilment of the requirements for the degree of doctor at Wageningen University by the authority of the Rector Magnificus Prof. Dr A.P.J. Mol, in the presence of the Thesis Committee appointed by the Academic Board to be defended in public on Monday 31 August 2015 at 4 p.m. in the Aula. Walter S. Andriuzzi Ecological functions of earthworms in soil 154 pages. PhD thesis, Wageningen University, Wageningen, NL (2015) With references, with summary in English ISBN 978-94-6257-417-5 Abstract Earthworms are known to play an important role in soil structure and fertility, but there are still big knowledge gaps on the functional ecology of distinct earthworm species, on their own and in interaction with other species. -
Metallothionein 2 and Heat Shock Protein 72 Protect Allolobophora
Arch Environ Contam Toxicol DOI 10.1007/s00244-016-0276-6 Metallothionein 2 and Heat Shock Protein 72 Protect Allolobophora chlorotica from Cadmium But Not Nickel or Copper Exposure: Body Malformation and Coelomocyte Functioning 1 2 1 Joanna Homa • Stephen R. Stu¨rzenbaum • Elzbieta Kolaczkowska Received: 7 December 2015 / Accepted: 18 March 2016 Ó The Author(s) 2016. This article is published with open access at Springerlink.com Abstract Earthworms serve as good indicators of heavy Jalilvand 2008). Likewise, when the well-being of earth- metal contamination due to their innate sensitivity towards worms is impaired, for example due to soil contamination, soil pollution. However, to date, not many studies have with pesticides or heavy metals, important soil functions focused on endogeic earthworms, such as the omnipresent can be compromised (Calisi et al. 2014; Giska et al. 2014; Allolobophora chlorotica. The current study was designed to Leita˜o et al. 2014). For this reason, earthworms are envi- verify whether this earthworm could serve as a novel dis- ronmental sentinels and biological indicators of soil quality tinctively susceptible species for environmental contamina- and pollution. The earthworm coelomic cavity contains tion studies. We show that the dermal exposure to Cu, Ni, coelomocytes, immunocompetent cells classified as and Cd affected the mortality and morphology of A. amoebocytes, and eleocytes/chloragocytes (Engelmann chlorotica, and the number and functioning of coelomocytes. et al. 2004; Kurek et al. 2007). Whilst amoebocytes can These features particularly were pronounced in animals recognize foreign materials (e.g., pathogens) and are treated with Ni and Cu and interestingly to a lesser extend involved in phagocytosis and encapsulation (Cossarizza with Cd.