Agarose-Based Biomaterials: Opportunities and Challenges in Cartilage Tissue Engineering

Total Page:16

File Type:pdf, Size:1020Kb

Agarose-Based Biomaterials: Opportunities and Challenges in Cartilage Tissue Engineering polymers Review Agarose-Based Biomaterials: Opportunities and Challenges in Cartilage Tissue Engineering 1, 1, 1 1 Mohammad Amin Salati y, Javad Khazai y , Amir Mohammad Tahmuri , Ali Samadi , Ali Taghizadeh 2, Mohsen Taghizadeh 2, Payam Zarrintaj 3,* , Josh D. Ramsey 3, Sajjad Habibzadeh 4, Farzad Seidi 5, Mohammad Reza Saeb 6,* and Masoud Mozafari 7,* 1 Polymer Engineering Department, Faculty of Engineering, Urmia University, Urmia 5756151818, Iran; [email protected] (M.A.S.); [email protected] (J.K.); [email protected] (A.M.T.); [email protected] (A.S.) 2 Center of Excellence in Electrochemistry, School of Chemistry, College of Science, University of Tehran, Tehran 11155-4563, Iran; [email protected] (A.T.); [email protected] (M.T.) 3 School of Chemical Engineering, Oklahoma State University, 420 Engineering North, Stillwater, OK 74078, USA; [email protected] 4 Department of Chemical Engineering, Amirkabir University of Technology (Tehran Polytechnic), Tehran 1591639675, Iran; [email protected] 5 Provincial Key Lab of Pulp and Paper Science and Technology and Joint International Research Lab of Lignocellulosic Functional Materials, Nanjing Forestry University, Nanjing 210037, China; [email protected] 6 Department of Resin and Additives, Institute for Color Science and Technology, Tehran P.O. Box 16765-654, Iran 7 Department of Tissue Engineering and Regenerative Medicine, Faculty of Advanced Technologies in Medicine, Iran University of Medical Sciences, Tehran 144961-4535, Iran * Correspondence: [email protected] (P.Z.); [email protected] (M.R.S.); [email protected] (M.M.) These authors contributed equally to this work. y Received: 29 March 2020; Accepted: 2 May 2020; Published: 18 May 2020 Abstract: The lack of adequate blood/lymphatic vessels as well as low-potential articular cartilage regeneration underlines the necessity to search for alternative biomaterials. Owing to their unique features, such as reversible thermogelling behavior and tissue-like mechanical behavior, agarose-based biomaterials have played a key role in cartilage tissue repair. Accordingly, the need for fabricating novel highly efficient injectable agarose-based biomaterials as hydrogels for restoration of injured cartilage tissue has been recognized. In this review, the resources and conspicuous properties of the agarose-based biomaterials were reviewed. First, different types of signals together with their functionalities in the maintenance of cartilage homeostasis were explained. Then, various cellular signaling pathways and their significant role in cartilage tissue engineering were overviewed. Next, the molecular structure and its gelling behavior have been discussed. Eventually, the latest advancements, the lingering challenges, and future ahead of agarose derivatives from the cartilage regeneration perspective have been discussed. Keywords: agarose; biomaterials; hydrogels; cartilage; tissue engineering; regenerative medicine 1. Introduction Millions of people in the world are suffering from articular cartilage diseases (ACD) and its side effects, such as anterior cruciate ligament (ACL) and osteochondral defects (OCD). It is expected that OCD will be the principal reason for incapacity in the next decades, with 35% of the population affected. Polymers 2020, 12, 1150; doi:10.3390/polym12051150 www.mdpi.com/journal/polymers Polymers 2020, 12, 1150 2 of 15 The occurrence of OCD depends on age, gender, and environmental conditions. Although treating the defects using surgeries is promising, cartilage regeneration remains as a post-surgery complication because of its structural complexity and low metabolic performance [1,2]. Furthermore, the long-term healing period of internal articular cartilage demands new strategies for repairing cartilage without surgery [3]. Tissue engineering is an interdisciplinary branch of science for designing and implementing novel treatment strategies based on natural/synthetic materials along with cell and therapeutic agents to treat the injured tissues [4–6]. Tissue engineering has opened a promising path to regenerate the cartilage using modified natural/synthetic biomacromolecules. The first step in material selection for tissue Polymers 2020, 12, x FOR PEER REVIEW 2 of 16 engineeringthe is thelong-term tissue healing recapitulation period of internal by the selectedarticular cartilage scaffold demands [7–9]. new Therefore, strategies the for mechanicalrepairing behavior of the intendedcartilage material without shouldsurgery [3]. match with its nearby cartilage in order to keep its function [10,11]. Tissue engineering is an interdisciplinary branch of science for designing and implementing Biopolymersnovel such treatment as chitosan strategies [12 based,13], on alginate natural/synthetic [14,15], materials gelatin along [16,17 with], and cell and agarose therapeutic [18] agents have been widely used for tissueto treat engineering the injured tissues [19,20 [4]– because6]. Tissue engineering of their proper has opened biocompatibility, a promising path controllableto regenerate the degradability, and tissue-mimickingcartilage using performance. modified natural/synthetic biomacromolecules. The first step in material selection for Agarosetissue has engineering been used is the vastly tissue reca inpitulation biomedical by theapplications selected scaffold because[7–9]. Therefore, of its the controlled mechanical self-gelling behavior of the intended material should match with its nearby cartilage in order to keep its function properties,[10,11 water-solubility,]. Biopolymers such adjustable as chitosan mechanical[12,13], alginate properties,[14,15], gelatin [16,17 and] non-immunogenic, and agarose [18] have properties. Agarose, basedbeen widely on its used stiff forness tissue and engineering functional [19,20] groups, because of cantheir supportproper biocompatibilit cellular adhesion,y, controllable proliferation, and activity.degradability, Agarose and has tissue adjustable-mimicking water performance adsorption. capacity, which provides the cells with a Agarose has been used vastly in biomedical applications because of its controlled self-gelling suitable microenvironmentproperties, water-solubility, for cellular adjustable activity mechanical [21]. Agarose-basedproperties, and non-immunogenic hydrogels have properties. considerably been utilized in theAgarose, investigation based on its of stiffness mechanical and functional load reaction groups, can for support chondrocytes cellular adhesion, and mesenchymal proliferation, stem cells (MSCs) [22].and Agarose activity. hasAgarose acquired has adjustable a wide water range adsorption of applications capacity, which such provides as drug the delivery cells with [a23 ,24], cancer suitable microenvironment for cellular activity [21]. Agarose-based hydrogels have considerably therapy [25,26been], tissueutilized engineering in the investigation and regenerativeof mechanical load medicine reaction [for27 –chondrocytes30], and disease and mesenchymal diagnosis, controlling, and treatmentstem [ 31cells–33 (MS].Cs) It has[22]. beenAgarose utilized has acquired in various a wide range tissue of engineeringapplications such applications, as drug delivery including the neural system[23,24], [34 cancer], bone therapy formation [25,26], tissue [35], engineering cardiac regeneration,and regenerative woundmedicine [27 healing,–30], and and disease attachment to diagnosis, controlling, and treatment [31–33]. It has been utilized in various tissue engineering tissues suchapplications, as skin [36 including], brain [the37 ],neural and system cornea. [34], The bone properties formation [35], of agarose cardiac regeneration, are tunable wound by concentration, functionalization,healing, andand attachment blending to to tissues mimic such the as skin desired [36], brain tissue [37], performance. and cornea. The properties Figure1 ofexhibits agarose the agarose gel performanceare tunable for various by concentration, tissues and functionalization, cells. and blending to mimic the desired tissue performance. Figure 1 exhibits the agarose gel performance for various tissues and cells. Figure 1. AdjustableFigure 1. Adjustable features features of agarose of agarose can can result result in in flexible flexible characteristics characteristics similar to similar cells and to tissues. cells and tissues. Here, the conductivity and Young’s modulus of agarose-based biomaterials are patterned. Reprinted Here, the conductivitywith permission and from Young’s [18]. modulus of agarose-based biomaterials are patterned. Reprinted with permission from [18]. 2. Cartilage Types, Properties, and Formation Cartilage is a smooth elastic tissue, which covers the end of bones at the joints and protects them against mechanical stresses. There are three types of cartilage: articular (hyaline), fibrous, and elastic [38,39]. Heterotypic collagen II/IX/XI fibrils and proteoglycan–glycosaminoglycan networks Polymers 2020, 12, 1150 3 of 15 Polymers 2020, 12, x FOR PEER REVIEW 3 of 16 of aggrecan2. and Cartilage hyaluronan Types, Properties are the, and dominant Formation structures of the cartilage extracellular matrix (ECM). Hyaline is an elastic,Cartilage flexible, is a smooth and elastic wear-resistant tissue, which covers tissue the end that of isbones accessible at the joints inside and protects the joint them to carry and against mechanical stresses. There are three types of cartilage: articular (hyaline), fibrous, and elastic disrupt the weight.[38,39].
Recommended publications
  • Agarose Gel Electrophoresis
    Laboratory for Environmental Pathogen Research Department of Environmental Sciences University of Toledo Agarose gel electrophoresis Background information Agarose gel electrophoresis of DNA is used to determine the presence and distinguish the type of nucleic acids obtained after extraction and to analyze restriction digestion products. Desired DNA fragments can be physically isolated for various purposes such as sequencing, probe preparation, or for cloning fragments into other vectors. Both agarose and polyacrylamide gels are used for DNA analysis. Agarose gels are usually run to size larger fragments (greater than 200 bp) and polyacrylamide gels are run to size fragments less than 200 bp. Typically agarose gels are used for most purposes and polyacrylamide gels are used when small fragments, such as digests of 16S rRNA genes, are being distinguished. There are also specialty agaroses made by FMC (e.g., Metaphor) for separating small fragments. Regular agarose gels may range in concentration from 0.6 to 3.0%. Pouring gels at less or greater than these percentages presents handling problems (e.g., 0.4% agarose for genomic DNA partial digests requires a layer of supporting 0.8% gel). For normal samples make agarose gels at 0.7%. The chart below illustrates the optimal concentrations for fragment size separation. The values listed are approximate and can vary depending on the reference that is used. If you do not know your fragment sizes then the best approach is to start with a 0.7% gel and change subsequently if the desired separation is not achieved. Nucleic acids must be stained prior to visualization. Most laboratories use ethidium bromide but other stains (e.g., SYBR green, GelStar) are available.
    [Show full text]
  • Development and Optimization of Organic Based Monoliths for Use in Affinity Chromatography
    University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Student Research Projects, Dissertations, and Theses - Chemistry Department Chemistry, Department of Winter 12-2-2011 Development and Optimization of Organic Based Monoliths for Use in Affinity Chromatography Erika L. Pfaunmiller University of Nebraska-Lincoln, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/chemistrydiss Part of the Analytical Chemistry Commons Pfaunmiller, Erika L., "Development and Optimization of Organic Based Monoliths for Use in Affinity Chromatography" (2011). Student Research Projects, Dissertations, and Theses - Chemistry Department. 28. https://digitalcommons.unl.edu/chemistrydiss/28 This Article is brought to you for free and open access by the Chemistry, Department of at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Student Research Projects, Dissertations, and Theses - Chemistry Department by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. DEVELOPMENT AND OPTIMIZATION OF ORGANIC BASED MONOLITHS FOR USE IN AFFINITY CHROMATOGRAPHY by Erika L. Pfaunmiller A THESIS Presented to the Faculty of The Graduate College at the University of Nebraska In Partial Fulfilment of Requirements For the Degree of Master of Science Major: Chemistry Under the Supervision of Professor David S. Hage Lincoln, Nebraska December, 2011 DEVELOPMENT AND OPTIMIZATION OF ORGANIC BASED MONOLITHS FOR USE IN AFFINITY CHROMATOGRAPHY Erika L. Pfaunmiller, M.S. University of Nebraska, 2011 Adviser: David S. Hage Affinity chromatography is an important and useful tool for studying biological interactions, such as the binding of an antibody with an antigen. Monolithic supports offer many advantages over traditional packed bed supports in affinity chromatography, including their ease of preparation, low back pressures and good mass transfer properties.
    [Show full text]
  • Biomems Literature by Year Prof
    BioMEMS Literature by Year Prof. Steven S. Saliterman 1. Xu M, Obodo D, Yadavalli VK. The design, fabrication, and applications of flexible bio- sensing devices. Biosensors & Bioelectronics. 2019;124:96-114. 2. Wongkaew N, Simsek M, Griesche C, Baeumner AJ. Functional Nanomaterials and Nanostructures Enhancing Electrochemical Biosensors and Lab-on-a-Chip Performances: Recent Progress, Applications, and Future Perspective. Chemical Reviews. 2019;119(1):120-194. 3. Wang MH, Yin HS, Zhou YL, et al. Photoelectrochemical biosensor for microRNA detec- tion based on a MoS2/g-C3N4/black TiO2 heterojunction with Histostar@AuNPs for signal amplification. Biosensors & Bioelectronics. 2019;128:137-143. 4. Wang JS, Hui N. Electrochemical functionalization of polypyrrole nanowires for the de- velopment of ultrasensitive biosensors for detecting microRNA. Sensors and Actuators B-Chemical. 2019;281:478-485. 5. Sun EWL, Martin AM, Young RL, Keating DJ. The Regulation of Peripheral Metabolism by Gut-Derived Hormones. Frontiers in Endocrinology. 2019;9. 6. Soler M, Huertas CS, Lechuga LM. Label-free plasmonic biosensors for point-of-care di- agnostics: a review. Expert Review of Molecular Diagnostics. 2019;19(1):71-81. 7. Soler M, Huertas CS, Lechuga LM. Label-free plasmonic biosensors for point-of-care di- agnostics: a review. Expert Review of Molecular Diagnostics. 2019;19(1):71-81. 8. Sola L, Damin F, Chiari M. Array of multifunctional polymers for localized immobilization of biomolecules on microarray substrates. Analytica Chimica Acta. 2019;1047:188-196. 9. Seidi S, Ranjbar MH, Baharfar M, Shanehsaz M, Tajik M. A promising design of microflu- idic electromembrane extraction coupled with sensitive colorimetric detection for col- orless compounds based on quantum dots fluorescence.
    [Show full text]
  • Product Specifications Agarose Hires Molecular Biology Grade
    Product Specifications Electrophoresis Reagents, Buffers, Agarose, Polymerase Chain Reaction Custom Primers and Probes Hybridization and Detection Reagents Agarose HiRes Molecular Biology Grade Store at Room Temperature Catalog Number Description Size 40-3015-10 Agarose HiRes Ultra Pure Molecular Biology Grade 100 gms 40-3015-50 Agarose HiRes Ultra Pure Molecular Biology Grade 500 gms 40-3015-01 Agarose HiRes Ultra Pure Molecular Biology Grade 1 KG Product Description & Application Agarose HiRes is certified Ultra Pure molecular biology grade DNase and RNase-free agarose powder. It is specifically recommended for resolution of short fragments ranging in size between 20 bp and 800 bp and is an excellent substitute for polyacrylamide electrophoresis for resolution of short DNA fragments. HiRes Agarose is commonly used for electrophoretic resolution of fragments obtained from amplification of short tandem repeats (STR’s), di, tri and tetra-nucleotide repeats, and other polymorphic loci. Specifications Appearance White homegeous powder Gel strength of 1.5 % (w/v) gel >1680g / cm 2 Gel strength of 3 % (w/v) gel >3290g / cm 2 Gelling temperature 33-34°C Melting temperature 74°C EEO: 0.1-0.2 Moisture: <4% DNase and RNase None detected High Resolution Gel Electrophoresis of DNA Gene Link HiRes agarose is an intermediate melting temperature agarose (~74°C) that provides one of the finest resolutions for DNA fragments from STR, tri and tetra-nucleotide repeat amplification and other length based polymorphisms. Using a 2 – 4% gel (made in either TAE or TBE) it is possible to resolve fragments that are anywhere from 20 – 800 bp in length. A 4% HiRes agarose gel can differentiate a 99bp fragment from a 110 bp fragment running the gels at 45 mAmps at room temperature.
    [Show full text]
  • Agarose Gels (Horizontal Gel Electrophoresis)
    TECHNIQUES IN MOLECULAR BIOLOGY – AGAROSE GELS (HORIZONTAL GEL ELECTROPHORESIS) DNA gels are used to separate fragments of DNA and RNA. Unlike most protein separations which use acrylamide polymers, use agarose in a submerged horizontal orientation, and at time called horizontal gel electrophoresis. This handout will cover the details of agarose gels, the theory of separation by agarose gel electrophoresis and tips for conducting successful gel electrophoresis. The basic principle of separation for all electrophoresis is the movement of a charged molecule in a medium subjected to an electric field. v=Eq/f V is the velocity of the molecule subjected to electrophoresis. E is the electrical field in volts/cm, q is the net charge on the molecule and f is the frictional coefficient. The impact of f depends on the mass and shape of the molecule. This equation simply explains that the rate (v) of a particle depends on the electrical field and charge but inversely impacted by the counteracting force generated by the viscous drag. Factors influencing F is of course the size and shape of the molecule. Think of a short linear oligonucleotide vs a large supercoiled plasmid vs long chromosomal DNA. Adding a value to f is the media through which the molecules migrate. Agarose is a seaweed extract (red algae agar) and is a long polymer of D and L galactose and derivatives in a linear polymer bonded by two different glycosidic bonds. Once hydrated and formed into a gel, the carbohydrate will form helical Repeating pattern of agarose fibers and aggregates creating channels of 50 to more than 200 nm in diameter.
    [Show full text]
  • GENERAL BIOLOGY LABORATORY II Bioassays of Major Biomolecules: Nucleic Acids
    Weeks 9-10: Bioassays of major biomolecules: Nucleic acids GENERAL BIOLOGY LABORATORY II Canbolat Gürses, Hongling Yuan, Samet Kocabay, Hikmet Geckil Department of Molecular Biology and Genetics Inonu University Weeks 9-10 Bioassays of major biomolecules: Nucleic acids DNA is the genetic material in all organisms. Scientists work with DNA for a variety of reasons, such as cloning, amplification, sequencing, and other genetic manipulations. In general, the first steps in DNA (or RNA) studies involve DNA isolation and their qualitative, and quantitative determination. DNA or RNA concentration in solution can be determined through the optic properties (max. absorbance) of nucleotides at 260 nm. Once their concentration and purity are determined, nucleic acids can be investigated with more specific and sensitive methods (e.g., agarose gel electrophoresis, etc.). 1 DNA can be extracted and isolated from any cell, tissue, or organ using a variety of methods such as alkali lysis, enzymatic lysis and boiling methods and it can be precipitated from the rest of cell components by ethanol, isopropanol precipitation. As we have seen for proteins which have specific absorbance maxima at 280 nm, nucleic acids absorb light maximally at 260 nm. However, while one unit A at 280 nm is equal to one unit of protein (as mg ml-1), for DNA and RNA 1 A unit at 260 nm is equal to about 50 and 40 µg ml-1, respectively. The cell extract is a mixture of all cell components and organelles. Once large particles (e.g., organelles, membrane fragments, etc) are removed by a low speed centrifugation, the solution part (i.e., supernatant) contains cell components such as proteins and nucleic acids dissolved in an aqueous environment.
    [Show full text]
  • DNA Molecular Weight Marker VIII (19 – 1114 Bp) Pucbm21 DNA × Hpa II* Digested Pucbm21 DNA × Dra I* + Hind III* Digested
    For life science research only. Not for use in diagnostic procedures. DNA Molecular Weight Marker VIII (19 – 1114 bp) pUCBM21 DNA × Hpa II* digested pUCBM21 DNA × Dra I* + Hind III* digested ־ ␮ Cat. No. 11 336 045 001 50 g 1 A260 unit y Version 19 50 ␮g (200 ␮l) for 50 gel lanes Content version: September 2018 Store at Ϫ15 to Ϫ25°C 1. Product Overview Content Ready-to-use solution in 10 mM Tris-HCl, 1 mM EDTA, pH 8.0 Concentration 250 ␮g/ml Size Distribution Fragment mixture prepared by cleavage of pUCBM21 DNA with restriction endonucleases Hpa II * and Dra I* plus Hind III*. The mixture contains 18 DNA fragments with the following base pair lengths (1 base pair = 660 daltons): 1114, 900, 692, 501, 489, 404, 320, 242, 190, 147, 124, 110, 67, 37, 34, (2×), 26, 19 (determined by computer analysis of the pUCBM21 sequence). Application Molecular weight marker for the size determination of DNA in agarose gels. Properties After gel electrophoresis of 1 ␮g of the fragment mixture in a 2% Aga- rose MP* gel 13 bands are visible. The 501 bp and 489 bp fragments as well as the fragments 37–19 bp run as one band. Typical Analysis Fig. 1: Separation of 1 ␮g DNA Molecular Weight Marker VIII on a The DNA fragment mixture shows the typical pattern of 13 bands in 1.8% agarose gel. Ethidiumbromide stain. agarose gel electrophoresis.. 2. Supplementary Information Storage/Stability The unopened vial is stable at Ϫ15 to Ϫ25°C until the expiration date Changes to Previous Version printed on the label.
    [Show full text]
  • DNA Molecular Weight Marker XIV (100–1500 Bp) 100 Base Pair Ladder
    For life science research only. Not for use in diagnostic procedures. DNA Molecular Weight Marker XIV (100–1500 bp) 100 base pair ladder Cat. No. 11 721 933 001 y Version 08 ␮ c 50 g 1 A260 unit Content version: October 2018 50 ␮g (200 ␮l) for 50 gel lanes Store at Ϫ15 to Ϫ25°C Product overview Formulation Solution in 10 mM Tris-HCl, 1 mM EDTA, pH 8 Concentration 250 µg/ml Size distribution Fragment mixture prepared by cleavage of a specially constructed plasmid with restriction endonucleases. The mixture contains 15 double stranded DNA frag- ments with the following base pair lengths: 100, 200, 300, 400, 500, 600, 700, 800, 900, 1000, 1100, 1200, 1300, 1400, 1500 and an additional band of 2642 bp. The 500 bp and 1000 bp banding pattern is two to three times brighter. Application The DNA Molecular Weight Marker XIV allows accurate sizing of DNA fragments generated by PCR or restric- tion digest separated on agarose gels. The DNA molec- ular weight marker can be used in conjunction with DNA Molecular Weight Marker XIII (50 bp ladder)* for precise size determination. Electrophoretic separation of this molecular weight marker results in a regular pattern. The fragments have 5'-protruding ends which can be labeled by filling in reactions using e.g. [32P]-dTTP and [32P]-dGTP, or using DIG-11-ddUTP* and Terminal Transferase*. Typical analysis The DNA fragment mixture shows the ladder with 15 bands and an additional band of 2642 bp in agarose gel electrophoresis as shown in the figure. Fig.: Separation of 1 µg DNA molecular weight marker XIV on a 2% Separation Apply 1 µg DNA per lane on a 2% Agarose MP* gel.
    [Show full text]
  • Section IV: Detection and Sizing of DNA in Agarose Gels
    Section IV: Detection and Sizing of DNA in Agarose Gels In This Section Guide to Lonza Ladders and Markers 96 Detecting DNA with GelStar® and SYBR® Green Nucleic Acid Gel Stains 98 Detecting DNA with Ethidium Bromide 102 High Sensitivity Detection using the FlashGel® System 103 Sizing and Detection References 104 Gels in Agarose DNA of 95 1-800-638-8174 www.lonza.com/research Return to Main Section IV: Detection and Sizing of DNA in Agarose Gels Guide to Lonza Ladders and Markers Size Range (Bold numbers indicate brighter bands) 100 bp Quant Rev Quant 50 bp- 50 bp- 1 kb- 20 bp 20 bp Ext 100 bp ext Tandem 500 bp Ladder Ladder 1000 bp 2500 bp 10 kb Standard Ladders (Cat. No.) 50330 50320 50321 50322 NA 50323 50334 50335 50461 50631 50471 SimplyLoad® Ladders (Cat. No.) 50331 50326 50327 50328 50333 50329 50336 50337 NA NA NA Number of 25 50 10 30 21 16 5 5 9 13 9 Fragments Size Range 20 bp – 20 bp – 100 bp – 10 bp – 100 bp – 500 bp – 100 bp – 100 bp – 50 bp – 50 bp – 1 kb – 500 bp 1,000 bp 1,000 bp 3,000 bp 12 kb 8 kb 1,000 bp 1,000 bp 1,000 bp 2,500 bp 10 kb 500 bp 1,000 bp 1,000 bp 3,000 bp 12 kb 8,000 bp 1,000 bp 1,000 bp 1,000 bp 2.5 kb 10 kb 480 bp 980 bp 900 bp 2,900 bp 11 kb 7,500 bp 700 bp 700 bp 700 bp 2 kb 7 kb 460 bp 960 bp 800 bp 2,800 bp 10 kb 7,000 bp 500 bp 500 bp 525 bp 1.5 kb 5 kb 440 bp 940 bp 700 bp 2,700 bp 9 kb 6,500 bp 200 bp 200 bp 500 bp 1250 bp 4 kb 420 bp 920 bp 600 bp 2,600 bp 8 kb 6,000 bp 100 bp 100 bp 400 bp 1 kb 3 kb 400 bp 900 bp 500 bp 2,500 bp 7 kb 5,500 bp 300 bp 700 bp 2.5 kb 380 bp 880 bp 400 bp 2,400
    [Show full text]
  • Structural Insights Into Flagellar Stator– Rotor Interactions Yunjie Chang1,2†, Ki Hwan Moon1,3†‡, Xiaowei Zhao2,4†§, Steven J Norris4, MD a Motaleb3*, Jun Liu1,2,4*
    RESEARCH ARTICLE Structural insights into flagellar stator– rotor interactions Yunjie Chang1,2†, Ki Hwan Moon1,3†‡, Xiaowei Zhao2,4†§, Steven J Norris4, MD A Motaleb3*, Jun Liu1,2,4* 1Department of Microbial Pathogenesis, Yale University School of Medicine, New Haven, United States; 2Microbial Sciences Institute, Yale University, West Haven, United States; 3Department of Microbiology and Immunology, Brody School of Medicine, East Carolina University, Greenville, United States; 4Department of Pathology and Laboratory Medicine, McGovern Medical School at University of Texas Health Science Center at Houston, Houston, United States Abstract The bacterial flagellar motor is a molecular machine that can rotate the flagellar filament at high speed. The rotation is generated by the stator–rotor interaction, coupled with an ion flux through the torque-generating stator. Here we employed cryo-electron tomography to visualize the intact flagellar motor in the Lyme disease spirochete, Borrelia burgdorferi. By analyzing the motor structures of wild-type and stator-deletion mutants, we not only localized the *For correspondence: stator complex in situ, but also revealed the stator–rotor interaction at an unprecedented detail. [email protected] (MDAM); Importantly, the stator–rotor interaction induces a conformational change in the flagella C-ring. [email protected] (JL) Given our observation that a non-motile mutant, in which proton flux is blocked, cannot generate †These authors contributed the similar conformational change, we propose that the proton-driven torque is responsible for the equally to this work conformational change required for flagellar rotation. DOI: https://doi.org/10.7554/eLife.48979.001 Present address: ‡Division of Marine Bioscience, Korea Maritime and Ocean University, Busan, Republic of Korea; §HHMI Introduction Janelia Research Campus, Ashburn, United States Many bacterial pathogens require motility to infect, disseminate, and cause disease in humans and other mammalian hosts.
    [Show full text]
  • Pierce Protein a Agarose
    INSTRUCTIONS ® Pierce Protein A Agarose 0037.6 Number Description 20333 Pierce Protein A Agarose, 5mL settled resin 20334 Pierce Protein A Agarose, 25mL settled resin Support: Crosslinked 6% beaded agarose supplied as a 50% slurry (e.g., 5mL of settled resin is equivalent to 10mL of 50% slurry) containing 0.02% sodium azide Binding capacity: 12-19mg of human IgG or 6-8mg mouse IgG per mL of settled resin 22810 Pierce Protein A Plus Agarose, 1mL settled resin 22811 Pierce Protein A Plus Agarose, 5mL settled resin 22812 Pierce Protein A Plus Agarose, 25mL settled resin Support: Crosslinked 6% beaded agarose supplied as a 50% slurry (e.g., 5mL of settled resin is equivalent to 10mL of 50% slurry) containing 0.02% sodium azide Binding capacity: > 34mg human IgG or 16-17mg mouse IgG per mL of settled resin 20338 Protein A Trisacryl® Resin, 5mL settled resin Support: Trisacryl GF-2000 supplied as a 50% slurry (e.g., 5mL of settled resin is equivalent to 10mL of 50% slurry) containing 0.02% sodium azide Binding capacity: 15mg human IgG or 6-8mg mouse IgG per mL of settled resin Storage: Upon receipt store product at 4-8°C. Product is shipped at ambient temperature. Introduction Protein A is a cell wall component produced by several strains of Staphylococcus aureus that consists of a single polypeptide chain (MW ~ 46,700; MW by SDS-PAGE ~ 42,000) and contains little or no carbohydrate.1,2 Protein A has four high affinity 8 (Ka = 10 /M) binding sites capable of binding specifically to the Fc region of immunoglobulin molecules from several species.3 The Protein A molecule is heat-stable and retains its native conformation when exposed to denaturing reagents such as 4M urea, 4M thiocyanate and 6M guanidine hydrochloride.4 Covalently immobilized Protein A matrices have been extensively used to purify IgG from several species of mammals.
    [Show full text]
  • Design and Fabrication of Low-Cost Microfluidic Channel for Biomedical Application
    www.nature.com/scientificreports OPEN Design and Fabrication of Low-cost Microfuidic Channel for Biomedical Application Shailendra Kumar Tiwari1, Somashekara Bhat1 ✉ & Krishna K. Mahato2 This paper presents the design, simulation and low-cost fabrication of microfuidic channel for biomedical application. Channel is fabricated using soft lithography technique. Printed Circuit Board (PCB) is used to make the master for the channel. Channel pattern is transferred on PCB plate using toner transfer technique followed by ferric chloride etching. Paper also discusses, the issues involved in PCB based master fabrication and their viable solutions. Glass is used as substrate material and the channel is made of Sylgard 184 Polydimethylsiloxane (PDMS). Channel is interfaced with a syringe pump to observe the fuid fow. To predict the behavior of the channel, FEM simulation is performed using COMSOL Multiphysics 5.2a. There is a good match between the theoretical, simulation and test results. Finally, to test the biocompatibility of the channel, genomic DNA is passed through the channel and gel electrophoresis analysis is performed. Microfuidics deals with the study of devices that can handle the very small amount of liquid down to femtoliter with the help of small channels and reservoirs. Te dimensions of microfuidic devices range from ten to hun- dreds of micrometers1–5. Tese devices have promising applications in biological analysis6–9 chemical analysis10, optical communication11, cooling of Integrated Circuits (ICs)12, and many more. In microfuidics, scaling down the device dimensions to microscale reduces the amount of sample and reagents required to perform the assay, resulting in a huge saving in cost and the reduction in the amount of waste produced.
    [Show full text]