Overview of Listeriosis in the Southern African Hemisphere—Review

Total Page:16

File Type:pdf, Size:1020Kb

Overview of Listeriosis in the Southern African Hemisphere—Review Received: 21 August 2019 Revised: 12 October 2019 Accepted: 19 October 2019 DOI: 10.1111/jfs.12732 ORIGINAL ARTICLE Overview of listeriosis in the Southern African Hemisphere—Review Adeoye J. Kayode1,2 | Etinosa O. Igbinosa3 | Anthony I. Okoh1,2 1Applied and Environmental Microbiology Research Group (AEMREG), Department of Abstract Biochemistry and Microbiology, University of Listeriosis is rarely reported in the Southern African Hemispheres in spite of the Fort Hare, Alice, South Africa increasing rate of Listeria in several foodborne outbreaks reported in advanced coun- 2SAMRC Microbial Water Quality Monitoring Center, University of Fort Hare, Alice, tries. This paper reviews the emerging trends in the spread, distribution, and epidemi- South Africa ology of Listeria species in foods, water, human, animals, and different environments 3Department of Microbiology, Faculty of Life Sciences, Private Mail Bag 1154, University of in Southern Africa based on the appraisal of scholarly articles. In this regard, informa- Benin, Benin City, Nigeria tion obtained from literatures from various online databases revealed that Listeria Correspondence species are commonly recovered from food, water, and human samples. Fewer arti- Adeoye J. Kayode, Applied and Environmental cles provided information on Listeria recovered from animals (ruminants) and soil Microbiology Research Group (AEMREG), Department of Biochemistry and samples. Generally, reports of studies were more focused on Listeria monocytogenes Microbiology, University of Fort Hare, Private among other Listeria species. To this end, reports obtained from literature on the Mail Bag X1314, Alice 5700, South Africa. Email: [email protected] method of identification of Listeria were mostly based on serological, classical bio- chemical methods and the principle of aesculin hydrolysis, usually characterized by Funding information The World Academy of Sciences, Grant/Award black coloration on selective media for Listeria. These methods may not be reliable, Number: 110811; National Research as they could sometimes give a false positive report. Therefore, molecular methods Foundation of South Africa; South African Medical Research Council are more reliable, accurate, could show the genetic relationship between isolates, and at the same time capable of enabling tracking the source of this pathogen should be embraced as a better substitute for the identification of Listeria in Southern African sub-region. 1 | INTRODUCTION that they are catalase positive, oxidase negative, and ferment carbohydrates (Orsi & Wiedmann, 2016; Rods, 2014). Listeria is a bacterial genus, of the family Listeriaceae, made up of Listeria genus used to composed of six species which are: L. mono- gram-positive members that are short rods with a round end (Orsi & cytogenes, L. ivanovii, L. seeligeri, L. grayi, L. welshimeri, and L. innocua; Wiedmann, 2016). Usually, they appear as singular cells, short chains, all of which are mostly adapted to water, soil, and vegetation (Hawker and sometimes filamentous (Gelfand, 2012; Rods, 2014). They are fac- et al., 2018; Linke et al., 2014). Recently, a subspecies, and novel ultative anaerobes (Bortolussi, 2008), non-acid fast bacteria, non- species, usually isolated from foods, environmental niches in spore forming, and without capsule (Sleator, Watson, Hill, & Gahan, different parts of the world, as well as the natural and agricultural 2009). Listeria species possess peritrichous flagella, which are respon- milieu, were introduced to the genus, and includes: L. marthii, L. sible for their typical “tumbling” motility when grown at 20 to 25C weihenstephanensis, L. booriae, L. fleischmannii subsp. coloradonensis; (Rods, 2014). When cultivated on blood agar, the colonies are non- novel species such as L. floridensis, L. aquatica L. cornellensis, L. pigmented and may show resemblance to those of β-hemolytic strep- grandensis, L. riparia, L. fleischmannii, and L. newyorkensis (Abay et al., tococci (Gelfand, 2012). Their biochemical characteristics revealed 2019; Barre et al., 2016; Bertsch et al., 2013; Weller, Andrus, This is an open access article under the terms of the Creative Commons Attribution-NonCommercial License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. © 2019 The Authors. Journal of Food Safety published by Wiley Periodicals, Inc. J Food Saf. 2020;40:e12732. wileyonlinelibrary.com/journal/jfs 1of22 https://doi.org/10.1111/jfs.12732 2of22 KAYODE ET AL. Wiedmann, & Bakker, 2015). These 11 new Listeria species were et al., 2019; Ghanbari, Jami, Domig, & Kneifel, 2013; Jami et al., regarded to be non-pathogenic to humans on the basis of not having 2014). However, they can be easily destroyed at cooking tempera- major genetic traits in their genomic elements hence; Listeria genus tures (Chan & Wiedmann, 2008). currently has 17 species (Orsi & Wiedmann, 2016). In spite of the increasing listeriosis rate reported in several foodborne outbreaks globally (Desai, Anyoha, Madoff, & Lassmann, 1.2 | Transmission of Listeria 2019; Siegman-Igra et al., 2002) such as Europe, Germany, France, Japan, New Zealand, U.S.A. (Botsaris, Nikolaou, Liapi, & Pipis, 2016; Transmission of Listeria spp. (80–90%) is primarily by (fecal-oral route) Halbedel et al., 2019; Marus, 2019), China (Wang et al., 2013), consuming contaminated foods and water (den Bakker, Manuel, Canada (Hanson et al., 2019), it is not commonly reported in the Fortes, Wiedmann, & Nightingale, 2013; Jarvis, O'Bryan, Ricke, John- Southern African hemisphere. This study articulates an overview of son, & Crandall, 2016; Linke et al., 2014). However, they can also be emerging trends in the spread, distribution, and epidemiology of transmitted between humans (from mother to fetus both in per- Listeria species in foods, water, human, animals, and different environ- ipartum and utero following maternal bacteremia). Other uncommon ments in the Southern African countries. This review, evaluates schol- possible modes include infected animals to humans resulting in skin arly articles obtained from various online databases such as Google lesions among veterinarians and nosocomial transmission (Abay et al., Scholar, Pubmed, and Scopus. The search keywords used to access 2019; Goenka & Kneen, 2019; Nelson, Warren, Tomasi, Raju, & articles online includes phrases such as “isolation of Listeria species, Vidyasagar, 1985). Transmission of Listeria from animal to human and Listeria species in Southern Africa, Listeriosis and global outbreaks.” its circulation in the environment is presented in Figure 1. Search keywords like “Listeria species in South Africa” Listeria species The disease conditions associated with Listeria infection could be in Angola” and so on were also employed to source for articles for categorized into non-invasive (febrile listerial gastroenteritis) and inva- each of the Southern African countries (Angola, Botswana, Lesotho, sive (infection caused at sterile part of the body such as the blood, Malawi, Namibia, South Africa, Swaziland, Zambia, and Zimbabwe). liver, cerebral fluid) listeriosis (Bhat et al., 2013; Data, 2015; Zhu, Goo- Searches were extended to source for more articles on Google, due to neratne, & Hussain, 2017). Non-invasive listeriosis manifests less fewer articles indexed by the databases previously searched. There- severe symptoms like fever, diarrhea, headache, and muscle pain fore, this article further described the ecological distribution, transmis- (myalgia) which occur after a short incubation period and is often sion, treatment, control, and occurrence of Listeria of species in food, associated with ingestion of a high dose of the pathogenic Listeria food processing environment, water, animal, and human. species by healthy persons (FSAI, 2011; WHO, 2018) as reported in the case noninvasive listeriosis (Halbedel et al., 2019). Invasive listeri- osis affects immunosuppressed individual including cancer patients, 1.1 | Ecological distribution of Listeria pregnant women, acquired immunodeficiency syndrome (AIDS) patients, young and elderly persons (Desai et al., 2019). It is usually Species of Listeria have a wide distribution in the environment and have characterized by the severity of symptoms and high death rate com- been recovered from dust, vegetation, decaying materials, soil, water, monly associated with gastroenteritis, meningitis, pneumonia, septice- sewage, animal feeds, silage, and natural habitats (Barre et al., 2016; mia, and spontaneous abortion (Arslan & Baytur, 2019; Chersich, Sheng, Tsai, Zhu, & Zhu, 2019; Weller et al., 2015). They are often pre- Scorgie, Rees, & Wright, 2018; FSAI, 2011; Vázquez-Boland et al., sent in foods gotten from plant and animal sources, and are constantly 2001). The infectious dose of Listeria may vary with the susceptive found in environments where food is processed (Aalto-Araneda, host and the strain causing infection (FSAI, 2011; Pouillot et al., Lunden, Markkula, Hakola, & Korkeala, 2019; Kaczmarek, Avery, & Sin- 2016). The approximate value of 106–107 CFUs (colony forming units) gleton, 2019). Listeria may also be found in processed foods due to is considered as the infectious dose of L. monocytogenes in humans chances of contamination that may occur after processing or when and primates, however a lower dose of 104 can cause listeriosis in per- inadequate heat treatment is used (US FDA, 2019). Domestic as well as sons with compromised immune
Recommended publications
  • Cross-Resistance to Phage Infection in Listeria Monocytogenes Serotype 1/2A Mutants and Preliminary Analysis of Their Wall Teichoic Acids
    University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Masters Theses Graduate School 8-2019 Cross-resistance to Phage Infection in Listeria monocytogenes Serotype 1/2a Mutants and Preliminary Analysis of their Wall Teichoic Acids Danielle Marie Trudelle University of Tennessee, [email protected] Follow this and additional works at: https://trace.tennessee.edu/utk_gradthes Recommended Citation Trudelle, Danielle Marie, "Cross-resistance to Phage Infection in Listeria monocytogenes Serotype 1/2a Mutants and Preliminary Analysis of their Wall Teichoic Acids. " Master's Thesis, University of Tennessee, 2019. https://trace.tennessee.edu/utk_gradthes/5512 This Thesis is brought to you for free and open access by the Graduate School at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Masters Theses by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. To the Graduate Council: I am submitting herewith a thesis written by Danielle Marie Trudelle entitled "Cross-resistance to Phage Infection in Listeria monocytogenes Serotype 1/2a Mutants and Preliminary Analysis of their Wall Teichoic Acids." I have examined the final electronic copy of this thesis for form and content and recommend that it be accepted in partial fulfillment of the equirr ements for the degree of Master of Science, with a major in Food Science. Thomas G. Denes, Major Professor We have read this thesis and recommend its acceptance:
    [Show full text]
  • A Critical Review on Listeria Monocytogenes
    International Journal of Innovations in Biological and Chemical Sciences, Volume 13, 2020, 95-103 A Critical Review on Listeria monocytogenes Vedavati Goudar and Nagalambika Prasad* *Department of Microbiology, Faculty of Life Science, School of Life Sciences, JSS Academy of Higher Education & Research, Mysuru, Karnataka, Pin code: 570015, India ABSTRACT Listeria monocytogenes is an omnipresent gram +ve, rod shaped, facultative, and motile bacteria. It is an opportunistic intracellular pathogenic microorganism that has become crucial reason for human food borne infections worldwide. It causes Listeriosis, the disease that can be serious and fatal to human and animals. Listeria outbreaks are often linked to dairy products, raw vegetables, raw meat and smoked fish, raw milk. The most effected country by Listeriosis is United States. CDC estimated that 1600 people get Listeriosis annually and regarding 260 die. It additionally contributes to negative economic impact because of the value of surveillance, investigation, treatment and prevention of sickness. The analysis of food products for presence of pathogenic microorganisms is one among the fundamental steps to regulate safety of food. This article intends to review the status of its introduction, characteristics, outbreaks, symptoms, prevention and treatment, more importantly to controlling the Listeriosis and its safety measures. Keywords: Listeria monocytogenes, Listeriosis, Food borne pathogens, Contamination INTRODUCTION Food borne health problem is outlined by the World Health Organization as “diseases, generally occurs by either infectious or hepatotoxic in nature, caused by the agents that enter the body through the activity of food WHO 2015 [1]. Causes of food borne health problem include bacteria, parasites, viruses, toxins, metals, and prions [2].
    [Show full text]
  • Isolation and Characterization of Bacteriophages Against Listeria Monocytogenes and Their Applications As Biosensors for Foodborne Pathogen Detection
    Isolation and Characterization of Bacteriophages against Listeria monocytogenes and their Applications as Biosensors for Foodborne Pathogen Detection by Safaa Ahmed Othman Fallatah A Thesis Presented to The University of Guelph In partial fulfillment of requirements for the degree of Master of Science in Food Science Guelph, Ontario, Canada © Safaa Fallatah, February, 2018 ABSTRACT The Isolation and Characterization of Lytic Bacteriophages against Listeria Spp and their Applications for the Rapid Detection of L. monocytogenes in Food Contact Surface and Broth Safaa Fallatah Advisor: University of Guelph, 2018 Dr. Mansel Griffiths The aim of this study was to determine the potential application of bacteriophages for the detection of Listeria spp. on food contact surfaces (FCS). Eight phages were selected for further characterization to determine the most appropriate phage for use in a detection assay. They were characterized for host range, TEM, stability to air dying for 24 h at 25 °C, and restriction endonuclease pattern. L. monocytogenes strain C716 was very resistant to all phages, however; a mutated phage, AG13M, was able to infect L. monocytogenes strain C716. AG20 & AG23 phages were high specificity against their host (Listeria spp). AG20 phage was immobilized on ColorLok paper and used in the to detect L. monocytogenes C519 in broth and FCS. AG20 phage was able to detect as few as 50 CFU/mL of L. monocytogenes in TSB and 40 CFU/cm2 on FCS using a plaque assay to detect progeny phage within 24 h. ACKNOWLEDGMENTS In the name of Allah, the most gracious and the most merciful I would like to begin my thesis with the recognition that without his support and kindness I couldn’t done this thesis.
    [Show full text]
  • Prevalence and Antibiograms of Listeria Monocytogenes
    PREVALENCE AND ANTIBIOGRAMS OF LISTERIA MONOCYTOGENES ISOLATES FROM RAW MILK AND YOGHURT IN ZARIA, KADUNA STATE, NIGERIA Veronica Chizoba GABRIEL (D.V.M 2004, A.B.U, Zaria) (MSC/VET.MED/04909/2010-2011) A DISSERTATION SUBMITTED TO THE SCHOOL OF POSTGRADUATE STUDIES, AHMADU BELLO UNIVERSITY, ZARIA IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE AWARD OF MASTER OF SCIENCE DEGREE IN VETERINARY PUBLIC HEALTH AND PREVENTIVE MEDICINE DEPARTMENT OF VETERINARY PUBLIC HEALTH AND PREVENTIVE MEDICINE AHMADU BELLO UNIVERSITY, ZARIA SEPTEMBER, 2015 DECLARATION I declare that the work presented in this thesis titled “PREVALENCE AND ANTIBIOGRAMS OF LISTERIA MONOCYTOGENES ISOLATES FROM RAW MILK AND YOGHURT IN ZARIA, KADUNA STATE, NIGERIA” has been carried out by me in the department of Veterinary Public Health and Preventive Medicine. The information derived from the literature has been duely acknowledged in the text and a list of refrences provided. No part of this dissertation was previously presented for another degree or diploma at this or any other institution. Veronica Chizoba GABRIEL ……………………………….. ……………………..... …………………….. Name of Student Signature Date ii CERTIFICATION This thesis entitled “PREVALENCE AND ANTIBIOGRAMS OF LISTERIA MONOCYTOGENES ISOLATES FROM RAW MILK AND YOGHURT IN ZARIA, KADUNE STATE, NIGERIA” by Veronica Chizoba GABRIEL meets the regulations governing the award of Master of Science of Ahmadu Bello University, Zaria, and is approved for its contribution to knowledge and literary presentation. ……………………………… …………………………… ………………………. Prof. J.K.P. Kwaga Signature Date Chairman, Supervisory Committee …………………………. …………………………... ……………………… Prof. J.Kabir Signature Date Member, Supervisory Committee ……………………….. …………………………. ……………………… Prof. E.C.Okolocha Signature Date Head of Department Veterinary Public Health and Preventive Medicine ………………………… ………………………… ……………………… Prof. K. Bala Signature Date Dean, School of Postgraduate studies iii DEDICATION To Divine, David and Delight.
    [Show full text]
  • Stress Response Mechanisms in Listeria Monocytogenes
    Department of Food Hygiene and Environmental Health Faculty of Veterinary Medicine University of Helsinki Helsinki, Finland STRESS RESPONSE MECHANISMS IN LISTERIA MONOCYTOGENES Mirjami Mattila ACADEMIC DISSERTATION To be presented, with the permission of the Faculty of Veterinary Medicine of the University of Helsinki, for public examination in Walter Auditorium of the EE-building (Agnes Sjöbergin katu 2, Helsinki), on the 10th of December 2020, at 12 noon. Helsinki 2020 Supervising Professor Professor Miia Lindström, DVM, Ph.D. Department of Food Hygiene and Environmental Health Faculty of Veterinary Medicine University of Helsinki Helsinki, Finland Supervisors Professor Emeritus Hannu Korkeala, DVM, Ph.D., M.Soc.Sc. Department of Food Hygiene and Environmental Health Faculty of Veterinary Medicine University of Helsinki Helsinki, Finland Professor Miia Lindström, DVM, Ph.D. Department of Food Hygiene and Environmental Health Faculty of Veterinary Medicine University of Helsinki Helsinki, Finland Reviewed by Director, Professor Aivars Bērziņš, DVM, Ph.D. National Institute of Food Safety, Animal Health and Environment “BIOR” Faculty of Veterinary Medicine Latvia University of Life Sciences and Technologies Riga, Latvia Professor Mati Roasto, DVM, M.Sc., Ph.D. Department of Food Hygiene and Veterinary Public Health Institute of Veterinary Medicine and Animal Sciences Estonian University of Life Sciences Tarto, Estonia Opponent Professor Emeritus Atte von Wright, M.Sc., Ph.D. Institute of Public Health and Clinical Nutrition University of Eastern Finland Kuopio, Finland ISBN 978-951-51-6847-4 (paperback) ISBN 978-951-51-6848-1 (PDF) Unigrafia Helsinki 2020 ABSTRACT Listeria monocytogenes is the causative agent of serious food-borne illness, listeriosis. The ability of L monocytogenes to survive and proliferate over a wide range of environmental conditions allows it to overcome various food preservation and safety barriers.
    [Show full text]
  • Listeria Monocytogenes Biofilms Produced Under Nutrient Scarcity and Cold Stress: Disinfectant Susceptibility of Persistent Strains
    UNIVERSIDADE DE LISBOA FACULDADE DE CIÊNCIAS DEPARTAMENTO DE BIOLOGIA VEGETAL Listeria monocytogenes biofilms produced under nutrient scarcity and cold stress: disinfectant susceptibility of persistent strains collected from the meat industry in Spain Inês Lírio Barroso Mestrado em Microbiologia Aplicada Dissertação Dissertação orientada por: Professora Maria Luísa Lopes de Castro e Brito (ISA) Professora Ana Maria Gonçalves Reis (FCUL) 2017 I Acknowledgements I would first like to thank my thesis advisor Luísa Brito for the opportunity given and mainly for her knowledge, patience, support, counselling, affability and cosiness. The door to Professor Luísa office was always open whenever I needed or had a question about the experimental procedure or writing. Secondly, to Dr Paula Cunha for her precious aid both comprehending and applying the statistical programs used in this work as well as all for her valuable advice through the writing process. In third place, I would like to thank Master Ana Carla Silva for all the tips and lab support given along my thesis but also for the deepest sympathy and ongoing availability to help. Our lab colleagues are always our biggest and loyal supporters. A big hug to my companions Vera Maia and Ana Gonçalves for their support and friendship. The lab family wouldn’t be complete without the warmth, affection and joy of D. Manuela and D. Helena, whose help was crucial for this thesis development. I would also like to thank Professor Ana Maria Reis for her advice, interest and willingness to help in the process. My biggest acknowledgement goes to my family and particularly to my parents, who always taught me the meaning of hard-work and perseverance.
    [Show full text]
  • Foodborne Pathogen Persistence in the Food Processing Environment
    FOODBORNE PATHOGEN PERSISTENCE IN THE FOOD PROCESSING ENVIRONMENT by Alex L. Brandt, M.S. A Dissertation In ANIMAL SCIENCE Submitted to the Graduate Faculty of Texas Tech University in Partial Fulfillment of the Requirements for the Degree of DOCTOR OF PHILOSOPHY Approved Kendra K. Nightingale, Ph.D. Chair of Committee Mindy M. Brashears, Ph.D. J. Chance Brooks, Ph.D. Margarget D. Hardin, Ph.D. Haley F. Oliver, Ph.D. Mark Sheridan, Ph.D. Dean of the Graduate School May, 2014 Copyright 2014, Alex Brandt Texas Tech University, Alex Brandt, May 2014 ACKNOWLEDGEMENTS There are countless people who have been supportive of me in my endeavor to obtain my Ph.D., and I owe them all a great deal of gratitude. Mentioning all of them here would make up an entire dissertation in itself, so even though all are not mentioned by name, they still hold a special place in my heart. First and foremost, I thank my parents, who have always been by my side in both times of joyous accomplishment and in times when I was down and desperately needed someone to talk to. The love that constantly flows from their open hearts, and the concern that is constantly in their open ears, are gifts that I can only hope to give to others in my life. Also, the lessons they taught me about working hard, and carrying on in the midst of life’s trials, are something I will always carry in my heart and mind. My extended family, including all of my grandparents, aunts, uncles, and cousins have also been supportive of all my aspirations, and I also will be forever grateful to them for all the unwavering support and encouragement they have always given me.
    [Show full text]
  • Control of Listeria Monocytoenes in the Food Industry
    Department of Food Hygiene and Environmental Health Faculty of Veterinary Medicine University of Helsinki Helsinki CONTROL OF LISTERIA MONOCYTOGENES IN THE FOOD INDUSTRY Riina Tolvanen ACADEMIC DISSERTATION To be presented, with the permission of the Faculty of Veterinary Medicine of the University of Helsinki, for public examination in Walther Auditorium, EE-building (Agnes Sjöbergin katu 2), on 2nd September 2016, at 12 noon. Helsinki 2016 Supervising Professor Hannu Korkeala, DVM, Ph.D., M.Soc.Sc. Professor Department of Food Hygiene and Environmental Health Faculty of Veterinary Medicine University of Helsinki Helsinki, Finland Supervisors Professor Hannu Korkeala, DVM, Ph.D., M.Soc.Sc. Department of Food Hygiene and Environmental Health Faculty of Veterinary Medicine University of Helsinki Helsinki, Finland Docent Janne Lundén, DVM, Ph.D. Department of Food Hygiene and Environmental Health Faculty of Veterinary Medicine University of Helsinki Helsinki, Finland Reviewed by Laura Raaska, Ph.D. Docent, University of Helsinki Director, Biosciences and Environment Research Unit Academy of Finland Helsinki, Finland Associate professor Marcello Trevisani Department of Veterinary Medical Sciences Faculty of Veterinary Medicine University of Bologna Bologna, Italy Opponent Riitta Maijala, DVM, PhD Docent, University of Helsinki Vice President for Research Academy of Finland Helsinki, Finland ISBN 978-951-51-2385-5 (pbk.) ISBN 978-951-51-2386-2 (PDF) Unigrafia Helsinki 2016 ABSTRACT Contamination routes of Listeria monocytogenes were examined during an 8-year period in a chilled food-processing establishment that produced ready-to-eat meals using amplified fragment length polymorphism (AFLP) analysis. The three compartments (I to III) of the establishment exhibited significantly different contamination statuses.
    [Show full text]
  • Segal's Law, 16S Rrna Gene Sequencing, and the Perils Of
    Segal's Law, 16S rRNA gene sequencing, and the perils of foodborne pathogen detection within the American Gut Project James B. Pettengill and Hugh Rand Biostatistics and Bioinformatics Staff, Office of Analytics and Outreach, US Food and Drug Administration, College Park, MD, United States of America ABSTRACT Obtaining human population level estimates of the prevalence of foodborne pathogens is critical for understanding outbreaks and ameliorating such threats to public health. Estimates are difficult to obtain due to logistic and financial constraints, but citizen science initiatives like that of the American Gut Project (AGP) represent a potential source of information concerning enteric pathogens. With an emphasis on genera Listeria and Salmonella, we sought to document the prevalence of those two taxa within the AGP samples. The results provided by AGP suggest a surprising 14% and 2% of samples contained Salmonella and Listeria, respectively. However, a reanalysis of those AGP sequences described here indicated that results depend greatly on the algorithm for assigning taxonomy and differences persisted across both a range of parameter settings and different reference databases (i.e., Greengenes and HITdb). These results are perhaps to be expected given that AGP sequenced the V4 region of 16S rRNA gene, which may not provide good resolution at the lower taxonomic levels (e.g., species), but it was surprising how often methods differ in classifying reads—even at higher taxonomic ranks (e.g., family). This highlights the misleading conclusions that can be reached when relying on a single method that is not a gold standard; this is the essence Submitted 8 February 2017 of Segal's Law: an individual with one watch knows what time it is but an individual Accepted 31 May 2017 with two is never sure.
    [Show full text]
  • Biofilm Forming Ability and Exoproteomic Analysis of Listeria Monocytogenes
    Biofilm forming ability and exoproteomic analysis of Listeria monocytogenes Tese apresentada para obtenção do grau de Doutor em Engenharia Alimentar António Clara Abreu Afonso Lourenço Orientadora: Doutora Maria Luisa Lopes de Castro e Brito Coorientador: Doutor Joseph Florian Frank Presidente: Reitor da Universidade de Lisboa Vogais: Doutor Joseph Florian Frank Professor Catedrático University of Georgia, USA Doutora Isabel Maria de Sá Correia Leite de Almeida Professora Catedrática Instituto Superior Técnico da Universidade de Lisboa Doutora Joana Cecília Valente de Rodrigues Azeredo Professora Associada Escola de Engenharia da Universidade do Minho Maria Teresa Ferreira de Oliveira Barreto Goulão Crespo Investigadora Principal Instituto de Biologia Experimental e Tecnológica de Universidade Nova de Lisboa Doutora Maria Luisa Lopes de Castro e Brito Professora Auxiliar com Agregação Instituto Superior de Agronomia da Universidade de Lisboa Doutora Paula Cristina Maia Teixeira Professora Auxiliar Escola Superior de Biotecnologia da Universidade Católica Portuguesa Lisboa 2014 1 À memória de meus Avós AGRADECIMENTOS ACKNOWLEDGMENTS A realização deste trabalho contou com ajuda pessoal e/ou institucional que não posso deixar de referir e agradecer. À Professora Luisa Brito, enquanto minha orientadora, agradeço toda a confiança que depositou na minha formação, toda a disponibilidade que sempre teve e o constante incentivo ao longo de todo o trabalho. Após vários anos de intensos e rigorosos ensinamentos científicos, guardo ainda com mais apreço todos os ensinamentos de vida e a amizade com a qual, estou certo, poderei contar para a vida. To Professor Joseph F. Frank for accepting to be my co-supervisor, having received me in his laboratory and all his guidance during the thesis work.
    [Show full text]
  • Identified Listeria Monocytogenes Virulence Regulators
    Listeria monocytogenes DOUTORAMENTO EM CIÊNCIAS BIOMÉDICAS DOUTORAMENTO Molecular characterization of newly newly of characterization Molecular identified Jorge Nuno Pinheiro D 2017 virulence regulators Jorge Nuno Pinheiro. Molecular characterization of newly D.ICBAS 2017 identified Listeria monocytogenes virulence regulators Molecular characterization of newly identified Listeria monocytogenes virulence regulators Jorge Nuno Martins Campos Pinheiro INSTITUTO DE CIÊNCIAS BIOMÉDICAS ABEL SALAZAR JORGE NUNO MARTINS CAMPOS PINHEIRO MOLECULAR CHARACTERIZATION OF NEWLY IDENTIFIED LISTERIA MONOCYTOGENES VIRULENCE REGULATORS Tese de Candidatura ao grau de Doutor em Ciências Biomédicas, submetida ao Instituto de Ciências Biomédicas Abel Salazar da Universidade do Porto. Instituição de acolhimento – Instituto de Biologia Molecular e Celular - Instituto de Investigação e Inovação em Saúde Orientador – Doutor Didier Jacques Christian Cabanes Categoria – Investigador principal Afiliação – Instituto de Biologia Molecular e Celular - Instituto de Investigação e Inovação em Saúde Coorientador – Professor Doutor Rui Appelberg Gaio Lima Categoria – Professor catedrático Afiliação – Instituto de Ciências Biomédicas Abel Salazar da Universidade do Porto De acordo com o disposto no ponto n.º 2 do Art.º 31º do Decreto-Lei n.º 74/2006, de 24 de Março, aditado pelo Decreto-Lei n.º 230/2009, de 14 de Setembro, o autor declara que na elaboração desta tese foram incluídos dados da publicação abaixo indicada. O autor participou ativamente na conceção e execução dos trabalhos que estiveram na origem dos mesmos, assim como na sua interpretação, discussão e redação. According to the relevant national legislation, the author declares that this thesis includes data from the publication indicated below. The author participated actively in the conception and execution of the work that originated that data, as well as in their interpretation, discussion and writing.
    [Show full text]
  • Listeria Monocytogenes Virulence Factors
    IDENTIFICATION AND CHARACTERIZATION OF NEW LISTERIA MONOCYTOGENES VIRULENCE FACTORS by Ana Cláudia Moutinho Gonçalves September 2019 IDENTIFICATION AND CHARACTERIZATION OF NEW LISTERIA MONOCYTOGENES VIRULENCE FACTORS Thesis presented to Escola Superior de Biotecnologia of the Universidade Católica Portuguesa to fulfill the requirements of Master of Science degree in Applied Microbiology ___________________________________ by Ana Cláudia Moutinho Gonçalves Place: Instituto de Investigação e Inovação em Saúde (i3S) Supervision: Dr. Didier Cabanes Co-Supervision: Dra. Rita Pombinho September 2019 II RESUMO As doenças infeciosas são uma das principais causas de morte mundialmente, sendo a principal em bebés e crianças. Embora os tratamentos convencionais para combater infeções microbianas sejam muito eficazes, geram subpopulações bacterianas resistentes. O controlo da virulência bacteriana e a modulação da resposta do hospedeiro surgem como alternativas terapêuticas promissoras para combater as infeções. Listeria monocytogenes é uma ameaça recorrente para a saúde pública e para a indústria alimentar. É um patogénio Gram-positivo e intracelular de origem alimentar e um excelente modelo para o estudo da interação do hospedeiro com o patogénio. Esta bactéria tem a capacidade de atravessar as barreiras intestinal, hematoencefálica e materno-fetal e colonizar tecidos do hospedeiro podendo causar listeriose. Esta capacidade é alcançada através da expressão de inúmeros fatores de virulência que permite L. monocytogenes invadir, sobreviver e multiplicar dentro de células fagocíticas e não-fagocíticas. A análise do modo como este patogénio manipula as funções celulares do hospedeiro, leva à identificação de novos mecanismos que podem ser alargados a outros patogénios relevantes e ajuda na criação de novas estratégias terapêuticas. Deste modo, este trabalho teve como objetivo identificar e caracterizar novos mecanismos de virulência de L.
    [Show full text]