Species in a Bucket
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Edna Assay Development
Environmental DNA assays available for species detection via qPCR analysis at the U.S.D.A Forest Service National Genomics Center for Wildlife and Fish Conservation (NGC). Asterisks indicate the assay was designed at the NGC. This list was last updated in June 2021 and is subject to change. Please contact [email protected] with questions. Family Species Common name Ready for use? Mustelidae Martes americana, Martes caurina American and Pacific marten* Y Castoridae Castor canadensis American beaver Y Ranidae Lithobates catesbeianus American bullfrog Y Cinclidae Cinclus mexicanus American dipper* N Anguillidae Anguilla rostrata American eel Y Soricidae Sorex palustris American water shrew* N Salmonidae Oncorhynchus clarkii ssp Any cutthroat trout* N Petromyzontidae Lampetra spp. Any Lampetra* Y Salmonidae Salmonidae Any salmonid* Y Cottidae Cottidae Any sculpin* Y Salmonidae Thymallus arcticus Arctic grayling* Y Cyrenidae Corbicula fluminea Asian clam* N Salmonidae Salmo salar Atlantic Salmon Y Lymnaeidae Radix auricularia Big-eared radix* N Cyprinidae Mylopharyngodon piceus Black carp N Ictaluridae Ameiurus melas Black Bullhead* N Catostomidae Cycleptus elongatus Blue Sucker* N Cichlidae Oreochromis aureus Blue tilapia* N Catostomidae Catostomus discobolus Bluehead sucker* N Catostomidae Catostomus virescens Bluehead sucker* Y Felidae Lynx rufus Bobcat* Y Hylidae Pseudocris maculata Boreal chorus frog N Hydrocharitaceae Egeria densa Brazilian elodea N Salmonidae Salvelinus fontinalis Brook trout* Y Colubridae Boiga irregularis Brown tree snake* -
Three New Pupfish Species, Cyprinodon (Teleostei, Cyprinodontidae), from Chihuahua, México, and Arizona, USA Author(S): W
Three New Pupfish Species, Cyprinodon (Teleostei, Cyprinodontidae), from Chihuahua, México, and Arizona, USA Author(s): W. L. Minckley, Robert Rush Miller and Steven Mark Norris Source: Copeia, Vol. 2002, No. 3 (Aug. 15, 2002), pp. 687-705 Published by: American Society of Ichthyologists and Herpetologists (ASIH) Stable URL: http://www.jstor.org/stable/1448150 . Accessed: 23/07/2014 15:57 Your use of the JSTOR archive indicates your acceptance of the Terms & Conditions of Use, available at . http://www.jstor.org/page/info/about/policies/terms.jsp . JSTOR is a not-for-profit service that helps scholars, researchers, and students discover, use, and build upon a wide range of content in a trusted digital archive. We use information technology and tools to increase productivity and facilitate new forms of scholarship. For more information about JSTOR, please contact [email protected]. American Society of Ichthyologists and Herpetologists (ASIH) is collaborating with JSTOR to digitize, preserve and extend access to Copeia. http://www.jstor.org This content downloaded from 128.123.44.23 on Wed, 23 Jul 2014 15:57:21 PM All use subject to JSTOR Terms and Conditions Copeia,2002(3), pp. 687-705 Three New Pupfish Species, Cyprinodon(Teleostei, Cyprinodontidae), from Chihuahua, Mexico, and Arizona, USA W. L. MINCKLEY,ROBERT RUSH MILLER,AND STEVENMARK NORRIS Three new species of Cyprinodon(Teleostei, Cyprinodontidae)are described,each long recognized as distinct. Cyprinodonpisteri occupies a varietyof systems and hab- itats in the Lago de Guzmin complex basin in northern Chihuahua,Mexico. It is distinguishedby its dusky to black dorsal fin and narrowor inconspicuousterminal bar on the caudal fin in mature males. -
Distribution of Amargosa River Pupfish (Cyprinodon Nevadensis Amargosae) in Death Valley National Park, CA
California Fish and Game 103(3): 91-95; 2017 Distribution of Amargosa River pupfish (Cyprinodon nevadensis amargosae) in Death Valley National Park, CA KRISTEN G. HUMPHREY, JAMIE B. LEAVITT, WESLEY J. GOLDSMITH, BRIAN R. KESNER, AND PAUL C. MARSH* Native Fish Lab at Marsh & Associates, LLC, 5016 South Ash Avenue, Suite 108, Tempe, AZ 85282, USA (KGH, JBL, WJG, BRK, PCM). *correspondent: [email protected] Key words: Amargosa River pupfish, Death Valley National Park, distribution, endangered species, monitoring, intermittent streams, range ________________________________________________________________________ Amargosa River pupfish (Cyprinodon nevadensis amargosae), is one of six rec- ognized subspecies of Amargosa pupfish (Miller 1948) and survives in waters embedded in a uniquely harsh environment, the arid and hot Mojave Desert (Jaeger 1957). All are endemic to the Amargosa River basin of southern California and Nevada (Moyle 2002). Differing from other spring-dwelling subspecies of Amargosa pupfish (Cyprinodon ne- vadensis), Amargosa River pupfish is riverine and the most widely distributed, the extent of which has been underrepresented prior to this study (Moyle et al. 2015). Originating on Pahute Mesa, Nye County, Nevada, the Amargosa River flows intermittently, often under- ground, south past the towns of Beatty, Shoshone, and Tecopa and through the Amargosa River Canyon before turning north into Death Valley National Park and terminating at Badwater Basin (Figure 1). Amargosa River pupfish is data deficient with a distribution range that is largely unknown. The species has been documented in Tecopa Bore near Tecopa, Inyo County, CA (Naiman 1976) and in the Amargosa River Canyon, Inyo and San Bernardino Counties, CA (Williams-Deacon et al. -
The Extinction of the Catarina Pupfish Megupsilon Aporus and the Implications for the Conservation of Freshwater Fish in Mexico
The extinction of the Catarina pupfish Megupsilon aporus and the implications for the conservation of freshwater fish in Mexico A RCADIO V ALDÉS G ONZÁLEZ,LOURDES M ARTÍNEZ E STÉVEZ M A .ELENA Á NGELES V ILLEDA and G ERARDO C EBALLOS Abstract Extinctions are occurring at an unprecedented ; Régnier et al., ). Since the start of the st century it rate as a consequence of human activities. Vertebrates con- has become clear that population depletion and extinction stitute the best-known group of animals, and thus the group of both freshwater and marine fishes is a severe and wide- for which there are more accurate estimates of extinctions. spread problem (e.g. Ricciardi & Rasmussen, ; Myers Among them, freshwater fishes are particularly threatened &Worm,; Olden et al., ; Burkhead, ). and many species are declining. Here we report the extinc- Extinction of freshwater fishes has been relatively well tion of an endemic freshwater fish of Mexico, the Catarina documented in North America (e.g. Miller et al., ; pupfish Megupsilon aporus, the sole species of the genus Burkhead, ). A compilation of the conservation status Megupsilon. We present a synopsis of the discovery and de- of freshwater fishes in Mexico has revealed that species scription of the species, the threats to, and degradation of, its have become extinct in the wild or have been extirpated habitat, and the efforts to maintain the species in captivity from the country, and . (% of all species in before it became extinct in . The loss of the Catarina Mexico) are facing extinction (IUCN, ; Ceballos et al., pupfish has evolutionary and ecological implications, and b; Table ). -
Extinction Rates in North American Freshwater Fishes, 1900–2010 Author(S): Noel M
Extinction Rates in North American Freshwater Fishes, 1900–2010 Author(s): Noel M. Burkhead Source: BioScience, 62(9):798-808. 2012. Published By: American Institute of Biological Sciences URL: http://www.bioone.org/doi/full/10.1525/bio.2012.62.9.5 BioOne (www.bioone.org) is a nonprofit, online aggregation of core research in the biological, ecological, and environmental sciences. BioOne provides a sustainable online platform for over 170 journals and books published by nonprofit societies, associations, museums, institutions, and presses. Your use of this PDF, the BioOne Web site, and all posted and associated content indicates your acceptance of BioOne’s Terms of Use, available at www.bioone.org/page/terms_of_use. Usage of BioOne content is strictly limited to personal, educational, and non-commercial use. Commercial inquiries or rights and permissions requests should be directed to the individual publisher as copyright holder. BioOne sees sustainable scholarly publishing as an inherently collaborative enterprise connecting authors, nonprofit publishers, academic institutions, research libraries, and research funders in the common goal of maximizing access to critical research. Articles Extinction Rates in North American Freshwater Fishes, 1900–2010 NOEL M. BURKHEAD Widespread evidence shows that the modern rates of extinction in many plants and animals exceed background rates in the fossil record. In the present article, I investigate this issue with regard to North American freshwater fishes. From 1898 to 2006, 57 taxa became extinct, and three distinct populations were extirpated from the continent. Since 1989, the numbers of extinct North American fishes have increased by 25%. From the end of the nineteenth century to the present, modern extinctions varied by decade but significantly increased after 1950 (post-1950s mean = 7.5 extinct taxa per decade). -
Morphological Divergence of Native and Recently Established Populations of White Sands Pupfish (Cyprinodon Tularosa) Author(S): Michael L
Morphological Divergence of Native and Recently Established Populations of White Sands Pupfish (Cyprinodon tularosa) Author(s): Michael L. Collyer, James M. Novak, Craig A. Stockwell Source: Copeia, Vol. 2005, No. 1 (Feb. 24, 2005), pp. 1-11 Published by: American Society of Ichthyologists and Herpetologists Stable URL: http://www.jstor.org/stable/4098615 . Accessed: 13/01/2011 13:16 Your use of the JSTOR archive indicates your acceptance of JSTOR's Terms and Conditions of Use, available at . http://www.jstor.org/page/info/about/policies/terms.jsp. JSTOR's Terms and Conditions of Use provides, in part, that unless you have obtained prior permission, you may not download an entire issue of a journal or multiple copies of articles, and you may use content in the JSTOR archive only for your personal, non-commercial use. Please contact the publisher regarding any further use of this work. Publisher contact information may be obtained at . http://www.jstor.org/action/showPublisher?publisherCode=asih. Each copy of any part of a JSTOR transmission must contain the same copyright notice that appears on the screen or printed page of such transmission. JSTOR is a not-for-profit service that helps scholars, researchers, and students discover, use, and build upon a wide range of content in a trusted digital archive. We use information technology and tools to increase productivity and facilitate new forms of scholarship. For more information about JSTOR, please contact [email protected]. American Society of Ichthyologists and Herpetologists is collaborating with JSTOR to digitize, preserve and extend access to Copeia. http://www.jstor.org 2005, No. -
Compare and Contrast the Water Environment Between Death Valley Pupfish Specie and Devil’S Hole Pupfish Specie
Compare and Contrast the Water environment between Death Valley Pupfish Specie and Devil’s Hole Pupfish Specie By Roy Tianran Gao 1 Table of Contents Title page 1 Abstract 3 Introduction and Background 3 Water Temperature 4 Salinity 6 Water Level 7 Conservation 10 Conclusion 11 References 12 2 ABSTRACT The two types of pupfish (Cyprinodon) in Death Valley National Park are Death Valley pupfish and Devil’s Hole pupfish. Death Valley pupfish has been existed over 10,000 years and Devil’s Hole pupfish has been existed for over 20,000 years. Both of the pupfishes are endangered species. The average number of Death Valley pupfish has decreased by about 100 since 1990s, and the number of Devil’s Hole pupfish has decreased by 400 since 1995. Comparing the water level, water temperature and the water salinity between the two species of pupfish would help to define the living requirements and reason of decreasing population. The research toward the result is based on 7 journal articles, 4 websites, and 1 book. As the result shows, Death Valley Pupfish and Devil’s Hole Pupfish live in different water environments and functioned differently. Understanding the water environment of the two types of pupfishes will help people building new habitats for pupfishes and increase their population so that would be possible to avoid the extinction of pupfishes from the earth. INTRODUCTION AND BACKGROUND Pupfish is a small killifish in the Southwest of America. There are five pupfish species in Death Valley which are Armargosa pupfish, Saratoga Pupfish, Devil’s Hole pupfish, Death Valley pupfish, and Cotton ball Marsh pupfish (National Park Service, 2008). -
The Endangered White Sands Pupfish (Cyprinodon Tularosa)
The Endangered White Sands pupfish (Cyprinodon tularosa) genome reveals low diversity and heterogenous patterns of differentiation Andrew Black1, Janna Willoughby2, Anna Br¨uniche-Olsen3, Brian Pierce4, and Andrew DeWoody1 1Purdue University 2Auburn University 3University of Copenhagen 4Texas A and M University College Station November 24, 2020 Abstract The White Sands pupfish (Cyprinodon tularosa), endemic to New Mexico in Southwestern North America, is of conservation concern due in part to invasive species, chemical pollution, and groundwater withdrawal. Herein, we developed a high quality draft reference genome and use it to provide biological insights into the evolution and conservation of C. tularosa. Specifically, we localized microsatellite markers previously used to demarcate Evolutionary Significant Units, evaluated the possibility of introgression into the C. tularosa genome, and compared genomic diversity among related species. The de novo assembly of PacBio Sequel II error-corrected reads resulted in a 1.08Gb draft genome with a contig N50 of 1.4Mb and 25,260 annotated protein coding genes, including 95% of the expected Actinopterigii conserved orthologs. Many of the previously described C. tularosa microsatellite markers fell within or near genes and exhibited a pattern of increased heterozygosity near genic areas compared to those in intergenic regions. Genetic distances between C. tularosa and the widespread invasive species C. variegatus, which diverged ~1.6-4.7 MYA, were 0.027 (nuclear) and 0.022 (mitochondrial). Nuclear alignments revealed putative tracts of introgression that merit further investigation. Genome-wide heterozygosity was markedly lower in C. tularosa compared to estimates from related species, likely because of smaller long-term effective population sizes constrained by their isolated and limited habitat. -
10842 Federal Fhgister / Vol. 51, No. 61 / Monday, March 31, 1988 / Rules and Regulations
10842 Federal Fhgister / Vol. 51, No. 61 / Monday, March 31, 1988 / Rules and Regulations DEPARTMENT OF THE JNTERJOR Fish and Wildlife Ssrviw 50 CFR Part 17 Endangered and Threatensd Wildllfe and plant% Detsm&mtion of Endangered Status end Crltkal Habitat for the Desefi Pupfish AGENCY: Fish and Wildlife Service, Interior. ACTNN Final ruie. SUMMARY The Service,determines the desert pupfish [Cyprinodon macuiarius] to be an endangered species. Critical habitat is also designated for this species in Imperial County, California, and Pima County, Arizona. Viable, self- Federal Register / Vol. 51, No. 61 / Monday, March 31, 1986 / Rules and Regulations 10843 /- sustaining populations of desert pupfish wetland San Sebastian Marsh, Imperial New Mexico. These fish were obtained are now believed to exist in only two of County, and Salt, Creek. Riverside from Santa Clara Slgugh. They are being the historic habitats in the United County) and a few shoreline pools and maintained in that facility for use in States. The remaining populations in irrigation drains along the Salton Sea in research and for future reintroduction Mexico are also reported to be declining Imperial and Riverside Counties. In efforts in Arizona. or vulnerable. The surviving natural Arizona, it still inhabits Quitobaquito Desert pupfish-were recently populations are impacted by Spring within the Organ Pipe Cactus introduced into one natural and two competition from exotic fishes for food National Monument in Pima County. manmade spring habitats on Bureau of and space, predation by exotic fishes, The species is also believed to inhabit Land Management (BLM) land in water pollution, ground-water pumping, the Colorado River system in the Rio Arizona. -
Review Article Cyprinodontid Fishes of the World
Archive ofIran. SID J. Ichthyol. (March 2018), 5(1): 1–29 Received: January 5, 2018 © 2018 Iranian Society of Ichthyology Accepted: March 1, 2018 P-ISSN: 2383-1561; E-ISSN: 2383-0964 doi: 10.22034/iji.v5i1.267 http://www.ijichthyol.org Review Article Cyprinodontid fishes of the world: an updated list of taxonomy, distribution and conservation status (Teleostei: Cyprinodontoidea) Hamid Reza ESMAEILI1*, Tayebeh ASRAR1, Ali GHOLAMIFARD2 1Ichthyology and Molecular Systematics Research Laboratory, Zoology Section, Department of Biology, College of Sciences, Shiraz University, Shiraz, Iran. 2Department of Biology, Faculty of Sciences, Lorestan University, 6815144316 Khorramabad, Iran. Email: [email protected] Abstract: This checklist aims to list all the reported cyprinodontid fishes (superfamily Cyprinodontoidea/pupfishes) of the world. It lists 141 species in 8 genera and 4 families. The most diverse family is Cyprinodontidae (54 species, 38%), followed by Orestiidae (45 species, 32%), Aphaniidae (39 species, 28%), and Cubanichthyidae (3 species, 2%). Among 141 listed species, 73 (51.8%) species are Not Evaluated (NE), 15 (10.6%) Least Concern (LC), 9 (6.4%) Vulnerable (VU), 3 (2.1%) Data Deficient (DD), 11 (7.8%) Critically Endangered (CR), 4 (2.8%) Near Threatened (NT), 18 (12.8%) Endangered (EN), 3 (2.1%) Extinct in the Wild (EW) and 5 (3.5%) Extinct of the Red List of IUCN. They inhabit in the fresh, brackish and marine waters of the United States, Middle America, the West Indies, parts of northern South America, North Africa, the Mediterranean Anatolian region, coastal areas of the Persian Gulf and Makran Sea (Oman Sea), the northern Arabian Sea east to Gujarat in India, and some endorheic basins of Iran, Pakistan and the Arabian Peninsula. -
Draft Safe Harbor Agreement
SAFE HARBOR AGREEMENT WITH THE BISHOP PAIUTE TRIBE FOR OWENS PUPFISH (Cyprinodon radiosus), INYO COUNTY, CALIFORNIA Prepared by Bishop Paiute Tribe, Environmental Management Office and U.S. Fish and Wildlife Service, Ventura Fish and Wildlife Office March 2014 TABLE OF CONTENTS 1.0 INTRODUCTION ............................................................................................................... 1 2.0 SPECIES COVERED BY THIS AGREEMENT ................................................................ 3 3.0 DESCRIPTION OF ENROLLED PROPERTY .................................................................. 5 4.0 BASELINE DETERMINATION ........................................................................................ 8 5.0 MANAGEMENT ACTIVITIES ........................................................................................ 11 6.0 INCIDENTAL TAKE OF COVERED SPECIES ............................................................. 15 7.0 NET CONSERVATION BENEFIT .................................................................................. 20 8.0 RESPONSIBILITIES OF THE PARTIES ........................................................................ 21 9.0 AGREEMENT AND PERMIT DURATION .................................................................... 23 10.0 ASSURANCES TO THE TRIBE REGARDING TAKE OF COVERED SPECIES ....... 23 11.0 MODIFICATIONS ............................................................................................................ 23 12.0 OTHER MEASURES ....................................................................................................... -
Owens Pupfish (Cyprinodon Radiosus) 5-Year Review
Owens Pupfish (Cyprinodon radiosus) 5-Year Review: Summary and Evaluation Photo by Billy Perry, CSUMB U.S. Fish and Wildlife Service Ventura Fish and Wildlife Office Ventura, California January 2009 5-YEAR REVIEW Owens Pupfish (Cyprinodon radiosus) I. GENERAL INFORMATION Purpose of 5-Year Reviews: The U.S. Fish and Wildlife Service (Service) is required by section 4(c)(2) of the Endangered Species Act of 1973 (Act) to conduct a status review of each listed species at least once every 5 years. The purpose of a 5-year review is to evaluate whether or not the species’ status has changed since it was listed (or since the most recent 5-year review). Based on the 5-year review, we recommend whether the species should be removed from the list of endangered and threatened species, be changed in status from endangered to threatened, or be changed in status from threatened to endangered. Our original listing of a species as endangered or threatened is based on the existence of threats attributable to one or more of the five threat factors described in section 4(a)(1) of the Act, and we must consider these same five factors in any subsequent consideration of reclassification or delisting of a species. In the 5-year review, we consider the best available scientific and commercial data on the species, and focus on new information available since the species was listed or last reviewed. If we recommend a change in listing status based on the results of the 5-year review, we must propose to do so through a separate rule-making process defined in the Act that includes public review and comment.