Research Article Changes in the Expression of Mitochondrial Morphology-Related Genes During the Differentiation of Murine Embryonic Stem Cells

Total Page:16

File Type:pdf, Size:1020Kb

Research Article Changes in the Expression of Mitochondrial Morphology-Related Genes During the Differentiation of Murine Embryonic Stem Cells Hindawi Stem Cells International Volume 2020, Article ID 9369268, 12 pages https://doi.org/10.1155/2020/9369268 Research Article Changes in the Expression of Mitochondrial Morphology-Related Genes during the Differentiation of Murine Embryonic Stem Cells Jeong Eon Lee,1 Bong Jong Seo,1 Min Ji Han,1 Yean Ju Hong,1 Kwonho Hong,1 Hyuk Song,1 Jeong Woong Lee ,2 and Jeong Tae Do 1 1Department of Stem Cell and Regenerative Biotechnology, KU Institute of Science and Technology, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul 05029, Republic of Korea 2Biotherapeutics Translational Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 305-806, Republic of Korea Correspondence should be addressed to Jeong Tae Do; [email protected] Jeong Eon Lee and Bong Jong Seo contributed equally to this work. Received 22 August 2019; Revised 17 December 2019; Accepted 7 January 2020; Published 28 January 2020 Academic Editor: Heinrich Sauer Copyright © 2020 Jeong Eon Lee et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. During embryonic development, cells undergo changes in gene expression, signaling pathway activation/inactivation, metabolism, and intracellular organelle structures, which are mediated by mitochondria. Mitochondria continuously switch their morphology between elongated tubular and fragmented globular via mitochondrial fusion and fission. Mitochondrial fusion is mediated by proteins encoded by Mfn1, Mfn2, and Opa1, whereas mitochondrial fission is mediated by proteins encoded by Fis1 and Dnm1L. Here, we investigated the expression patterns of mitochondria-related genes during the differentiation of mouse embryonic stem cells (ESCs). Pluripotent ESCs maintain stemness in the presence of leukemia inhibitory factor (LIF) via the JAK-STAT3 pathway but lose pluripotency and differentiate in response to the withdrawal of LIF. We analyzed the expression levels of mitochondrial fusion- and fission-related genes during the differentiation of ESCs. We hypothesized that mitochondrial fusion genes would be overexpressed while the fission genes would be downregulated during the differentiation of ESCs. Though the mitochondria exhibited an elongated morphology in ESCs differentiating in response to LIF withdrawal, only the expression of Mfn2 was increased and that of Dnm1L was decreased as expected, the other exceptions being Mfn1, Opa1, and Fis1. Next, by comparing gene expression and mitochondrial morphology, we proposed an index that could precisely represent mitochondrial changes during the differentiation of pluripotent stem cells by analyzing the expression ratios of three fusion- and two fission- related genes. Surprisingly, increased Mfn2/Dnm1L ratio was correlated with elongation of mitochondria during the differentiation of ESCs. Moreover, application of this index to other specialized cell types revealed that neural stems cells (NSCs) and mouse embryonic fibroblasts (MEFs) showed increased Mfn2/Dnm1L ratio compared to ESCs. Thus, we suggest that the Mfn2/Dnm1L ratio could reflect changes in mitochondrial morphology according to the extent of differentiation. 1. Introduction [7]. For example, Folmes et al. showed that the globular shape of mitochondria progressively changed to elongated During embryonic development, cells undergo various during embryonic development from zygote to somite changes in gene expression [1, 2] and signaling pathways embryo. Accordingly, metabolic features such as pyruvate [3]. Metabolism and intracellular organelle structures are oxidation, glucose oxidation, glycolysis, and the pentose also altered during development and differentiation [4–6]. phosphate pathway (PPP) were also changed dynamically Specifically, the organellar changes are observed during the [6]. These features return to the developmental early-stage regaining of pluripotency (also known as reprogramming) status during the reprogramming process [8]. Some of the 2 Stem Cells International most dramatic changes in cells during development and dif- differentiate, they require more energy to meet the demands ferentiation occur in the mitochondria, which play essential of their newly acquired functions [6]. roles in cellular processes, including energy metabolism [9], Accordingly, mitochondria undergo dynamic remodeling apoptosis [10], aging [11], reactive oxygen species produc- during differentiation, and thus, mitochondrial morphology tion, calcium homeostasis, and differentiation [12]. and metabolism are changed. Therefore, we hypothesized Mitochondria continuously change their morphology that expression of mitochondrial fusion- and fission-related through fusion and fission in response to cellular require- genes may be changed toward a certain direction during the ments, which is the crux of mitochondrial quality control. spontaneous differentiation of ESCs. Here, we quantified In addition, mitochondria increase their population through the expression levels of the fusion-related genes Mfn1, self-division from the existing mitochondria; this is called Mfn2, and Opa1 and the fission-related genes Fis1 and mitochondrial biogenesis [13–16]. Mitochondrial dynamics Dnm1L during the differentiation of murine ESCs. Here, we and biogenesis vary by cell type and cellular environment. investigated these genes to determine whether they could be In addition, the quality and quantity of mitochondria can used as an index of the extent of differentiation and changes affect the cellular behavior and play a pivotal role in cell in mitochondrial morphology. metabolism [17]. In preimplantation embryonic and pluripotent stem 2. Materials and Methods cells, immature mitochondria characterized by a small and globular shape with poorly developed cristae are observed All methods used in this study were carried out in accordance [14, 18, 19]. Cells with immature mitochondria show low with animal care and use guidelines, and all experimental oxygen consumption and high levels of glycolytic enzymes protocols were approved by the Institutional Animal Care [20]. Thus, undifferentiated embryonic stem cells (ESCs) also and Use Committee of Konkuk University. exhibit low levels of ATP production, modest levels of antiox- idant enzymes, and poor oxidant capacity [14, 19, 20]. Upon 2.1. Cell Cultures. Mouse ESCs (E14tg2a) were purchased differentiation of ESCs, mitochondria in these cells become from the American Type Culture Collection (ATCC, Manas- elongated, showing developed cristae and dense matrices sas, VA, USA) and cultured on culture dishes layered with [21]; this results in high oxygen consumption and ATP pro- inactivated MEFs in an ESC medium, consisting of Dulbec- duction for more efficient cellular activity [14, 18, 19]. co’s modified Eagle’s medium (DMEM; Gibco) supple- In mammals, mitochondrial morphology switches mented with 15% fetal bovine serum (FBS; HyClone), 1× between elongated tubular and fragmented globular by Penicillin/Streptomycin/Glutamine (P/S/G; Gibco), 0.1 mM fusion and fission, respectively [22, 23]. Mitochondrial fusion nonessential amino acids (NEAAs; Gibco), and 1 mM β-mer- is mediated by the dynamin family GTPases, such as mitofu- captoethanol (Gibco) with 1000 U/mL leukemia inhibitory sin (MFN) 1, MFN2, and optic atrophy 1 (OPA1) [24–26]. factor (ESGRO, Chemicon International). MEFs were cul- Although the exact fusion mechanism has yet to be defined, tured in culture dishes coated with 0.15% porcine gelatin MFN1 and MFN2 form a dimer that inserts itself into the (Sigma, St. Louis, MO, USA) in MEF medium consisting of mitochondrial outer membrane, whereas OPA1 is located DMEM (Gibco) supplemented with 15% FBS (HyClone), in the mitochondrial inner membrane [27, 28]. MFN1, 1x P/S/G (Gibco), 0.1 mM NEAAs (Gibco), and 1 mM MFN2, and OPA1 contain a GTPase domain, hydrophobic β-mercaptoethanol (Gibco). NSCs were cultured in culture heptad repeat (HR) domain, and transmembrane domain dishes coated with 0.15% porcine gelatin (Sigma) in NS [24, 29]. MFN1 and MFN2 play similar roles in mitochon- medium consisting of DMEM : Nutrient Mixture F-12 drial fusion and thus can functionally replace each other (Gibco), 0.5 mg/mL bovine serum albumin (BSA; Sigma), and form homotypic or heterotypic dimers [25, 30]. 1% N2 supplement (Gibco), 1x NEAAs (Gibco), 1x P/S/G In contrast, the major proteins related to mitochondrial (Gibco), 10 ng/mL basic fibroblast growth factor (bFGF; fission are FIS1 [31–33] and dynamin-related protein 1 R&D systems), and 10 ng/mL epidermal growth factor ° (DNM1L, also called DRP1) [34–36]. DNM1L is mainly (EGF; Gibco). All cell lines were incubated at 37 Cinan located in the cytosol and recruited to the outer membrane atmosphere of 5% CO2 and maintained on tissue culture of the mitochondria where it induces fission [30]. FIS1 is dishes (Corning, Amsterdam, The Netherlands). located in the outer mitochondrial membrane and is closely related to DNM1L [32, 33]. DNM1L can interact with other 2.2. In Vitro Differentiation. Pluripotent ESCs maintain mitochondrial fission proteins, including mitochondrial fis- stemness in the presence of LIF via the JAK-STAT3 pathway. sion factor (MFF) and FIS1. Interestingly, a recent study However, when this pathway is inhibited in response to LIF suggested that DNM1L can interact with the fusion protein withdrawal, pluripotent ESCs randomly differentiate into MFN and facilitate MFN-mediated fusion [30]. Although endodermal, ectodermal,
Recommended publications
  • Amyloid Β-Peptide Increases Mitochondria-Endoplasmic
    cells Article Amyloid β-Peptide Increases Mitochondria-Endoplasmic Reticulum Contact Altering Mitochondrial Function and Autophagosome Formation in Alzheimer’s Disease-Related Models Nuno Santos Leal 1,*, Giacomo Dentoni 1 , Bernadette Schreiner 1 , Luana Naia 1, Antonio Piras 1, Caroline Graff 1, Antonio Cattaneo 2, Giovanni Meli 2 , Maho Hamasaki 3, Per Nilsson 1 and Maria Ankarcrona 1,* 1 Division of Neurogeriatrics, Department of Neurobiology, Care Science and Society, Karolinska Institutet, BioClinicum J9:20, Visionsgatan 4, 171 64 Solna, Sweden; [email protected] (G.D.); [email protected] (B.S.); [email protected] (L.N.); [email protected] (A.P.); caroline.graff@ki.se (C.G.); [email protected] (P.N.) 2 European Brain Research Institute (EBRI), Viale Regina Elena 295, 00161 Roma, Italy; [email protected] (A.C.); [email protected] (G.M.) 3 Department of Genetics, Graduate School of Medicine, Osaka University, 2-2 Yamadaoka, Suita, Osaka 565-0871, Japan; [email protected] * Correspondence: [email protected] (N.S.L.); [email protected] (M.A.); Tel.: +44-122-333-4390 (N.S.L.); +46-852-483-577 (M.A.) Received: 23 October 2020; Accepted: 25 November 2020; Published: 28 November 2020 Abstract: Recent findings have shown that the connectivity and crosstalk between mitochondria and the endoplasmic reticulum (ER) at mitochondria–ER contact sites (MERCS) are altered in Alzheimer’s disease (AD) and in AD-related models. MERCS have been related to the initial steps of autophagosome formation as well as regulation of mitochondrial function. Here, the interplay between MERCS, mitochondria ultrastructure and function and autophagy were evaluated in different AD animal models with increased levels of Aβ as well as in primary neurons derived from these animals.
    [Show full text]
  • The Mitochondrial Kinase PINK1 in Diabetic Kidney Disease
    International Journal of Molecular Sciences Review The Mitochondrial Kinase PINK1 in Diabetic Kidney Disease Chunling Huang * , Ji Bian , Qinghua Cao, Xin-Ming Chen and Carol A. Pollock * Kolling Institute, Sydney Medical School, Royal North Shore Hospital, University of Sydney, St. Leonards, NSW 2065, Australia; [email protected] (J.B.); [email protected] (Q.C.); [email protected] (X.-M.C.) * Correspondence: [email protected] (C.H.); [email protected] (C.A.P.); Tel.: +61-2-9926-4784 (C.H.); +61-2-9926-4652 (C.A.P.) Abstract: Mitochondria are critical organelles that play a key role in cellular metabolism, survival, and homeostasis. Mitochondrial dysfunction has been implicated in the pathogenesis of diabetic kidney disease. The function of mitochondria is critically regulated by several mitochondrial protein kinases, including the phosphatase and tensin homolog (PTEN)-induced kinase 1 (PINK1). The focus of PINK1 research has been centered on neuronal diseases. Recent studies have revealed a close link between PINK1 and many other diseases including kidney diseases. This review will provide a concise summary of PINK1 and its regulation of mitochondrial function in health and disease. The physiological role of PINK1 in the major cells involved in diabetic kidney disease including proximal tubular cells and podocytes will also be summarized. Collectively, these studies suggested that targeting PINK1 may offer a promising alternative for the treatment of diabetic kidney disease. Keywords: PINK1; diabetic kidney disease; mitochondria; mitochondria quality control; mitophagy Citation: Huang, C.; Bian, J.; Cao, Q.; 1. Introduction Chen, X.-M.; Pollock, C.A.
    [Show full text]
  • Seq2pathway Vignette
    seq2pathway Vignette Bin Wang, Xinan Holly Yang, Arjun Kinstlick May 19, 2021 Contents 1 Abstract 1 2 Package Installation 2 3 runseq2pathway 2 4 Two main functions 3 4.1 seq2gene . .3 4.1.1 seq2gene flowchart . .3 4.1.2 runseq2gene inputs/parameters . .5 4.1.3 runseq2gene outputs . .8 4.2 gene2pathway . 10 4.2.1 gene2pathway flowchart . 11 4.2.2 gene2pathway test inputs/parameters . 11 4.2.3 gene2pathway test outputs . 12 5 Examples 13 5.1 ChIP-seq data analysis . 13 5.1.1 Map ChIP-seq enriched peaks to genes using runseq2gene .................... 13 5.1.2 Discover enriched GO terms using gene2pathway_test with gene scores . 15 5.1.3 Discover enriched GO terms using Fisher's Exact test without gene scores . 17 5.1.4 Add description for genes . 20 5.2 RNA-seq data analysis . 20 6 R environment session 23 1 Abstract Seq2pathway is a novel computational tool to analyze functional gene-sets (including signaling pathways) using variable next-generation sequencing data[1]. Integral to this tool are the \seq2gene" and \gene2pathway" components in series that infer a quantitative pathway-level profile for each sample. The seq2gene function assigns phenotype-associated significance of genomic regions to gene-level scores, where the significance could be p-values of SNPs or point mutations, protein-binding affinity, or transcriptional expression level. The seq2gene function has the feasibility to assign non-exon regions to a range of neighboring genes besides the nearest one, thus facilitating the study of functional non-coding elements[2]. Then the gene2pathway summarizes gene-level measurements to pathway-level scores, comparing the quantity of significance for gene members within a pathway with those outside a pathway.
    [Show full text]
  • Identification and Characterization of TPRKB Dependency in TP53 Deficient Cancers
    Identification and Characterization of TPRKB Dependency in TP53 Deficient Cancers. by Kelly Kennaley A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy (Molecular and Cellular Pathology) in the University of Michigan 2019 Doctoral Committee: Associate Professor Zaneta Nikolovska-Coleska, Co-Chair Adjunct Associate Professor Scott A. Tomlins, Co-Chair Associate Professor Eric R. Fearon Associate Professor Alexey I. Nesvizhskii Kelly R. Kennaley [email protected] ORCID iD: 0000-0003-2439-9020 © Kelly R. Kennaley 2019 Acknowledgements I have immeasurable gratitude for the unwavering support and guidance I received throughout my dissertation. First and foremost, I would like to thank my thesis advisor and mentor Dr. Scott Tomlins for entrusting me with a challenging, interesting, and impactful project. He taught me how to drive a project forward through set-backs, ask the important questions, and always consider the impact of my work. I’m truly appreciative for his commitment to ensuring that I would get the most from my graduate education. I am also grateful to the many members of the Tomlins lab that made it the supportive, collaborative, and educational environment that it was. I would like to give special thanks to those I’ve worked closely with on this project, particularly Dr. Moloy Goswami for his mentorship, Lei Lucy Wang, Dr. Sumin Han, and undergraduate students Bhavneet Singh, Travis Weiss, and Myles Barlow. I am also grateful for the support of my thesis committee, Dr. Eric Fearon, Dr. Alexey Nesvizhskii, and my co-mentor Dr. Zaneta Nikolovska-Coleska, who have offered guidance and critical evaluation since project inception.
    [Show full text]
  • A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
    Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated.
    [Show full text]
  • 2328.Full.Pdf
    Altered interplay between endoplasmic reticulum and mitochondria in Charcot–Marie–Tooth type 2A neuropathy Nathalie Bernard-Marissala,b,1, Gerben van Hamerenc, Manisha Junejad,e, Christophe Pellegrinof, Lauri Louhivuorig, Luca Bartesaghih,i, Cylia Rochata, Omar El Mansoura, Jean-Jacques Médardh,i, Marie Croisierj, Catherine Maclachlanj, Olivier Poirotk, Per Uhléng, Vincent Timmermand,e, Nicolas Tricaudc, Bernard L. Schneidera,1,2, and Roman Chrasth,i,1,2 aBrain Mind Institute, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland; bMarseille Medical Genetics, INSERM, Aix-Marseille Univ, 13385 Marseille, France; cINSERM U1051, Institut des Neurosciences de Montpellier, Université de Montpellier, 34295 Montpellier, France; dPeripheral Neuropathy Research Group, Department of Biomedical Sciences, University of Antwerp, 2610 Antwerp, Belgium; eInstitute Born Bunge, 2610 Antwerp, Belgium; fInstitut de Neurobiologie de la Méditerranée, INSERM, Aix-Marseille Univ, 13009 Marseille, France; gDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, 17177 Stockholm, Sweden; hDepartment of Neuroscience, Karolinska Institutet, 17177 Stockholm, Sweden; iDepartment of Clinical Neuroscience, Karolinska Institutet, 17177 Stockholm, Sweden; jCentre of Interdisciplinary Electron Microscopy, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland; and kDepartment of Medical Genetics, University of Lausanne, 1005 Lausanne, Switzerland Edited by Stephen T. Warren, Emory University School of Medicine, Atlanta, GA, and approved December 14, 2018 (received for review June 26, 2018) Mutations in the MFN2 gene encoding Mitofusin 2 lead to the axons (8). However, the long-term progression of the disease and development of Charcot–Marie–Tooth type 2A (CMT2A), a domi- the mechanisms underlying motor and/or sensory dysfunction nant axonal form of peripheral neuropathy. Mitofusin 2 is local- have not been fully characterized in this model.
    [Show full text]
  • Structural Insights Into Oligomerization and Mitochondrial Remodeling of Dynamin 1-Like Protein
    Structural insights into oligomerization and mitochondrial remodeling of dynamin 1-like protein Dissertation zur Erlangung des akademischen Grades des Doktors der Naturwissenschaften (Dr. rer. nat.) eingereicht im Fachbereich Biologie, Chemie, Pharmazie der Freien Universität Berlin vorgelegt von Dipl.-Ing. Chris Fröhlich aus der Lutherstadt Eisleben Berlin 2013 ii Die vorliegende Arbeit wurde im Zeitraum April 2009 bis März 2013 am Max-Delbrück-Centrum für Molekulare Medizin Berlin-Buch unter Anleitung von PROF. DR. OLIVER DAUMKE angefertigt. 1. Gutachter: Prof. Dr. Udo Heinemann 2. Gutachter: Prof. Dr. Oliver Daumke Tag der Disputation: 29.07.2013 iii … to boldly go where no man has gone before. iv Contents ___________________________________________________________________________ Contents Contents ................................................................................................................................................... v List of Figures ........................................................................................................................................... ix List of Tables ............................................................................................................................................ xi 1. Introduction ..................................................................................................................................... 1 1.1. Mitochondria ..........................................................................................................................
    [Show full text]
  • Supporting Information
    Supporting Information Pouryahya et al. SI Text Table S1 presents genes with the highest absolute value of Ricci curvature. We expect these genes to have significant contribution to the network’s robustness. Notably, the top two genes are TP53 (tumor protein 53) and YWHAG gene. TP53, also known as p53, it is a well known tumor suppressor gene known as the "guardian of the genome“ given the essential role it plays in genetic stability and prevention of cancer formation (1, 2). Mutations in this gene play a role in all stages of malignant transformation including tumor initiation, promotion, aggressiveness, and metastasis (3). Mutations of this gene are present in more than 50% of human cancers, making it the most common genetic event in human cancer (4, 5). Namely, p53 mutations play roles in leukemia, breast cancer, CNS cancers, and lung cancers, among many others (6–9). The YWHAG gene encodes the 14-3-3 protein gamma, a member of the 14-3-3 family proteins which are involved in many biological processes including signal transduction regulation, cell cycle pro- gression, apoptosis, cell adhesion and migration (10, 11). Notably, increased expression of 14-3-3 family proteins, including protein gamma, have been observed in a number of human cancers including lung and colorectal cancers, among others, suggesting a potential role as tumor oncogenes (12, 13). Furthermore, there is evidence that loss Fig. S1. The histogram of scalar Ricci curvature of 8240 genes. Most of the genes have negative scalar Ricci curvature (75%). TP53 and YWHAG have notably low of p53 function may result in upregulation of 14-3-3γ in lung cancer Ricci curvatures.
    [Show full text]
  • A Mutation in the Mitochondrial Fission Gene Dnm1l Leads to Cardiomyopathy
    A Mutation in the Mitochondrial Fission Gene Dnm1l Leads to Cardiomyopathy Houman Ashrafian1, Louise Docherty2, Vincenzo Leo3, Christopher Towlson2, Monica Neilan2, Violetta Steeples1, Craig A. Lygate1, Tertius Hough3, Stuart Townsend3, Debbie Williams4, Sara Wells4, Dominic Norris4, Sarah Glyn-Jones5, John Land6, Ivana Barbaric7, Zuzanne Lalanne4, Paul Denny4, Dorota Szumska1, Shoumo Bhattacharya1, Julian L. Griffin5, Iain Hargreaves6, Narcis Fernandez-Fuentes3, Michael Cheeseman4, Hugh Watkins1, T. Neil Dear2,3,4* 1 Department of Cardiovascular Medicine and Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, United Kingdom, 2 Mammalian Genetics of Disease Unit, School of Medicine, University of Sheffield, Sheffield, United Kingdom, 3 Leeds Institute of Molecular Medicine, Wellcome Trust Brenner Building, St. James’s University Hospital, Leeds, United Kingdom, 4 Mary Lyon Centre and Mammalian Genetics Unit, Medical Research Council, Harwell, United Kingdom, 5 Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom, 6 Neurometabolic Unit, National Hospital, London, United Kingdom, 7 Department of Biomedical Science, University of Sheffield, Sheffield, United Kingdom Abstract Mutations in a number of genes have been linked to inherited dilated cardiomyopathy (DCM). However, such mutations account for only a small proportion of the clinical cases emphasising the need for alternative discovery approaches to uncovering novel pathogenic mutations in hitherto unidentified pathways. Accordingly, as part
    [Show full text]
  • Mitochondrial Dynamic Abnormalities in Alzheimer's Disease Sirui Jiang Case Western Reserve University
    MITOCHONDRIAL DYNAMIC ABNORMALITIES IN ALZHEIMER’S DISEASE by SIRUI JIANG Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy Dissertation Advisor: Dr. Xiongwei Zhu Department of Pathology CASE WESTERN RESERVE UNIVERSITY January 2019 CASE WESTERN RESERVE UNIVERSITY SCHOOL OF GRADUATE STUDIES We hereby approve the thesis/dissertation of SIRUI JIANG Candidate for the degree of Doctor of Philosophy* Dr. Shu Chen (Committee Chair) Dr. Xiongwei Zhu Dr. Xinglong Wang Dr. George Dubyak Dr. Charles Hoppel August 15, 2018 *We also certify that written approval has been obtained for any proprietary material contained therein Table of Contents Table of Contents 1 List of Figures 3 Acknowledgements 5 List of Abbreviations 7 Abstract 10 Chapter 1. Introduction 12 Introduction to Alzheimer’s Disease 13 General Information 13 Pathology 14 Pathogenesis 15 Introduction to Mitochondrial Dynamics 20 Mitochondrial Function and Neuronal Health 20 Mitochondrial Dynamics 21 Mitochondrial Dynamics and Mitochondrial Function 23 Mitochondrial Dynamics and Mitochondrial Transport 24 Mitochondrial Deficits in AD 26 Mitochondrial Dysfunction in AD 26 Aβ and Mitochondrial Dysfunction 27 Mitochondrial Dynamic Abnormalities in AD: Recent Advances 28 Conclusion 34 1 Chapter 2. Mfn2 ablation causes an oxidative stress response and eventual neuronal death in the hippocampus and cortex 36 Abstract 37 Background 39 Methods 43 Results 47 Discussion 54 Figures 60 Chapter 3. DLP1 Cleavage by Calpain in Alzheimer’s Disease 71 Abstract 72 Background 73 Methods 77 Results 80 Discussion 85 Figures 89 Chapter 4. Summary, Discussion and Future Directions 96 References 108 2 List of Figures Figure 2.1 Cre-mediated ablation of Mfn2 expression in the hippocampus and cortex of Mfn2 cKO mice 60 Figure 2.2 Quantification of DLP1 and OPA1 in cKO mice 61 Figure 2.3 Mfn2 ablation caused mitochondrial fragmentation and ultrastructural damage in the hippocampus in vivo as evidenced by electron microscopic analysis.
    [Show full text]
  • Expression of DDX11 and DNM1L at the 12P11 Locus Modulates Systemic Lupus Erythematosus Susceptibility
    International Journal of Molecular Sciences Article Expression of DDX11 and DNM1L at the 12p11 Locus Modulates Systemic Lupus Erythematosus Susceptibility Mohammad Saeed 1 , Alejandro Ibáñez-Costa 2 , Alejandra María Patiño-Trives 2, Laura Muñoz-Barrera 2, Eduardo Collantes Estévez 2 , María Ángeles Aguirre 2 and Chary López-Pedrera 2,* 1 ImmunoCure, Karachi 75500, Pakistan; [email protected] 2 Rheumatology Service, Maimonides Institute for Biomedical Research of Cordoba (IMIBIC), Reina Sofia Hospital, University of Cordoba, 14004 Cordoba, Spain; [email protected] (A.I.-C.); [email protected] (A.M.P.-T.); [email protected] (L.M.-B.); [email protected] (E.C.E.); [email protected] (M.Á.A.) * Correspondence: [email protected] Abstract: Objectives: This study employed genetic and functional analyses using OASIS meta- analysis of multiple existing GWAS and gene-expression datasets to identify novel SLE genes. Methods: Four hundred and ten genes were mapped using SNIPPER to 30 SLE GWAS loci and investigated for expression in three SLE GEO-datasets and the Cordoba GSE50395-dataset. Blood eQTL for significant SNPs in SLE loci and STRING for functional pathways of differentially expressed genes were used. Confirmatory qPCR on SLE monocytes was performed. The entire 12p11 locus was investigated for genetic association using two additional GWAS. Expression of 150 genes at Citation: Saeed, M.; Ibáñez-Costa, A.; this locus was assessed. Based on this significance, qPCRs for DNM1L and KRAS were performed. Patiño-Trives, A.M.; Muñoz-Barrera, Results: Fifty genes were differentially expressed in at least two SLE GEO-datasets, with all probes L.; Collantes Estévez, E.; Aguirre, M.Á.; López-Pedrera, C.
    [Show full text]
  • Viral Infection Modulates Mitochondrial Function
    International Journal of Molecular Sciences Review Viral Infection Modulates Mitochondrial Function Xiaowen Li 1,2,3, Keke Wu 1,2,3, Sen Zeng 1,2,3, Feifan Zhao 1,2,3, Jindai Fan 1,2,3, Zhaoyao Li 1,2,3, Lin Yi 1,2,3, Hongxing Ding 1,2,3, Mingqiu Zhao 1,2,3, Shuangqi Fan 1,2,3,* and Jinding Chen 1,2,3,* 1 College of Veterinary Medicine, South China Agricultural University, No. 483 Wushan Road, Tianhe District, Guangzhou 510642, China; [email protected] (X.L.); [email protected] (K.W.); [email protected] (S.Z.); [email protected] (F.Z.); [email protected] (J.F.); [email protected] (Z.L.); [email protected] (L.Y.); [email protected] (H.D.); [email protected] (M.Z.) 2 Guangdong Laboratory for Lingnan Modern Agriculture, College of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China 3 Key Laboratory of Zoonosis Prevention and Control of Guangdong Province, Guangzhou 510642, China * Correspondence: [email protected] (S.F.); [email protected] (J.C.); Tel.: +86-20-8528-8017 (S.F.); +86-20-8528-8017 (J.C.) Abstract: Mitochondria are important organelles involved in metabolism and programmed cell death in eukaryotic cells. In addition, mitochondria are also closely related to the innate immunity of host cells against viruses. The abnormality of mitochondrial morphology and function might lead to a variety of diseases. A large number of studies have found that a variety of viral infec- tions could change mitochondrial dynamics, mediate mitochondria-induced cell death, and alter the mitochondrial metabolic status and cellular innate immune response to maintain intracellular survival.
    [Show full text]