Perception and Representation of Temporally Patterned Odour Stimuli in the Mammalian Olfactory Bulb

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Perception and Representation of Temporally Patterned Odour Stimuli in the Mammalian Olfactory Bulb Perception and representation of temporally patterned odour stimuli in the mammalian olfactory bulb Thesis submitted for the degree of Doctor of Philosophy Andrew Erskine University College London Department of Neuroscience, Physiology and Pharmacology Supervisor Dr. Andreas T. Schaefer Examiners Dr. David Bannerman Dr. Matt Grubb Dedicated to the memories of my Grandparents, Dr. Norman Macleod (1926-2017) and Dr. Marion Macleod (1930-2017), who paved the way. I, Andrew Erskine, confirm that the work presented in this thesis is my own. Where information has been derived from other sources, I confirm that this has been indicated in the thesis. Signed: 5 Contents Abstract 5 I. Introduction 9 1. Anatomy and function of early olfactory structures 13 1.1. Olfactory epithelium . 13 1.1.1. Olfactory sensory neuron physiology . 14 1.2. Olfactory bulb . 16 1.2.1. Feedforward projections to mitral and tufted cells . 16 1.2.2. Mitral and tufted cell physiology . 17 1.2.3. Glomerular layer inhibitory networks . 18 1.2.4. Glomerular layer physiology . 18 1.2.5. External plexiform layer inhibitory networks . 19 1.2.6. External plexiform layer physiology . 19 2. Computation in the early olfactory system 23 2.1. Olfactory discrimination . 23 2.1.1. Discrimination behaviour . 23 2.1.2. Circuit basis of olfactory discrimination . 24 2.1.3. Redundancy of odour coding . 26 2.2. Odour source localisation . 27 2.2.1. Odour source localisation behaviour . 28 2.2.2. Circuit basis of odour source localisation . 28 2.3. Olfactory scene segmentation . 29 2.3.1. Olfactory scene segmentation behaviour . 29 2.3.2. Circuit basis of olfactory scene segmentation . 30 i Contents Contents 3. Temporal dynamics in olfaction 31 3.1. Natural transmission of odours . 31 3.2. Perception of temporal dynamics . 33 3.2.1. Navigation behaviour . 33 3.2.2. Olfactory scene segmentation . 34 3.2.3. Detection and neuronal representation of temporal informa- tion . 35 3.2.4. The early olfactory system in the context of temporally pat- terned odour information . 37 4. Summary and aims 41 II. Methods 43 5. General 45 5.1. Animals . 45 5.2. Odours . 45 5.3. Analysis . 46 6. AutonoMouse 47 6.1. Overview . 47 6.2. Technical Development . 47 6.3. Design overview . 48 6.3.1. Terminology . 49 6.4. Construction . 50 6.4.1. Main structure . 50 6.4.2. Control modules . 50 6.5. Software and experimental control . 52 6.5.1. schedule-generator . 52 6.5.2. autonomouse-control . 53 6.6. Animal preparation . 54 6.7. RFID implant surgery . 54 6.8. Experiment initiation and maintenance . 54 ii Contents 7. Lesion study 57 7.1. Overview . 57 7.2. Task and trial structure . 57 7.2.1. General trial structure . 57 7.2.2. Task structures . 58 7.2.3. Training schedules . 60 7.3. Odour delivery . 61 7.3.1. Control stimuli . 62 7.4. Lesion induction . 63 7.5. MicroCT imaging . 65 7.5.1. MicroCT Lesion Quantification . 65 7.6. Experiment maintenance . 66 8. Odour signal recording 67 8.1. Overview . 67 8.2. Dual-energy photo-ionisation detection . 67 8.2.1. Principle . 67 8.2.2. Decomposition procedure . 68 8.3. Recording apparatus . 69 8.4. Recording conditions . 69 8.4.1. Low energy only . 69 8.4.2. Mixture . 70 8.4.3. Separated . 70 9. Temporal olfactometer 71 9.1. Overview . 71 9.2. Construction . 71 9.3. PulseBoy . 73 10.Correlation discrimination experiment 75 10.1.Overview . 75 10.2.Odour delivery . 75 10.3.Task and trial structure . 75 10.3.1. General structure . 75 10.3.2. Stimulus structure . 76 iii Contents Contents 10.3.3. Task structure . 77 10.3.4. Group structure . 78 10.3.5. Training schedules . 80 11.2-photon imaging 83 11.1.Overview . 83 11.2.Recording procedure . 83 11.3.Stimulus protocol . 84 11.4.Analysis . 85 III. Results 87 12.Aims 89 12.1.Overview . 89 12.2.Automated behavioural training . 89 12.3.Methods for recording natural odour plume data . 90 12.4.Methods for reproducing natural odour plume statistics . 90 13.Automated behaviour as a tool for neuroscience 91 13.1.Overview . 91 13.2.AutonoMouse . 92 13.3.Consistency and reliability of training in AutonoMouse . 93 13.3.1. AutonoMouse gives high volumes of behavioural data . 93 13.3.2. Performance accuracy is stable throughout training . 95 13.3.3. Mice are motivated but not water restricted . 95 13.3.4. Mice maintain a normal level of weight increase . 96 13.4.Summary . 96 14.Investigation of olfactory bulb redundancy with AutonoMouse 105 14.1.Overview . 105 14.2.Quality of learning during olfactory discrimination . 106 14.3.Odour delivery . 107 14.4.Excitotoxic lesioning of the olfactory bulb . 109 14.5.Extreme lesions induce anosmia . 110 iv Contents 14.6.Varying lesion size results in graded performance across olfactory tasks . 111 14.7.Lesion results summary . 112 15.Physical features of temporal dynamics in olfaction 125 15.1.Overview . 125 15.2.Dual energy photo-ionisation detection . 125 15.3.Temporal correlation structure predicts odour source spatial sepa- ration . 128 16.Reproduction of naturally occurring odour signals 133 16.1.Overview . 133 16.2.Olfactometer design . 133 16.3.Olfactometer characterisation . 134 16.3.1. Signal fidelity and pulse frequency . 134 16.3.2. Control of output concentration with pulse width modulation 135 16.3.3. Generation of random concentration step changes . 135 16.3.4. Reproduction of recorded odour plumes . 137 17.Perception of temporal features 141 17.1.Overview . 141 17.2.Stimulus and experiment design . 141 17.2.1. Stimulus production . 141 17.2.2. Counterbalanced group assignment . 143 17.3.Mice learn to discriminate temporal correlations in odour signals . 144 17.3.1. Performance in correlated vs. anti-correlated experiment . 144 17.3.2. Learning occurs regardless of group assignation . 146 17.3.3. Simulated behavioural performance to extraneous sensory cues . 146 17.3.4. Reaction time increases for higher task frequencies . 148 17.3.5. Task accuracy is not based on onset detection . 149 18.Neural representation of temporal features 157 18.1.Overview . 157 18.2.2-photon imaging of projection neurons . 157 v Contents Contents 18.3.Temporally sensitive responses . 159 IV. Discussion 165 19.AutonoMouse 169 19.1.Conclusions and discussion . 169 19.2.Future work . 170 20.Lesion study 173 20.1.Conclusions and discussion . 173 20.2.Future work . 175 21.Perception and representation of odour correlation structure 177 21.1.Temporal olfactometer . 177 21.1.1. Conclusions and discussion . 177 21.2.Dual-energy photoionisation detection . 177 21.2.1. Conclusions and discussion . 177 21.2.2. Future work . ..
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