A Review of the Genus Curtisia (Curtisiaceae)
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Toward a Resolution of Campanulid Phylogeny, with Special Reference to the Placement of Dipsacales
TAXON 57 (1) • February 2008: 53–65 Winkworth & al. • Campanulid phylogeny MOLECULAR PHYLOGENETICS Toward a resolution of Campanulid phylogeny, with special reference to the placement of Dipsacales Richard C. Winkworth1,2, Johannes Lundberg3 & Michael J. Donoghue4 1 Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, Caixa Postal 11461–CEP 05422-970, São Paulo, SP, Brazil. [email protected] (author for correspondence) 2 Current address: School of Biology, Chemistry, and Environmental Sciences, University of the South Pacific, Private Bag, Laucala Campus, Suva, Fiji 3 Department of Phanerogamic Botany, The Swedish Museum of Natural History, Box 50007, 104 05 Stockholm, Sweden 4 Department of Ecology & Evolutionary Biology and Peabody Museum of Natural History, Yale University, P.O. Box 208106, New Haven, Connecticut 06520-8106, U.S.A. Broad-scale phylogenetic analyses of the angiosperms and of the Asteridae have failed to confidently resolve relationships among the major lineages of the campanulid Asteridae (i.e., the euasterid II of APG II, 2003). To address this problem we assembled presently available sequences for a core set of 50 taxa, representing the diver- sity of the four largest lineages (Apiales, Aquifoliales, Asterales, Dipsacales) as well as the smaller “unplaced” groups (e.g., Bruniaceae, Paracryphiaceae, Columelliaceae). We constructed four data matrices for phylogenetic analysis: a chloroplast coding matrix (atpB, matK, ndhF, rbcL), a chloroplast non-coding matrix (rps16 intron, trnT-F region, trnV-atpE IGS), a combined chloroplast dataset (all seven chloroplast regions), and a combined genome matrix (seven chloroplast regions plus 18S and 26S rDNA). Bayesian analyses of these datasets using mixed substitution models produced often well-resolved and supported trees. -
Flowering Plants Eudicots Apiales, Gentianales (Except Rubiaceae)
Edited by K. Kubitzki Volume XV Flowering Plants Eudicots Apiales, Gentianales (except Rubiaceae) Joachim W. Kadereit · Volker Bittrich (Eds.) THE FAMILIES AND GENERA OF VASCULAR PLANTS Edited by K. Kubitzki For further volumes see list at the end of the book and: http://www.springer.com/series/1306 The Families and Genera of Vascular Plants Edited by K. Kubitzki Flowering Plants Á Eudicots XV Apiales, Gentianales (except Rubiaceae) Volume Editors: Joachim W. Kadereit • Volker Bittrich With 85 Figures Editors Joachim W. Kadereit Volker Bittrich Johannes Gutenberg Campinas Universita¨t Mainz Brazil Mainz Germany Series Editor Prof. Dr. Klaus Kubitzki Universita¨t Hamburg Biozentrum Klein-Flottbek und Botanischer Garten 22609 Hamburg Germany The Families and Genera of Vascular Plants ISBN 978-3-319-93604-8 ISBN 978-3-319-93605-5 (eBook) https://doi.org/10.1007/978-3-319-93605-5 Library of Congress Control Number: 2018961008 # Springer International Publishing AG, part of Springer Nature 2018 This work is subject to copyright. All rights are reserved by the Publisher, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed. The use of general descriptive names, registered names, trademarks, service marks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. -
Research Article
Research Article: Maximum Likelihood Analyses of 3,490 rbcL Sequences: Scalability of Comprehensive Inference versus Group-Specific Taxon Sampling Alexandros Stamatakis1,*, Markus Göker2,3, Guido Grimm4 1 The Exelixis Lab, Dept. of Computer Science, Technische Universität München, Germany 2 Organismic Botany, Eberhard-Karls-University, Tübingen, Germany 3 German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany 4 Department of Palaeobotany, Swedish Museum of Natural History, Stockholm, Sweden * Corresponding author: Technische Universität München, Fakultät für Informatik, I 12, Boltzmannstr. 3, 85748 Garching b. München, Tel: +49 89 28919434, Fax: +49 89 28919414, Email: [email protected] Keywords: Phylogenetic Inference, Maximum Likelihood, RAxML, large single–gene datasets, eudicots Running head: Scalability of Maximum Likelihood Analyses Abbreviations: GRTS: Group-based Randomized Taxon-Subsampling; TU: Taxonomic Unit. Abstract The constant accumulation of sequence data poses new computational and methodological challenges for phylogenetic inference, since multiple sequence alignments grow both in the horizontal (number of base pairs, phylogenomic alignments) as well as vertical (number of taxa) dimension. Put aside the ongoing controversial discussion about appropriate models, partitioning schemes, and assembly methods for phylogenomic alignments, coupled with the high computational cost to infer these, for many organismic groups, a sufficient number of taxa is often exclusively available from one or just a few genes (e.g., rbcL, matK, rDNA). In this paper we address scalability of Maximum-Likelihood-based phylogeny reconstruction with respect to the number of taxa by example of several large nested single-gene rbcL alignments comprising 400 up to 3,491 taxa. In order to thoroughly test the effect of taxon sampling, we deploy an appropriately adapted taxon jackknifing approach. -
Dry Forest Trees of Madagascar
The Red List of Dry Forest Trees of Madagascar Emily Beech, Malin Rivers, Sylvie Andriambololonera, Faranirina Lantoarisoa, Helene Ralimanana, Solofo Rakotoarisoa, Aro Vonjy Ramarosandratana, Megan Barstow, Katharine Davies, Ryan Hills, Kate Marfleet & Vololoniaina Jeannoda Published by Botanic Gardens Conservation International Descanso House, 199 Kew Road, Richmond, Surrey, TW9 3BW, UK. © 2020 Botanic Gardens Conservation International ISBN-10: 978-1-905164-75-2 ISBN-13: 978-1-905164-75-2 Reproduction of any part of the publication for educational, conservation and other non-profit purposes is authorized without prior permission from the copyright holder, provided that the source is fully acknowledged. Reproduction for resale or other commercial purposes is prohibited without prior written permission from the copyright holder. Recommended citation: Beech, E., Rivers, M., Andriambololonera, S., Lantoarisoa, F., Ralimanana, H., Rakotoarisoa, S., Ramarosandratana, A.V., Barstow, M., Davies, K., Hills, BOTANIC GARDENS CONSERVATION INTERNATIONAL (BGCI) R., Marfleet, K. and Jeannoda, V. (2020). Red List of is the world’s largest plant conservation network, comprising more than Dry Forest Trees of Madagascar. BGCI. Richmond, UK. 500 botanic gardens in over 100 countries, and provides the secretariat to AUTHORS the IUCN/SSC Global Tree Specialist Group. BGCI was established in 1987 Sylvie Andriambololonera and and is a registered charity with offices in the UK, US, China and Kenya. Faranirina Lantoarisoa: Missouri Botanical Garden Madagascar Program Helene Ralimanana and Solofo Rakotoarisoa: Kew Madagascar Conservation Centre Aro Vonjy Ramarosandratana: University of Antananarivo (Plant Biology and Ecology Department) THE IUCN/SSC GLOBAL TREE SPECIALIST GROUP (GTSG) forms part of the Species Survival Commission’s network of over 7,000 Emily Beech, Megan Barstow, Katharine Davies, Ryan Hills, Kate Marfleet and Malin Rivers: BGCI volunteers working to stop the loss of plants, animals and their habitats. -
From the Late Eocene of Hordle, Southern England
Acta Palaeobotanica 59(1): 51–67, 2019 e-ISSN 2082-0259 DOI: 10.2478/acpa-2019-0006 ISSN 0001-6594 Fruit morphology, anatomy and relationships of the type species of Mastixicarpum and Eomastixia (Cornales) from the late Eocene of Hordle, southern England STEVEN R. MANCHESTER1* and MARGARET E. COLLINSON2 1 Florida Museum of Natural History, Dickinson Hall, P.O. Box 117800, Gainesville, Florida, U.S.A.; e-mail: [email protected] 2 Department of Earth Sciences, Royal Holloway University of London, Egham, Surrey TW20 0EX, United Kingdom Received 26 October 2018; accepted for publication 29 April 2019 ABSTRACT. The Mastixiaceae (Cornales) were more widespread and diverse in the Cenozoic than they are today. The fossil record includes fruits of both extant genera, Mastixia and Diplopanax, as well as several extinct genera. Two of the fossil genera, Eomastixia and Mastixicarpum, are prominent in the palaeobotanical literature, but concepts of their delimitation have varied with different authors. These genera, both based on species described 93 years ago by Marjorie Chandler from the late Eocene (Priabonian) Totland Bay Member of the Headon Hill Formation at Hordle, England, are nomenclaturally fundamental, because they were the first of a series of fos- sil mastixioid genera published from the European Cenozoic. In order to better understand the type species of Eomastixia and Mastixicarpum, we studied type specimens and topotypic material using x-ray tomography and scanning electron microscopy to supplement traditional methods of analysis, to improve our understanding of the morphology and anatomy of these fossils. Following comparisons with other fossil and modern taxa, we retain Mas- tixicarpum crassum Chandler rather than transferring it to the similar extant genus Diplopanax, and we retain Eomastixia bilocularis Chandler [=Eomastixia rugosa (Zenker) Chandler] and corroborate earlier conclusions that this species represents an extinct genus that is more closely related to Mastixia than to Diplopanax. -
Phytogeographic Review of Vietnam and Adjacent Areas of Eastern Indochina L
KOMAROVIA (2003) 3: 1–83 Saint Petersburg Phytogeographic review of Vietnam and adjacent areas of Eastern Indochina L. V. Averyanov, Phan Ke Loc, Nguyen Tien Hiep, D. K. Harder Leonid V. Averyanov, Herbarium, Komarov Botanical Institute of the Russian Academy of Sciences, Prof. Popov str. 2, Saint Petersburg 197376, Russia E-mail: [email protected], [email protected] Phan Ke Loc, Department of Botany, Viet Nam National University, Hanoi, Viet Nam. E-mail: [email protected] Nguyen Tien Hiep, Institute of Ecology and Biological Resources of the National Centre for Natural Sciences and Technology of Viet Nam, Nghia Do, Cau Giay, Hanoi, Viet Nam. E-mail: [email protected] Dan K. Harder, Arboretum, University of California Santa Cruz, 1156 High Street, Santa Cruz, California 95064, U.S.A. E-mail: [email protected] The main phytogeographic regions within the eastern part of the Indochinese Peninsula are delimited on the basis of analysis of recent literature on geology, geomorphology and climatology of the region, as well as numerous recent literature information on phytogeography, flora and vegetation. The following six phytogeographic regions (at the rank of floristic province) are distinguished and outlined within eastern Indochina: Sikang-Yunnan Province, South Chinese Province, North Indochinese Province, Central Annamese Province, South Annamese Province and South Indochinese Province. Short descriptions of these floristic units are given along with analysis of their floristic relationships. Special floristic analysis and consideration are given to the Orchidaceae as the largest well-studied representative of the Indochinese flora. 1. Background The Socialist Republic of Vietnam, comprising the largest area in the eastern part of the Indochinese Peninsula, is situated along the southeastern margin of the Peninsula. -
Systematics, Climate, and Ecology of Fossil and Extant Nyssa (Nyssaceae, Cornales) and Implications of Nyssa Grayensis Sp
East Tennessee State University Digital Commons @ East Tennessee State University Electronic Theses and Dissertations Student Works 8-2013 Systematics, Climate, and Ecology of Fossil and Extant Nyssa (Nyssaceae, Cornales) and Implications of Nyssa grayensis sp. nov. from the Gray Fossil Site, Northeast Tennessee Nathan R. Noll East Tennessee State University Follow this and additional works at: https://dc.etsu.edu/etd Part of the Biodiversity Commons, Climate Commons, Paleontology Commons, and the Plant Biology Commons Recommended Citation Noll, Nathan R., "Systematics, Climate, and Ecology of Fossil and Extant Nyssa (Nyssaceae, Cornales) and Implications of Nyssa grayensis sp. nov. from the Gray Fossil Site, Northeast Tennessee" (2013). Electronic Theses and Dissertations. Paper 1204. https://dc.etsu.edu/etd/1204 This Thesis - Open Access is brought to you for free and open access by the Student Works at Digital Commons @ East Tennessee State University. It has been accepted for inclusion in Electronic Theses and Dissertations by an authorized administrator of Digital Commons @ East Tennessee State University. For more information, please contact [email protected]. Systematics, Climate, and Ecology of Fossil and Extant Nyssa (Nyssaceae, Cornales) and Implications of Nyssa grayensis sp. nov. from the Gray Fossil Site, Northeast Tennessee ___________________________ A thesis presented to the faculty of the Department of Biological Sciences East Tennessee State University In partial fulfillment of the requirements for the degree Master of Science in Biology ___________________________ by Nathan R. Noll August 2013 ___________________________ Dr. Yu-Sheng (Christopher) Liu, Chair Dr. Tim McDowell Dr. Foster Levy Keywords: Nyssa, Endocarp, Gray Fossil Site, Miocene, Pliocene, Karst ABSTRACT Systematics, Climate, and Ecology of Fossil and Extant Nyssa (Nyssaceae, Cornales) and Implications of Nyssa grayensis sp. -
Report of Rapid Biodiversity Assessments at Cenwanglaoshan Nature Reserve, Northwest Guangxi, China, 1999 and 2002
Report of Rapid Biodiversity Assessments at Cenwanglaoshan Nature Reserve, Northwest Guangxi, China, 1999 and 2002 Kadoorie Farm and Botanic Garden in collaboration with Guangxi Zhuang Autonomous Region Forestry Department Guangxi Forestry Survey and Planning Institute South China Institute of Botany South China Normal University Institute of Zoology, CAS March 2003 South China Forest Biodiversity Survey Report Series: No. 27 (Online Simplified Version) Report of Rapid Biodiversity Assessments at Cenwanglaoshan Nature Reserve, Northwest Guangxi, China, 1999 and 2002 Editors John R. Fellowes, Bosco P.L. Chan, Michael W.N. Lau, Ng Sai-Chit and Gloria L.P. Siu Contributors Kadoorie Farm and Botanic Garden: Gloria L.P. Siu (GS) Bosco P.L. Chan (BC) John R. Fellowes (JRF) Michael W.N. Lau (ML) Lee Kwok Shing (LKS) Ng Sai-Chit (NSC) Graham T. Reels (GTR) Roger C. Kendrick (RCK) Guangxi Zhuang Autonomous Region Forestry Department: Xu Zhihong (XZH) Pun Fulin (PFL) Xiao Ma (XM) Zhu Jindao (ZJD) Guangxi Forestry Survey and Planning Institute (Comprehensive Tan Wei Fu (TWF) Planning Branch): Huang Ziping (HZP) Guangxi Natural History Museum: Mo Yunming (MYM) Zhou Tianfu (ZTF) South China Institute of Botany: Chen Binghui (CBH) Huang Xiangxu (HXX) Wang Ruijiang (WRJ) South China Normal University: Li Zhenchang (LZC) Chen Xianglin (CXL) Institute of Zoology CAS (Beijing): Zhang Guoqing (ZGQ) Chen Deniu (CDN) Nanjing University: Chen Jianshou (CJS) Wang Songjie (WSJ) Xinyang Teachers’ College: Li Hongjing (LHJ) Voluntary specialist: Keith D.P. Wilson (KW) Background The present report details the findings of visits to Northwest Guangxi by members of Kadoorie Farm and Botanic Garden (KFBG) in Hong Kong and their colleagues, as part of KFBG's South China Biodiversity Conservation Programme. -
Solanales Nymphaeales Austrobaileyales
Amborellales Solanales Nymphaeales Austrobaileyales Acorales G Eenzaadlobbigen G Alismatales Solanales Petrosaviales Pandanales Van de Lamiiden (Garryales, Ge Dioscoreales Lamiales) is op basis van molecu Liliales morfologische kenmerken zeke Asparagales afstammelingen van één voorou Arecales Solanales is dat nog niet zeker, G Commeliniden G Dasypogonales verwantschappen tussen de fam Poales Commelinales In de samenstelling van de Sola Zingiberales ander veranderd. De Watergent (Menyanthaceae) is verplaatst n Ceratophyllales Vlambloemfamilie (Polemoniace Chloranthales de Bosliefjesfamilie (Hydrophyll Ruwbladigenfamilie (Boraginac Canellales Piperales de Montiniaceae uit de Ribesfam G Magnoliiden G Magnoliales Saxifragales), de Hydroleaceae u Laurales (was Boraginaceae), en de Sphe Ranunculales Klokjesfamilie (Campanulaceae, Sabiales Solanales hebben meestal versp Proteales bladeren zonder steunblaadjes. Trochodendrales Buxales regelmatig, met een vergroeidb en evenveel meeldraden als kro Gunnerales op de vrucht zitten. Iridoiden ko Berberidopsidales Dilleniales voor, maar wel allerlei alkaloide Caryophyllales Santalales Solanales Saxifragales Lamiids (Garryales, Gentianales, Sol G Geavanceerde tweezaadlobbigen G Vitales supposed to be monophyletic becau Crossosomatales anatomical, and morphological cha Geraniales of the order Solanales, and relation Myrtales are not yet clear. However, some ch in the composition of this order. Me Zygophyllales Celastrales moved to Asterales, Polemoniaceae Malpighiales Hydrophyllaceae to Boraginaceae. -
Characterization of Compounds from Curtisia Dentata (Cornaceae) Active Against Candida Albicans
CHARACTERIZATION OF COMPOUNDS FROM CURTISIA DENTATA (CORNACEAE) ACTIVE AGAINST CANDIDA ALBICANS LESHWENI JEREMIA SHAI THESIS SUBMITTED TO THE DEAPRTMENT OF PARACLINICAL SCIENCES, FACULTY OF VETERINARY SCIENCES, UNIVERSITY OF PRETORIA, FOR THE FULFILMENT OF THE DEGREE DOCTOR OF PHILOSOPHY SUPERVISOR: DR. LYNDY J. MCGAW (PhD) CO-SUPERVISOR: PROF. JACOBUS N. ELOFF (PhD) OCTOBER 2007 DECLARATION I declare that the thesis hereby submitted to the University of Pretoria for the degree Philosophiae Doctor has not previously been submitted by me for a degree at this or any other university, that it is my own work in design and in execution, and that all material contained herein has been duly acknowledged. Mr. L.J. Shai Prof. J.N. Eloff (Promoter) Dr. L.J. McGaw (Co-promoter) i ACKNOWLEDGEMENTS ‘Moreko ga itekole, ebile motho ke motho ka bangwe batho (Sepedi proverb). In short, no man is an island’. THIS PROJECT IS DEDICATED TO MY FAMILY (My wife Grace, my daughters Pontsho and Bonnie, I love you. This is for you). I want to thank the following: 1. GOD ALMIGHTY for love and life he has shown throughout my life. Without HIS plants, HIS chemicals, HIS gift of love and HIS gift of life this work would not have been a reality. 2. Dr. L.J. McGaw (I called you Lyndy), for the expert supervision and guidance throughout the project. Your understanding and most importantly, your friendship enabled successful completion of this research project. 3. Prof. J.N. Eloff for expertise and knowledge in Phytochemistry and Biochemistry without which this work would not have been possible. -
A Molecular Phylogeny of the Solanaceae
TAXON 57 (4) • November 2008: 1159–1181 Olmstead & al. • Molecular phylogeny of Solanaceae MOLECULAR PHYLOGENETICS A molecular phylogeny of the Solanaceae Richard G. Olmstead1*, Lynn Bohs2, Hala Abdel Migid1,3, Eugenio Santiago-Valentin1,4, Vicente F. Garcia1,5 & Sarah M. Collier1,6 1 Department of Biology, University of Washington, Seattle, Washington 98195, U.S.A. *olmstead@ u.washington.edu (author for correspondence) 2 Department of Biology, University of Utah, Salt Lake City, Utah 84112, U.S.A. 3 Present address: Botany Department, Faculty of Science, Mansoura University, Mansoura, Egypt 4 Present address: Jardin Botanico de Puerto Rico, Universidad de Puerto Rico, Apartado Postal 364984, San Juan 00936, Puerto Rico 5 Present address: Department of Integrative Biology, 3060 Valley Life Sciences Building, University of California, Berkeley, California 94720, U.S.A. 6 Present address: Department of Plant Breeding and Genetics, Cornell University, Ithaca, New York 14853, U.S.A. A phylogeny of Solanaceae is presented based on the chloroplast DNA regions ndhF and trnLF. With 89 genera and 190 species included, this represents a nearly comprehensive genus-level sampling and provides a framework phylogeny for the entire family that helps integrate many previously-published phylogenetic studies within So- lanaceae. The four genera comprising the family Goetzeaceae and the monotypic families Duckeodendraceae, Nolanaceae, and Sclerophylaceae, often recognized in traditional classifications, are shown to be included in Solanaceae. The current results corroborate previous studies that identify a monophyletic subfamily Solanoideae and the more inclusive “x = 12” clade, which includes Nicotiana and the Australian tribe Anthocercideae. These results also provide greater resolution among lineages within Solanoideae, confirming Jaltomata as sister to Solanum and identifying a clade comprised primarily of tribes Capsiceae (Capsicum and Lycianthes) and Physaleae. -
Curriculum Vitae
Updated July 15, 2021 Curriculum Vitae GREGORY M. PLUNKETT ADDRESS: New York Botanical Garden Phone: (718) 817-8179 2900 Southern Blvd. FAX: (718) 817-8101 Bronx, NY 10458-5126 e-mail: [email protected] BIRTH DATE: February 21, 1965. Bayonne, New Jersey, USA EDUCATION: Ph.D. (Botany), Washington State University (D.E. Soltis, advisor). 1994. M.A. (Biology), The College of William and Mary in Virginia (G.W. Hall, advisor). 1990. B.S. (Biology), The College of William and Mary in Virginia. 1987. CURRENT POSITION: Director & Curator, Program for Molecular Systematics, New York Botanical Garden. PAST FACULTY POSITIONS Professor of Biology, Virginia Commonwealth University. 2008–2009. Associate Professor of Biology, Virginia Commonwealth University. 2002–2008. Assistant Professor of Biology, Virginia Commonwealth University. 1996–2002. CURRENT AFFILIATED POSITIONS: Affiliate Professor of Biology, Virginia Commonwealth University. 2009–present. Adjunct Professor of Plant Sciences, The Graduate Center, City University of New York. 2009–present. Adjunct Faculty, Fordham University. 2014–present. Research Associate, Missouri Botanical Garden, St. Louis. 2002–present. OTHER PROFESSIONAL EXPERIENCE: Curator, Herbarium of Virginia Commonwealth University (VCU). 1996–2009. Graduate Faculty, Molecular Biology and Genetics Program, VCU. 1998–2009. Fellow, Center for the Study of Biological Complexity, VCU. 2002–2009. Visiting Curator/Professeur, Muséum National d’Histoire Naturelle, Paris. 2004, 2005. Visiting Scientist, University of the South Pacific,