Amphibia, Anura, Arthroleptidae)
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Sequencing of Mitochondrial DNA with Long Repetitive Regions and Detection of the Frog Lineages of Large Mt Genome Showing Reduction of Purifying Selection
Prime Archives in Genetics: 2nd Edition Book Chapter Sequencing of Mitochondrial DNA with Long Repetitive Regions and Detection of the Frog Lineages of Large mt Genome Showing Reduction of Purifying Selection Ryosuke Kakehashi1, Keitaro Hemmi2, Chiaki Kambayashi1 and Atsushi Kurabayashi1* 1Faculty of Bio-Science, Nagahama Institute of Bio-Science and Technology, Japan 2Amphibian Research Center, Hiroshima University, Japan *Corresponding Author: Atsushi Kurabayashi, Faculty of Bio- Science, Nagahama Institute of Bio-Science and Technology, Japan Published July 12, 2021 This Book Chapter is a republication of an article published by Atsushi Kurabayashi, et al. at International Journal of Genomics in January 2020. (Keitaro Hemmi, Ryosuke Kakehashi, Chiaki Kambayashi, Louis Du Preez, Leslie Minter, Nobuaki Furuno, Atsushi Kurabayashi. Exceptional Enlargement of the Mitochondrial Genome Results from Distinct Causes in Different Rain Frogs (Anura: Brevicipitidae: Breviceps). International Journal of Genomics. Volume 2020, Article ID 6540343, 12 pages. https://doi.org/10.1155/2020/6540343) How to cite this book chapter: Ryosuke Kakehashi, Keitaro Hemmi, Chiaki Kambayashi, Atsushi Kurabayashi. Sequencing of Mitochondrial DNA with Long Repetitive Regions and Detection of the Frog Lineages of Large mt Genome Showing Reduction of Purifying Selection. In: Fekadu Gadissa, editor. Prime Archives in Genetics: 2nd Edition. Hyderabad, India: Vide Leaf. 2021. 1 www.videleaf.com Prime Archives in Genetics: 2nd Edition © The Author(s) 2021. This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract The mitochondrial (mt) genome of the bushveld rain frog (Breviceps adspersus, family Brevicipitidae, Afrobatrachia) is the largest (28.8 kbp) among the vertebrates investigated to date. -
What Is Driving Declines of Montane Endemic Amphibians? New Insights from Mount Bamboutos, Cameroon
What is driving declines of montane endemic amphibians? New insights from Mount Bamboutos, Cameroon A. M. TCHASSEM F., T. M. DOHERTY-B ONE,M.M.KAMENI N. W. P. TAPONDJOU N.,J.L.TAMESSE and L . N . G ONWOUO Abstract Amphibians on African mountains are threatened Preserving a network of connected forest patches is there- by habitat loss and fragmentation, pollution, disease and fore critical to save the endemic amphibians of Mount climate change. In particular, there have been recent reports Bamboutos. of declines of montane endemic frogs in Cameroon. Mount Keywords Africa, amphibians, anurans, Cameroon, caeci- Bamboutos, although home to numerous species of endemic lians, endemic species, forest degradation, mountains amphibians, has no official protection and its amphibian populations have so far not been studied quantitatively. Supplementary material for this article is available at We surveyed frog assemblages on this mountain along a https://doi.org/./S gradient of forest modification over a -year period. Through visual encounter surveys stratified across forest and farm- land, we found that threatened montane amphibian species Introduction are closely associated with forested areas, particularly the Critically Endangered Leptodactylodon axillaris and mphibians are threatened globally, with over one-third Endangered Leptodactylodon perreti, Astylosternus ranoides Aof all known species at risk of extinction and half show- and Cardioglossa oreas. Using the updated inventory of ing population declines (Stuart et al., ; IUCN, ). amphibians, which includes species with broader ranges Threats include habitat alteration, loss and fragmenta- across Africa, we found % of amphibian species on tion, pollution, overexploitation, disease, invasive species, Mount Bamboutos to be threatened. We did not record climate change and combinations of these factors (Beebee several species present in historical records, which suggests & Griffiths, ). -
Amphibians and Reptiles of a Proposed Iron Ore Mining Concession in Southern Cameroon
Herpetology Notes, volume 14: 1051-1065 (2021) (published online on 09 August 2021) Amphibians and reptiles of a proposed iron ore mining concession in southern Cameroon Nono L. Gonwouo1,*, Arnaud M.F. Tchassem1, Thomas M. Doherty-Bone2,3, and Mark-Oliver Rödel4 Abstract. We present a checklist of amphibian and reptile species that occur in the Ntem Iron ore mining concession in southern Cameroon, compiled as part of a broader biodiversity impact survey during a two-week herpetofaunal survey. Visual and acoustic encounter surveys were carried out during day and night, covering the entire area of mining exploration. We document the presence of 38 amphibian and 28 reptile species. The most notable observation was a 150-km southward range extension of Didynamipus sjostedti. Other species of conservation concern include Conraua goliath, Leptodactylodon albiventris, L. ventrimarmoratus, Osteolaemus tetraspis, Varanus niloticus, and Kinixys erosa. These and numerous other forest-dwelling species indicate the intact nature of herpetofauna forest assemblages at the study sites. Efforts to conserve the herpetofauna at these sites should focus on protecting and monitoring the intact forest corridors linking the concession to a neighbouring forest reserve, as well as plans for restoration once extraction is completed. Keywords. Species richness, habitat, fragmentation, management, rainforest Introduction influenced by microclimate, such as temperature and humidity, as well as by the presence of microhabitats (e.g., Anthropogenic habitat change is a major factor driving forest leaf litter; Wake, 1991; Blaustein et al., 1994; Ernst species and population declines (Stuart et al., 2004; et al., 2006), making them vulnerable to forest alteration Reading et al., 2010; Böhm et al., 2013; Pimm et al., and clearance (Ernst and Rödel, 2005; Ernst et al., 2006; 2014), and it has been identified as a primary threat to Barrett and Guyer, 2008). -
Folding Frog Afrixalus Paradorsalis (Anura: Hyperoliidae) of the Lower Guineo-Congolian Rain Forest
DOI: 10.1111/jbi.13365 RESEARCH PAPER Sky, sea, and forest islands: Diversification in the African leaf-folding frog Afrixalus paradorsalis (Anura: Hyperoliidae) of the Lower Guineo-Congolian rain forest Kristin L. Charles1 | Rayna C. Bell2,3 | David C. Blackburn4 | Marius Burger5,6 | Matthew K. Fujita7 | Vaclav Gvozdık8,9 | Gregory F.M. Jongsma4 | Marcel Talla Kouete4 | Adam D. Leache10,11 | Daniel M. Portik7,12 1Department of Biology, University of Nevada, Reno, Nevada 2Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, District of Columbia 3Museum of Vertebrate Zoology, University of California, Berkeley, California 4Florida Museum of Natural History, University of Florida, Gainesville, Florida 5African Amphibian Conservation Research Group, Unit for Environmental Sciences and Management, North-West University, Potchefstroom,South Africa 6Flora Fauna & Man, Ecological Services Ltd., Tortola, British Virgin Island 7Department of Biology, The University of Texas at Arlington, Arlington, Texas 8Institute of Vertebrate Biology, Czech Academy of Sciences, Brno,Czech Republic 9Department of Zoology, National Museum, Prague, Czech Republic 10Department of Biology, University of Washington, Seattle, Washington 11Burke Museum of Natural History and Culture, University of Washington, Seattle, Washington 12Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, Arizona Correspondence Daniel M. Portik, Department of Ecology Abstract and Evolutionary Biology, University of Aim: To investigate how putative barriers, forest refugia, and ecological gradients Arizona, Tucson, AZ. Email: [email protected] across the lower Guineo-Congolian rain forest shape genetic and phenotypic diver- gence in the leaf-folding frog Afrixalus paradorsalis, and examine the role of adjacent Funding information Division of Environmental Biology, Grant/ land bridge and sky-islands in diversification. -
Research Article EMERGING CHYTRID FUNGAL PATHOGEN, BATRACHOCHYTRIUM DENDROBATIDIS, in ZOO AMPHIBIANS in THAILAND
Acta Veterinaria-Beograd 2017, 67 (4), 525-539 UDK: 597.6:069.029(593); 597.6-12:616.992(593) DOI:10.1515/acve-2017-0042 Research article EMERGING CHYTRID FUNGAL PATHOGEN, BATRACHOCHYTRIUM DENDROBATIDIS, IN ZOO AMPHIBIANS IN THAILAND TECHANGAMSUWAN Somporn1,2,a, SOMMANUSTWEECHAI Angkana3,a, KAMOLNORRANART Sumate3, SIRIAROONRAT Boripat3, KHONSUE Wichase4, PIRARAT Nopadon1* 1STAR Wildlife, Exotic and Aquatic Pathology, Department of Pathology, Faculty of Veterinary Science, Chulalongkorn University, Bangkok 10330 Thailand; 2STAR Diagnosis and Monitoring of Animal Pathogen (DMAP), Faculty of Veterinary Science, Chulalongkorn University, Bangkok 10330 Thailand; 3Conservation Research and Education Division, Zoological Park Organization of Thailand, Dusit, Bangkok 10300 Thailand; 4Department of Biology, Faculty of Science, Chulalongkorn University, Bangkok 10330 Thailand; $Both fi rst authors distributed equally (Received 03 February, Accepted 28 June 2017) Chytridiomycosis, a disease in amphibians caused by Batrachochytrium dendrobatidis (Bd), has led to a population decline and extinction of frog species since 1996. The objective of this study was to determine the prevalence of and the need for establishing a surveillance system for monitoring chytridiomycosis in fi ve national zoos and fi ve free ranging protected areas across Thailand. A total of 492 skin swab samples were collected from live and dead animals and tested by polymerase chain reaction (PCR) for the presence of Bd. The positive specimens were confi rmed by amplicon sequencing and examined by histopathology and immunohistochemistry. From July 2009 to August 2012, the prevalence of Bd from frog skin samples was low (4.27%), monitored by PCR. All samples from live amphibians were negative. The positive cases were only from dead specimens (21/168, 12.5% dead samples) of two non-native captive species, poison dart frog (Dendrobates tinctorius) and tomato frog (Dyscophus antongilii) in one zoo. -
Miocene Plio-Pleistocene Oligocene Eocene Paleocene Cretaceous
Phrynomantis microps Hemisus sudanensis Hemisus marmoratus Balebreviceps hillmani Breviceps mossambicus Breviceps adspersus Breviceps montanus Breviceps fuscus Breviceps gibbosus Breviceps macrops Breviceps namaquensis Breviceps branchi Spelaeophryne methneri Probreviceps loveridgei Probreviceps uluguruensis Probreviceps durirostris Probreviceps sp. Nguru Probreviceps sp. Rubeho Probreviceps sp. Kigogo Probreviceps sp. Udzungwa Probreviceps rungwensis Probreviceps macrodactylus Callulina shengena Callulina laphami Callulina dawida Callulina kanga Callulina sp lowland Callulina sp Rubeho Callulina hanseni Callulina meteora Callulina stanleyi Callulina kisiwamsitu Callulina kreffti Nyctibates corrugatus Scotobleps gabonicus Astylosternus laticephalus Astylosternus occidentalis Trichobatrachus robustus Astylosternus diadematus Astylosternus schioetzi Astylosternus batesi Leptodactylodon mertensi Leptodactylodon erythrogaster Leptodactylodon perreti Leptodactylodon axillaris Leptodactylodon polyacanthus Leptodactylodon bicolor Leptodactylodon bueanus Leptodactylodon ornatus Leptodactylodon boulengeri Leptodactylodon ventrimarmoratus Leptodactylodon ovatus Leptopelis parkeri Leptopelis macrotis Leptopelis millsoni Leptopelis rufus Leptopelis argenteus Leptopelis yaldeni Leptopelis vannutellii Leptopelis susanae Leptopelis gramineus Leptopelis kivuensis Leptopelis ocellatus Leptopelis spiritusnoctis Leptopelis viridis Leptopelis aubryi Leptopelis natalensis Leptopelis palmatus Leptopelis calcaratus Leptopelis brevirostris Leptopelis notatus -
2019 Journal Publications
2019 Journal Publications January Ayala, C. Ramos, A. Merlo, Á. Zambrano, L. (2019). Microhabitat selection of axolotls, Ambystoma mexicanum , in artificial and natural aquatic systems. Hydrobiologia, 828(1), pp.11-20. https://link.springer.com/article/10.1007/s10750-018-3792-8 Bélouard, N. Petit, E. J. Huteau, D. Oger, A. Paillisson, J-M. (2019). Fins are relevant non-lethal surrogates for muscle to measure stable isotopes in amphibians. Knowledge & Management of Aquatic Ecosystems, 420. https://www.kmae-journal.org/articles/kmae/pdf/2019/01/kmae180087.pdf Bignotte-Giró, I. Fong G, A. López-Iborra, G. M. (2019). Acoustic niche partitioning in five Cuban frogs of the genus Eleutherodactylus. Amphibia Reptilia,(40)1. https://brill.com/abstract/journals/amre/40/1/article-p1_1.xml Boissinot, A. Besnard, A. Lourdais, O. (2019). Amphibian diversity in farmlands: Combined influences of breeding-site and landscape attributes in western France. Agriculture, Ecosystems & Environment 269, pp.51-61. https://www.sciencedirect.com/science/article/pii/S0167880918303979 Borges, R. E. de Souza Santos, L. R. Assis, R. A. Benvindo-Souza, M. (2019). Monitoring the morphological integrity of neotropical anurans. Environmental Science and Pollution Research, 26(3), pp. 2623–2634. https://link.springer.com/article/10.1007/s11356-018-3779-z Borteiro, C. Kolenc, F. Verdes, J. M. Debat, C. M. Ubilla, M. (2019). Sensitivity of histology for the detection of the amphibian chytrid fungus Batrachochytrium dendrobatidis. Journal of Veterinary Diagnostic Investigation, 01/19/2019, p.104063871881611 https://journals.sagepub.com/doi/abs/10.1177/1040638718816116 Bozzuto, C. Canessa, S. (2019). Impact of seasonal cycles on host-pathogen dynamics and disease mitigation for Batrachochytrium salamandrivorans. -
Arthroleptis) and Long-fingered Frogs (Cardioglossa) Estimated from Mitochondrial Data
Molecular Phylogenetics and Evolution 49 (2008) 806–826 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Biogeography and evolution of body size and life history of African frogs: Phylogeny of squeakers (Arthroleptis) and long-fingered frogs (Cardioglossa) estimated from mitochondrial data David C. Blackburn 1 Museum of Comparative Zoology, Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA article info abstract Article history: The evolutionary history of living African amphibians remains poorly understood. This study estimates Received 7 March 2008 the phylogeny within the frog genera Arthroleptis and Cardioglossa using approximately 2400 bases of Revised 11 August 2008 mtDNA sequence data (12S, tRNA-Valine, and 16S genes) from half of the described species. Analyses Accepted 14 August 2008 are conducted using parsimony, maximum likelihood, and Bayesian methods. The effect of alignment Available online 30 August 2008 on phylogeny estimation is explored by separately analyzing alignments generated with different gap costs and a consensus alignment. The consensus alignment results in species paraphyly, low nodal sup- Keywords: port, and incongruence with the results based on other alignments, which produced largely similar Ancestral state reconstruction results. Most nodes in the phylogeny are highly supported, yet several topologies are inconsistent with Arthroleptidae Character evolution previous hypotheses. The monophyly of Cardioglossa and of miniature species previously assigned to Cryptic species Schoutedenella was further examined using Templeton and Shimodaira–Hasegawa tests. Cardioglossa Direct development monophyly is rejected and C. aureoli is transferred to Arthroleptis. These tests do not reject Schoutedenella Miniaturization monophyly, but this hypothesis receives no support from non-parametric bootstrapping or Bayesian pos- Schoutedenella terior probabilities. -
Systematics of Leptopelis (Anura: Arthroleptidae) from the Itombwe
University of Texas at El Paso DigitalCommons@UTEP Open Access Theses & Dissertations 2012-01-01 Systematics of Leptopelis (Anura: Arthroleptidae) from the Itombwe Plateau, Eastern Democratic Republic of the Congo Francisco Portillo University of Texas at El Paso, [email protected] Follow this and additional works at: https://digitalcommons.utep.edu/open_etd Part of the Biology Commons, Developmental Biology Commons, Evolution Commons, and the Zoology Commons Recommended Citation Portillo, Francisco, "Systematics of Leptopelis (Anura: Arthroleptidae) from the Itombwe Plateau, Eastern Democratic Republic of the Congo" (2012). Open Access Theses & Dissertations. 1906. https://digitalcommons.utep.edu/open_etd/1906 This is brought to you for free and open access by DigitalCommons@UTEP. It has been accepted for inclusion in Open Access Theses & Dissertations by an authorized administrator of DigitalCommons@UTEP. For more information, please contact [email protected]. SYSTEMATICS OF LEPTOPELIS (ANURA: ARTHROLEPTIDAE) FROM THE ITOMBWE PLATEAU, EASTERN DEMOCRATIC REPUBLIC OF THE CONGO FRANK PORTILLO Department of Biological Sciences APPROVED: ______________________________ Eli Greenbaum, Ph.D., Chair ______________________________ Jerry D. Johnson, Ph.D. ______________________________ Rip Langford, Ph.D. ______________________________________ Benjamin C. Flores, Ph.D. Dean of the Graduate School Copyright © by Frank Portillo 2012 SYSTEMATICS OF LEPTOPELIS (ANURA: ARTHROLEPTIDAE) FROM THE ITOMBWE PLATEAU, EASTERN DEMOCRATIC REPUBLIC OF THE CONGO by FRANK PORTILLO, B.S. THESIS Presented to the Faculty of the Graduate School of The University of Texas at El Paso in Partial Fulfillment of the Requirements for the Degree of MASTER OF SCIENCE Department of Biological Sciences THE UNIVERSITY OF TEXAS AT EL PASO December 2012 ACKNOWLEDGMENTS First I would like to thank my family for their love and support throughout my life. -
3Systematics and Diversity of Extant Amphibians
Systematics and Diversity of 3 Extant Amphibians he three extant lissamphibian lineages (hereafter amples of classic systematics papers. We present widely referred to by the more common term amphibians) used common names of groups in addition to scientifi c Tare descendants of a common ancestor that lived names, noting also that herpetologists colloquially refer during (or soon after) the Late Carboniferous. Since the to most clades by their scientifi c name (e.g., ranids, am- three lineages diverged, each has evolved unique fea- bystomatids, typhlonectids). tures that defi ne the group; however, salamanders, frogs, A total of 7,303 species of amphibians are recognized and caecelians also share many traits that are evidence and new species—primarily tropical frogs and salaman- of their common ancestry. Two of the most defi nitive of ders—continue to be described. Frogs are far more di- these traits are: verse than salamanders and caecelians combined; more than 6,400 (~88%) of extant amphibian species are frogs, 1. Nearly all amphibians have complex life histories. almost 25% of which have been described in the past Most species undergo metamorphosis from an 15 years. Salamanders comprise more than 660 species, aquatic larva to a terrestrial adult, and even spe- and there are 200 species of caecilians. Amphibian diver- cies that lay terrestrial eggs require moist nest sity is not evenly distributed within families. For example, sites to prevent desiccation. Thus, regardless of more than 65% of extant salamanders are in the family the habitat of the adult, all species of amphibians Plethodontidae, and more than 50% of all frogs are in just are fundamentally tied to water. -
BOA5.1-2 Frog Biology, Taxonomy and Biodiversity
The Biology of Amphibians Agnes Scott College Mark Mandica Executive Director The Amphibian Foundation [email protected] 678 379 TOAD (8623) Phyllomedusidae: Agalychnis annae 5.1-2: Frog Biology, Taxonomy & Biodiversity Part 2, Neobatrachia Hylidae: Dendropsophus ebraccatus CLassification of Order: Anura † Triadobatrachus Ascaphidae Leiopelmatidae Bombinatoridae Alytidae (Discoglossidae) Pipidae Rhynophrynidae Scaphiopopidae Pelodytidae Megophryidae Pelobatidae Heleophrynidae Nasikabatrachidae Sooglossidae Calyptocephalellidae Myobatrachidae Alsodidae Batrachylidae Bufonidae Ceratophryidae Cycloramphidae Hemiphractidae Hylodidae Leptodactylidae Odontophrynidae Rhinodermatidae Telmatobiidae Allophrynidae Centrolenidae Hylidae Dendrobatidae Brachycephalidae Ceuthomantidae Craugastoridae Eleutherodactylidae Strabomantidae Arthroleptidae Hyperoliidae Breviceptidae Hemisotidae Microhylidae Ceratobatrachidae Conrauidae Micrixalidae Nyctibatrachidae Petropedetidae Phrynobatrachidae Ptychadenidae Ranidae Ranixalidae Dicroglossidae Pyxicephalidae Rhacophoridae Mantellidae A B † 3 † † † Actinopterygian Coelacanth, Tetrapodomorpha †Amniota *Gerobatrachus (Ray-fin Fishes) Lungfish (stem-tetrapods) (Reptiles, Mammals)Lepospondyls † (’frogomander’) Eocaecilia GymnophionaKaraurus Caudata Triadobatrachus 2 Anura Sub Orders Super Families (including Apoda Urodela Prosalirus †) 1 Archaeobatrachia A Hyloidea 2 Mesobatrachia B Ranoidea 1 Anura Salientia 3 Neobatrachia Batrachia Lissamphibia *Gerobatrachus may be the sister taxon Salientia Temnospondyls -
FROGLOG Newsletter of the IUCN /SSC Amphibian Specialist Group (ASG)
Pyxicephalus adspersus byTim Halliday ISSN 1026-0269 FROGLOG Newsletter of the IUCN /SSC Amphibian Specialist Group (ASG) February 2007, Number 79 to cause mass mortality. Kevin but is under continuous threat from Amphibian Declines in Africa Smith reported studies of stream a variety of factors, including water By Tim Halliday frogs in the Drakensburg extraction and climate change. The 8th meeting of the where mortality does occur, at Because its tadpoles take more Herpetological Association of higher altitudes, in Strongylopus than a year to reach metamorpho- Africa (HAA) was held in hymenopus, but the impact of this sis, it is very dependent on Potchefstroom, South Africa from on populations is not yet clear. perennial streams. John Measey 24 to 27 November, 2006. The He also reported that chytrid- described his work on the meeting, sponsored by the DAPTF, infected tadpoles of Heleophryne landscape genetics of the Kenyan was organised by Louis du Preez. natalensis develop distinctive frog Schoutedenella xenodacty- It provided a very interesting markings around their mouthparts; loides which, surprisingly, suggests overview of work on amphibians no mass mortality in this species that this tiny frog can disperse long currently going on in southern has been observed. distances across unsuitable dry Africa, including a number of The African bullfrog savannah. projects funded by the DAPTF. Pyxicephalus adspersus is Ernst Baard reported on recent In a workshop on amphibian threatened by accelerating habitat changes in legislation and policy in declines, Les Minter reviewed the loss in many parts of its range; South Africa with regard to status of southern African while many breeding sites are protected, threatened, alien and amphibians; 20 endemic species protected, less attention has been invasive species, and was are endangered, and habitat paid to its terrestrial habitat.