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Supplementary Information
Supplementary Information This text file includes: Supplementary Methods Supplementary Figure 1-13, 15-30 Supplementary Table 1-8, 16, 20-21, 23, 25-37, 40-41 1 1. Samples, DNA extraction and genome sequencing 1.1 Ethical statements and sample storage The ethical statements of collecting and processing tissue samples for each species are listed as follows: Myotis myotis: All procedures were carried out in accordance with the ethical guidelines and permits (AREC-13-38-Teeling) delivered by the University College Dublin and the Préfet du Morbihan, awarded to Emma Teeling and Sébastien Puechmaille respectively. A single M. myotis individual was humanely sacrificed given that she had lethal injuries, and dissected. Rhinolophus ferrumequinum: All the procedures were conducted under the license (Natural England 2016-25216-SCI-SCI) issued to Gareth Jones. The individual bat died unexpectedly and suddenly during sampling and was dissected immediately. Pipistrellus kuhlii: The sampling procedure was carried out following all the applicable national guidelines for the care and use of animals. Sampling was done in accordance with all the relevant wildlife legislation and approved by the Ministry of Environment (Ministero della Tutela del Territorio e del Mare, Aut.Prot. N˚: 13040, 26/03/2014). Molossus molossus: All sampling methods were approved by the Ministerio de Ambiente de Panamá (SE/A-29-18) and by the Institutional Animal Care and Use Committee of the Smithsonian Tropical Research Institute (2017-0815-2020). Phyllostomus discolor: P. discolor bats originated from a breeding colony in the Department Biology II of the Ludwig-Maximilians-University in Munich. Approval to keep and breed the bats was issued by the Munich district veterinary office. -
A Recent Bat Survey Reveals Bukit Barisan Selatan Landscape As A
A Recent Bat Survey Reveals Bukit Barisan Selatan Landscape as a Chiropteran Diversity Hotspot in Sumatra Author(s): Joe Chun-Chia Huang, Elly Lestari Jazdzyk, Meyner Nusalawo, Ibnu Maryanto, Maharadatunkamsi, Sigit Wiantoro, and Tigga Kingston Source: Acta Chiropterologica, 16(2):413-449. Published By: Museum and Institute of Zoology, Polish Academy of Sciences DOI: http://dx.doi.org/10.3161/150811014X687369 URL: http://www.bioone.org/doi/full/10.3161/150811014X687369 BioOne (www.bioone.org) is a nonprofit, online aggregation of core research in the biological, ecological, and environmental sciences. BioOne provides a sustainable online platform for over 170 journals and books published by nonprofit societies, associations, museums, institutions, and presses. Your use of this PDF, the BioOne Web site, and all posted and associated content indicates your acceptance of BioOne’s Terms of Use, available at www.bioone.org/page/terms_of_use. Usage of BioOne content is strictly limited to personal, educational, and non-commercial use. Commercial inquiries or rights and permissions requests should be directed to the individual publisher as copyright holder. BioOne sees sustainable scholarly publishing as an inherently collaborative enterprise connecting authors, nonprofit publishers, academic institutions, research libraries, and research funders in the common goal of maximizing access to critical research. Acta Chiropterologica, 16(2): 413–449, 2014 PL ISSN 1508-1109 © Museum and Institute of Zoology PAS doi: 10.3161/150811014X687369 A recent -
Andhra Pradesh
PROFILES OF SELECTED NATIONAL PARKS AND SANCTUARIES OF INDIA JULY 2002 EDITED BY SHEKHAR SINGH ARPAN SHARMA INDIAN INSTITUTE OF PUBLIC ADMINISTRATION NEW DELHI CONTENTS STATE NAME OF THE PA ANDAMAN AND NICOBAR CAMPBELL BAY NATIONAL PARK ISLANDS GALATHEA NATIONAL PARK MOUNT HARRIET NATIONAL PARK NORTH BUTTON ISLAND NATIONAL PARK MIDDLE BUTTON ISLAND NATIONAL PARK SOUTH BUTTON ISLAND NATIONAL PARK RANI JHANSI MARINE NATIONAL PARK WANDOOR MARINE NATIONAL PARK CUTHBERT BAY WILDLIFE SANCTUARY GALATHEA BAY WILDLIFE SANCTUARY INGLIS OR EAST ISLAND SANCTUARY INTERVIEW ISLAND SANCTUARY LOHABARRACK OR SALTWATER CROCODILE SANCTUARY ANDHRA PRADESH ETURUNAGARAM SANCTUARY KAWAL WILDLIFE SANCTUARY KINNERSANI SANCTUARY NAGARJUNASAGAR-SRISAILAM TIGER RESERVE PAKHAL SANCTUARY PAPIKONDA SANCTUARY PRANHITA WILDLIFE SANCTUARY ASSAM MANAS NATIONAL PARK GUJARAT BANSDA NATIONAL PARK PURNA WILDLIFE SANCTUARY HARYANA NAHAR SANCTUARY KALESAR SANCTUARY CHHICHHILA LAKE SANCTUARY ABUBSHEHAR SANCTUARY BIR BARA VAN JIND SANCTUARY BIR SHIKARGAH SANCTUARY HIMACHAL PRADESH PONG LAKE SANCTUARY RUPI BHABA SANCTUARY SANGLA SANCTUARY KERALA SILENT VALLEY NATIONAL PARK ARALAM SANCTUARY CHIMMONY SANCTUARY PARAMBIKULAM SANCTUARY PEECHI VAZHANI SANCTUARY THATTEKAD BIRD SANCTUARY WAYANAD WILDLIFE SANCTUARY MEGHALAYA BALPAKARAM NATIONAL PARK SIJU WILDLIFE SANCTUARY NOKREK NATIONAL PARK NONGKHYLLEM WILDLIFE SANCTUARY MIZORAM MURLEN NATIONAL PARK PHAWNGPUI (BLUE MOUNTAIN) NATIONAL 2 PARK DAMPA WILDLIFE SANCTUARY KHAWNGLUNG WILDLIFE SANCTUARY LENGTENG WILDLIFE SANCTUARY NGENGPUI WILDLIFE -
Molecular Phylogeny of Mobatviruses (Hantaviridae) in Myanmar and Vietnam
viruses Article Molecular Phylogeny of Mobatviruses (Hantaviridae) in Myanmar and Vietnam Satoru Arai 1, Fuka Kikuchi 1,2, Saw Bawm 3 , Nguyễn Trường Sơn 4,5, Kyaw San Lin 6, Vương Tân Tú 4,5, Keita Aoki 1,7, Kimiyuki Tsuchiya 8, Keiko Tanaka-Taya 1, Shigeru Morikawa 9, Kazunori Oishi 1 and Richard Yanagihara 10,* 1 Infectious Disease Surveillance Center, National Institute of Infectious Diseases, Tokyo 162-8640, Japan; [email protected] (S.A.); [email protected] (F.K.); [email protected] (K.A.); [email protected] (K.T.-T.); [email protected] (K.O.) 2 Department of Chemistry, Faculty of Science, Tokyo University of Science, Tokyo 162-8601, Japan 3 Department of Pharmacology and Parasitology, University of Veterinary Science, Yezin, Nay Pyi Taw 15013, Myanmar; [email protected] 4 Institute of Ecology and Biological Resources, Vietnam Academy of Science and Technology, Hanoi, Vietnam; [email protected] (N.T.S.); [email protected] (V.T.T.) 5 Graduate University of Science and Technology, Vietnam Academy of Science and Technology, Hanoi, Vietnam 6 Department of Aquaculture and Aquatic Disease, University of Veterinary Science, Yezin, Nay Pyi Taw 15013, Myanmar; [email protected] 7 Department of Liberal Arts, Faculty of Science, Tokyo University of Science, Tokyo 162-8601, Japan 8 Laboratory of Bioresources, Applied Biology Co., Ltd., Tokyo 107-0062, Japan; [email protected] 9 Department of Veterinary Science, National Institute of Infectious Diseases, Tokyo 162-8640, Japan; [email protected] 10 Pacific Center for Emerging Infectious Diseases Research, John A. -
Karyotype Evolution in the Horseshoe Bat Rhinolophus Sedulus by Whole-Arm Reciprocal Translocation (WART)
Original Article Cytogenet Genome Res 2014;143:241–250 Accepted: May 5, 2014 DOI: 10.1159/000365824 by M. Schmid Published online: August 16, 2014 Karyotype Evolution in the Horseshoe Bat Rhinolophus sedulus by Whole-Arm Reciprocal Translocation (WART) a b d c Marianne Volleth Klaus-Gerhard Heller Hoi-Sen Yong Stefan Müller a b Department of Human Genetics, Otto von Guericke University, Magdeburg , Department of Biology, Humboldt c University, Berlin , and Institute of Human Genetics, University Hospital, Ludwig Maximilian University, Munich , d Germany; Institute of Biological Sciences, University of Malaya, Kuala Lumpur , Malaysia Key Words tence of a hybrid zone at the sampling locality is thought to Chiroptera · FISH · Karyotype evolution · Mammalia · be rather improbable, the WART may indicate ongoing Rhinolophidae · WART karyotype evolution in this taxon. © 2014 S. Karger AG, Basel Abstract Robertsonian (centric) fusion or fission is one of the predom- Karyotypes may be shaped by different kinds of rear- inant modes of chromosomal rearrangement in karyotype rangements, such as inversions, translocations, and Rob- evolution among mammals. However, in karyotypes com- ertsonian (centric) fissions and fusions. The last type is posed of only bi-armed chromosomes, creation of new chro- thought to be the most common mode within Mammalia, mosomal arm combinations in one step is possible only via at least among rearrangements detected by conventional whole-arm reciprocal translocation (WART). Although this cytogenetic techniques in the past. A relatively rarely re- type of rearrangement has often been proposed to play an ported type of rearrangement is whole-arm reciprocal important role in chromosomal evolution, direct observa- translocation (WART) by which entire chromosomal tions of WARTs remained rare, and, in most cases, were found arms are reciprocally exchanged between 2 chromo- in hybrids of chromosomal races in the genera Mus and somes. -
Ebola, KFD and Bats
Journal of Communicable Diseases Volume 51, Issue 4 - 2019, Pg. No. 69-72 Peer Reviewed & Open Access Journal Review Article Ebola, KFD and Bats PK Rajagopalan Former Director, Vector Control Research Center, Indian Council of Medical Research and formerly: WHO STAC Member, WHO Consultant and WHO Expert Committee Member on Malaria, Filariasis and Vector Control. DOI: https://doi.org/10.24321/0019.5138.201939 INFO ABSTRACT E-mail Id: The headline in the Times of India, dated July 23, 2019, “India Needs [email protected] to Prepare for Ebola, Other Viral Diseases” was frightening. It quotes Orcid Id: an article in Indian Journal of Medical Research, which states “Bats https://orcid.org/0000-0002-8324-3096 are thought to be the natural reservoirs of this virus…..India is home How to cite this article: to a great diversity of bat species….” But Ebola has not yet come to Rajagopalan PK. Ebola, KFD and Bats. J Commun India, though there is every possibility. But what about Kyasanur Forest Dis 2019; 51(4): 69-72. Disease (KFD), which is already in India and which has links with an insectivorous bat? Recognized in 1957, the virus was isolated in 1969 Date of Submission: 2019-08-22 over fifty years ago from four insectivorous bats, Rhinolophus rouxii, Date of Acceptance: 2019-12-23 and from Ornithodoros ticks collected from the roosting habitat of these bats, (Ind. J. Med. Res, 1969, 905-8). KFD came as a big enough epidemic in 1957, but later petered out and then sporadically appeared throughout the Western Ghat region, from Kerala to Gujarat and an epidemic resurfacing in the oldest theater in January 2019! There were many publications in India about investigations done in these areas, but none of them mentioned anything about bats. -
INSIGHTS INTO RELATIONSHIPS AMONG RODENT LINEAGES BASED on MITOCHONDRIAL GENOME SEQUENCE DATA a Dissertation by LAURENCE JOHN FR
INSIGHTS INTO RELATIONSHIPS AMONG RODENT LINEAGES BASED ON MITOCHONDRIAL GENOME SEQUENCE DATA A Dissertation by LAURENCE JOHN FRABOTTA Submitted to the Office of Graduate Studies of Texas A&M University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY December 2005 Major Subject: Zoology INSIGHTS INTO RELATIONSHIPS AMONG RODENT LINEAGES BASED ON MITOCHONDRIAL GENOME SEQUENCE DATA A Dissertation by LAURENCE JOHN FRABOTTA Submitted to the Office of Graduate Studies of Texas A&M University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY Approved by: Chair of Committee, Rodney L. Honeycutt Committee Members, James B. Woolley John W. Bickham James R. Manhart Head of Department, Vincent M. Cassone December 2005 Major Subject: Zoology iii ABSTRACT Insights into Relationships among Rodent Lineages Based on Mitochondrial Genome Sequence Data. (December 2005) Laurence John Frabotta, B.S.; M.S., California State University, Long Beach Chair of Advisory Committee: Dr. Rodney L. Honeycutt This dissertation has two major sections. In Chapter II, complete mitochondrial (mt DNA) genome sequences were used to construct a hypothesis for affinities of most major lineages of rodents that arose quickly in the Eocene and were well established by the end of the Oligocene. Determining the relationships among extant members of such old lineages can be difficult. Two traditional schemes on subordinal classification of rodents have persisted for over a century, dividing rodents into either two or three suborders, with relationships among families or superfamilies remaining problematic. The mtDNA sequences for four new rodent taxa (Aplodontia, Cratogeomys, Erethizon, and Hystrix), along with previously published Euarchontoglires taxa, were analyzed under parsimony, likelihood, and Bayesian criteria. -
Index of Handbook of the Mammals of the World. Vol. 9. Bats
Index of Handbook of the Mammals of the World. Vol. 9. Bats A agnella, Kerivoula 901 Anchieta’s Bat 814 aquilus, Glischropus 763 Aba Leaf-nosed Bat 247 aladdin, Pipistrellus pipistrellus 771 Anchieta’s Broad-faced Fruit Bat 94 aquilus, Platyrrhinus 567 Aba Roundleaf Bat 247 alascensis, Myotis lucifugus 927 Anchieta’s Pipistrelle 814 Arabian Barbastelle 861 abae, Hipposideros 247 alaschanicus, Hypsugo 810 anchietae, Plerotes 94 Arabian Horseshoe Bat 296 abae, Rhinolophus fumigatus 290 Alashanian Pipistrelle 810 ancricola, Myotis 957 Arabian Mouse-tailed Bat 164, 170, 176 abbotti, Myotis hasseltii 970 alba, Ectophylla 466, 480, 569 Andaman Horseshoe Bat 314 Arabian Pipistrelle 810 abditum, Megaderma spasma 191 albatus, Myopterus daubentonii 663 Andaman Intermediate Horseshoe Arabian Trident Bat 229 Abo Bat 725, 832 Alberico’s Broad-nosed Bat 565 Bat 321 Arabian Trident Leaf-nosed Bat 229 Abo Butterfly Bat 725, 832 albericoi, Platyrrhinus 565 andamanensis, Rhinolophus 321 arabica, Asellia 229 abramus, Pipistrellus 777 albescens, Myotis 940 Andean Fruit Bat 547 arabicus, Hypsugo 810 abrasus, Cynomops 604, 640 albicollis, Megaerops 64 Andersen’s Bare-backed Fruit Bat 109 arabicus, Rousettus aegyptiacus 87 Abruzzi’s Wrinkle-lipped Bat 645 albipinnis, Taphozous longimanus 353 Andersen’s Flying Fox 158 arabium, Rhinopoma cystops 176 Abyssinian Horseshoe Bat 290 albiventer, Nyctimene 36, 118 Andersen’s Fruit-eating Bat 578 Arafura Large-footed Bat 969 Acerodon albiventris, Noctilio 405, 411 Andersen’s Leaf-nosed Bat 254 Arata Yellow-shouldered Bat 543 Sulawesi 134 albofuscus, Scotoecus 762 Andersen’s Little Fruit-eating Bat 578 Arata-Thomas Yellow-shouldered Talaud 134 alboguttata, Glauconycteris 833 Andersen’s Naked-backed Fruit Bat 109 Bat 543 Acerodon 134 albus, Diclidurus 339, 367 Andersen’s Roundleaf Bat 254 aratathomasi, Sturnira 543 Acerodon mackloti (see A. -
A Checklist of the Mammals of South-East Asia
A Checklist of the Mammals of South-east Asia A Checklist of the Mammals of South-east Asia PHOLIDOTA Pangolin (Manidae) 1 Sunda Pangolin (Manis javanica) 2 Chinese Pangolin (Manis pentadactyla) INSECTIVORA Gymnures (Erinaceidae) 3 Moonrat (Echinosorex gymnurus) 4 Short-tailed Gymnure (Hylomys suillus) 5 Chinese Gymnure (Hylomys sinensis) 6 Large-eared Gymnure (Hylomys megalotis) Moles (Talpidae) 7 Slender Shrew-mole (Uropsilus gracilis) 8 Kloss's Mole (Euroscaptor klossi) 9 Large Chinese Mole (Euroscaptor grandis) 10 Long-nosed Chinese Mole (Euroscaptor longirostris) 11 Small-toothed Mole (Euroscaptor parvidens) 12 Blyth's Mole (Parascaptor leucura) 13 Long-tailed Mole (Scaptonyx fuscicauda) Shrews (Soricidae) 14 Lesser Stripe-backed Shrew (Sorex bedfordiae) 15 Myanmar Short-tailed Shrew (Blarinella wardi) 16 Indochinese Short-tailed Shrew (Blarinella griselda) 17 Hodgson's Brown-toothed Shrew (Episoriculus caudatus) 18 Bailey's Brown-toothed Shrew (Episoriculus baileyi) 19 Long-taied Brown-toothed Shrew (Episoriculus macrurus) 20 Lowe's Brown-toothed Shrew (Chodsigoa parca) 21 Van Sung's Shrew (Chodsigoa caovansunga) 22 Mole Shrew (Anourosorex squamipes) 23 Himalayan Water Shrew (Chimarrogale himalayica) 24 Styan's Water Shrew (Chimarrogale styani) Page 1 of 17 Database: Gehan de Silva Wijeyeratne, www.jetwingeco.com A Checklist of the Mammals of South-east Asia 25 Malayan Water Shrew (Chimarrogale hantu) 26 Web-footed Water Shrew (Nectogale elegans) 27 House Shrew (Suncus murinus) 28 Pygmy White-toothed Shrew (Suncus etruscus) 29 South-east -
Lesser False Vampire Bat
# 409 SMALL MAMMAL MAIL 21 January 2017 LESSER FALSE VAMPIRE BAT Megaderma spasma in Odisha IUCN Red List: Global — LC (Csorba et al. 2008) National India — LC Roosting of Megaderma spasma in Gupteswar caves of Odisha Mammalia The Lesser False Vampire Bat Megaderma spasma [Class of Mammals] Linnaeus, 1758 is one among the five species of megadermatids Chiroptera found in the Old World tropics (Wilson & Reeder 2005) and widely [Order of Bats] distributed over South and Southeast Asian countries (Csorba et Megadermatidae al. 2008). The species is found in humid areas ranging from dense [Family of False Vampire Bats] tropical moist forests in South Asia (Molur et al. 2002) to lowland Megaderma spasma primary and secondary forests in Southeast Asia (Heaney et al. [Lesser False Vampire 1991). Bat] [Common Asian Ghost The diurnal roosts include caves, abandoned buildings, Bat] temples, lofts of thatched huts, tiled roofs, tree hollows and Species described by disused mines (Csorba et al. 2008) and recently reported below Linnaeus in 1758 water tank (Devkar & Upadhyay 2015). It lives in small colonies of single individual (Debata et al. 2013) to 30 individuals (Ellis 2015) which varies seasonally. Zoo’s Print Vol. 32 | No. 1 21 # 409 SMALL MAMMAL MAIL 21 January 2017 Global Distribution (Csorba et al. 2008): South Asia — Bangladesh, India, Sri Lanka. Southeast Asia — Sumatra, Java, Sulawesi, Halmahera, Indonesia, Borneo (Brunei, Indonesia and Malaysia), Philippines. Roosting locations of Megaderma spasma in Eastern Ghats, Odisha In India, it is predominantly known from the Western Ghats and northeastern India (Bates & Harrison 1997; Csorba et al. 2008) with sporadic records from West Bengal (Molur et al. -
Molecular Evolution and Phylogenetic Importance of a Gamete Recognition Gene Zan Reveals a Unique Contribution to Mammalian Speciation
Molecular evolution and phylogenetic importance of a gamete recognition gene Zan reveals a unique contribution to mammalian speciation. by Emma K. Roberts A Dissertation In Biological Sciences Submitted to the Graduate Faculty of Texas Tech University in Partial Fulfillment of the Requirements for the Degree of DOCTOR OF PHILOSOPHY Approved Robert D. Bradley Chair of Committee Daniel M. Hardy Llewellyn D. Densmore Caleb D. Phillips David A. Ray Mark Sheridan Dean of the Graduate School May, 2020 Copyright 2020, Emma K. Roberts Texas Tech University, Emma K. Roberts, May 2020 ACKNOWLEDGMENTS I would like to thank numerous people for support, both personally and professionally, throughout the course of my degree. First, I thank Dr. Robert D. Bradley for his mentorship, knowledge, and guidance throughout my tenure in in PhD program. His ‘open door policy’ helped me flourish and grow as a scientist. In addition, I thank Dr. Daniel M. Hardy for providing continued support, knowledge, and exciting collaborative efforts. I would also like to thank the remaining members of my advisory committee, Drs. Llewellyn D. Densmore III, Caleb D. Phillips, and David A. Ray for their patience, guidance, and support. The above advisors each helped mold me into a biologist and I am incredibly gracious for this gift. Additionally, I would like to thank numerous mentors, friends and colleagues for their advice, discussions, experience, and friendship. For these reasons, among others, I thank Dr. Faisal Ali Anwarali Khan, Dr. Sergio Balaguera-Reina, Dr. Ashish Bashyal, Joanna Bateman, Karishma Bisht, Kayla Bounds, Sarah Candler, Dr. Juan P. Carrera-Estupiñán, Dr. Megan Keith, Christopher Dunn, Moamen Elmassry, Dr. -
Broad Host Range of SARS-Cov-2 Predicted by Comparative and Structural Analysis of ACE2 in Vertebrates
Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates Joana Damasa,1, Graham M. Hughesb,1, Kathleen C. Keoughc,d,1, Corrie A. Paintere,1, Nicole S. Perskyf,1, Marco Corboa, Michael Hillerg,h,i, Klaus-Peter Koepflij, Andreas R. Pfenningk, Huabin Zhaol,m, Diane P. Genereuxn, Ross Swoffordn, Katherine S. Pollardd,o,p, Oliver A. Ryderq,r, Martin T. Nweeias,t,u, Kerstin Lindblad-Tohn,v, Emma C. Teelingb, Elinor K. Karlssonn,w,x, and Harris A. Lewina,y,z,2 aThe Genome Center, University of California, Davis, CA 95616; bSchool of Biology and Environmental Science, University College Dublin, Belfield, Dublin 4, Ireland; cGraduate Program in Pharmaceutical Sciences and Pharmacogenomics, Quantitative Biosciences Consortium, University of California, San Francisco, CA 94117; dGladstone Institute of Data Science and Biotechnology, San Francisco, CA 94158; eCancer Program, Broad Institute of MIT and Harvard, Cambridge, MA 02142; fGenetic Perturbation Platform, Broad Institute of MIT and Harvard, Cambridge, MA 02142; gMax Planck Institute of Molecular Cell Biology and Genetics, 01307 Dresden, Germany; hMax Planck Institute for the Physics of Complex Systems, 01187 Dresden, Germany; iCenter for Systems Biology Dresden, 01307 Dresden, Germany; jCenter for Species Survival, Smithsonian Conservation Biology Institute, National Zoological Park, Front Royal, VA 22630; kDepartment of Computational Biology, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213; lDepartment of Ecology,