Francis Crick, James Watson

Total Page:16

File Type:pdf, Size:1020Kb

Francis Crick, James Watson Francis Crick and James Watson: And the Building Blocks of Life Edward Edelson Oxford University Press Francis Crick and James Watson And the Building Blocks of Life Image Not Available XFORD PORTRAITS INSCIENCE Owen Gingerich General Editor Francis Crick and James Watson And the Building Blocks of Life Edward Edelson Oxford University Press New York • Oxford Fondly dedicated to Hannah, the newest member of the family. Oxford University Press Oxford New York Athens Auckland Bangkok Bogotá Bombay Buenos Aires Calcutta Cape Town Dar es Salaam Delhi Florence Hong Kong Istanbul Karachi Kuala Lumpur Madras Madrid Melbourne Mexico City Nairobi Paris Singapore Taipei Tokyo Toronto Warsaw and associated companies in Berlin Ibadan Copyright © 1998 by Edward Edelson Published by Oxford University Press, Inc., 198 Madison Avenue, New York, New York 10016 Oxford is a registered trademark of Oxford University Press All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted, in any form or by any means, electronic, mechanical, photocopying, recording, or otherwise, without the prior permission of Oxford University Press. Design: Design Oasis Layout: Leonard Levitsky Picture research: Lisa Kirchner Library of Congress Cataloging-in-Publication Data Edelson, Edward James Watson and Francis Crick and the building blocks of life / Edward Edelson. p. c. — (Oxford portraits in science) Includes bibliographical references and index. ISBN 0-19-511451-5 (library edition) 1. Watson, James D., 1928– —Juvenile literature. 2. Crick, Francis, 1916– —Juvenile literature. 3. DNA—Research—Juvenile literature. 4. Molecular biolo- gists—Biography—Juvenile literature. [1.Watson, James D., 1928– . 2. Crick, Francis, 1916– . 3. Molecular biologists. 4. DNA—Research.] I. Title. II. Series. QP624.E34 1998 572.8’6’072—dc21 97-42791 CIP AC 9 8 7 6 5 4 3 2 1 Printed in the United States of America on acid-free paper On the cover: Francis Crick and James Watson in 1993; Inset: Watson and Crick in 1953. Frontispiece: Watson and Francis at the Cavendish Laboratory at Cambridge University in 1953. Contents Chapter 1. A Story of Two Men and a New Science . .8 Chapter 2. Dr. Watson Meets Mr. Crick . .14 Chapter 3. The Road to DNA . .26 Sidebar: Mendelian Genetics . .33 Chapter 4. The Emergence of Nucleic Acids . .36 Sidebar: The Waring Blendor . .49 Chapter 5. The Emergence of the Double Helix . .50 Chapter 6. How DNA Works . .70 Sidebar: Solving the Sickle-Cell Puzzle . .88 Chapter 7. Watson and the Human Genome Project . .90 Sidebar: The First Cloned Mammals . .102 Chronology . .104 Further Reading . .106 Index . .108 This page intentionally left blank XFORD PORTRAITS INSCIENCE Charles Babbage Alexander Graham Bell Nicolaus Copernicus Francis Crick & James Watson Marie Curie Charles Darwin Thomas Edison Albert Einstein Michael Faraday Enrico Fermi Benjamin Franklin Sigmund Freud Galileo Galilei William Harvey Joseph Henry Edward Jenner Johannes Kepler Othniel Charles Marsh & Edward Drinker Cope Margaret Mead Gregor Mendel Isaac Newton Louis Pasteur Linus Pauling Ivan Pavlov Ernest Rutherford Image Not Available CHAPTER 1 A Story of Two Men and a New Science This is an unusual biography, in several ways. First, it is the biography of two people, not one. The names of James Watson and Francis Crick are bound together forever. You cannot mention Watson without mentioning Crick, because the discovery they made about the molecule of life was truly a joint enterprise. (Years after the discovery, Crick recalled introducing Watson to someone at the laboratory where Crick was working. “Watson?” the person said in surprise. “I thought your name was Watson-Crick.”) This story is also unusual because the heart of their nar- rative and the discovery they achieved covers just a few years rather than a lifetime. After that achievement, they went on to do distinguished work separately and rarely worked together again. But it is the one finding that they reported in 1953 that put their names indelibly in the histo- Francis Crick and James Watson in 1993, at the ry book of science. What they discovered was the secret of 40th anniversary celebra- life, in molecular form. They were the first to describe the tion of the publication of structure of deoxyribonucleic acid, DNA, the molecule their historic Nature that carries the information of life. magazine article, in which they described the An information-carrying segment of DNA is called a molecular structure of gene. Genes determine the basic nature of all living things, DNA for the first time. 9 Francis Crick and James Watson including humans, and so DNA is considered the most important molecule of life. Specifically, genes carry the information for the production of proteins, the molecules that make up most of the body. When Watson and Crick described the structure of DNA, they thus opened the door to a new science of genetics—and, beyond that, the science of molecular biology—a field that is still growing and devel- oping, and one that is having an increasing influence on medicine and on all of biology. The names and work of many other scientists are an essential part of this story. Some of those scientists set the stage for what Watson and Crick accomplished. Some were competitors in a race to accomplish what Watson and Crick were the first to achieve. Others joined Watson and Crick to build on the DNA discovery—first to decode the genetic message carried in that molecule, then to show how infor- mation is transferred from DNA (correctly or incorrectly) to govern the production of proteins and thus to shape liv- ing things. And since this is a story of modern science, the actors in it were from a number of countries and moved around frequently, attending a variety of meetings and mov- ing from one laboratory to another, and often from country to country. Finally, the full consequences of what Watson and Crick discovered are still being explored. Theirs is a story that began more than 40 years ago, is still being told, and has implications that will extend well into the 21st century. One example of this ongoing effort is the Human Genome Project, a program to make a map of the entire human genetic apparatus, called the genome; to identify all the genes that make us what we are; and to find the complete sequence of subunits within the genome. In addition to its basic scientific value, this information can be used to detect and help treat young people and unborn children with inher- ited genetic diseases. It can also identify adults at high risk of diseases such as breast cancer, in which individual genes play a 10 A Story of Two Men and a New Science role—an effort that has already begun. Watson helped the Human Genome Project get off to a good start, serving as its director during the critical early years. Researchers building on the work done by Watson and Crick have established the technique in which genes can be manipulated and transferred. Recombinant DNA technolo- gy has become both a new industry and a new medical field. Proteins used in medicine, such as insulin and human growth hormone, are produced by genetic engineering— the process of putting the appropriate genes into corre- sponding bacteria, which then turn out large amounts of the medicinal protein. The same genetic technology is also being used in agriculture, to develop species of plants that are resistant to attack by insects and other predators, to increase production of milk and crops, and to make flowers with new colors and patterns. And now it has even become possible to clone mammals and other animals, creating exact genetic copies of individual animals by transferring DNA from one cell to another. Genetic technology is also being used in medicine, to treat genetic diseases by giving patients normal genes to replace flawed genes causing serious problems. The first attempt at human gene therapy took place in 1990. Researchers at a National Institutes of Health facility treated a young girl with a deficiency in her immune system that prevented her from responding normally to fight off infec- tious agents such as disease-causing bacteria. They gave her 1 billion immune system cells that had been genetically engineered to provide the protection she lacked. A number of other gene therapy trials have been made since then, and the field is growing. The subject of all this work is the cell, the smallest unit of living things. The body is made up of billions of cells, each with a specialized purpose. A brain cell is different from a skin cell, which is different from a muscle cell, and so on. Cells are very small, invisible to the naked eye. A sin- 11 Francis Crick and James Watson The first X-ray diffraction photograph of a stretched, dried film of DNA. X-ray diffraction photos were used to determine the three- dimensional structure of biological molecules. Image Not Available gle freckle on the back of your hand, for example, contains several thousand cells. Under a high-powered microscope, cells show two kinds of basic internal structure. Most of the cells in the human body, for example, consist mainly of a large segment called the cytoplasm, at the center of which is a small unit called a nucleus. It is the nucleus that contains DNA, the genetic material. Within the nucleus are chromosomes— furled, stringlike bodies that are made up of DNA and thus contain the genes. The nucleus also holds the cellular machinery for activating the information contained in the genes and for reproducing the chromosomes. If you could take all the chromosomes out of one cell and unfurl them, they would stretch about six feet in length.
Recommended publications
  • Braking the Genetic Code by Nierenberg
    1 REVIEW The Invention of Proteomic Code and mRNA Assisted Protein Folding. by Jan C. Biro Homulus Foundation, 612 S Flower St. #1220, 90017 CA, USA. [email protected] Keywords: Gene, code, codon, translation, wobble-base, Abbreviations (excluding standard abbreviations: 2 Abstract Background The theoretical requirements for a genetic code were well defined and modeled by George Gamow and Francis Crick in the 50-es. Their models failed. However the valid Genetic Code, provided by Nirenberg and Matthaei in 1961, ignores many theoretical requirements for a perfect Code. Something is simply missing from the canonical Code. Results The 3x redundancy of the Genetic code is usually explained as a necessity to increase the resistance of the mutation resistance of the genetic information. However it has many additional roles. 1.) It has a periodical structure which corresponds to the physico-chemical and structural properties of amino acids. 2.) It provides physico-chemical definition of codon boundaries. 3.) It defines a code for amino acid co-locations (interactions) in the coded proteins. 4.) It regulates, through wobble bases the free folding energy (and structure) of mRNAs. I shortly review the history of the Genetic Code as well as my own published observations to provide a novel, original explanation of its redundancy. Conclusions The redundant Genetic Code contains biological information which is additional to the 64/20 definition of amino acids. This additional information is used to define the 3D structure of coding nucleic acids as well as the coded proteins and it is called the Proteomic Code and mRNA Assisted Protein Folding.
    [Show full text]
  • Chem 431C-Lecture 8A Central Dogma of Molecular Biology Proteins
    Chem 431c-Lecture 8a Reminder: Wednesday is Test 2 Day Covers Chapters 25 and 26 in toto. 90 points Translation: mRNA directed 6 discussion questions. 15 points each. Work protein synthesis quickly and concisely. Answer the question asked. Some students answer more than is asked. Penalty will be levied. Chapter 27: Will the test be difficult? For some, Yes. Protein Metabolism Study major concepts. Sample Question: Describe Mismatch Repair giving unique enzymes involved and describing when it is used. Copyright © 2004 by W. H. Freeman & Company Central dogma of molecular Proteins biology Typical cell needs 1000’s of proteins. • Proteins =the Protein biosynthesis elucidation-one of greatest endproducts of the challenges in biochemistry; information There are >70 ribosomal proteins; 90% of chem pathways energy used by cell; 15,000 ribosomes; 100,000 molecules of protein factors and enzymes; 200,000 tRNA molecules, Process is complex yet fast: protein of 100 aa’s/5 sec in E.coli. Ribosomes line the endoplasmic reticulum Genetic Code -nucleotide triplet codon/amino acid -non overlapping (overlap would be limiting) -first 2 letters usu. fixed but 3rd may be variable -degenerate: more than 1 codon/amino acid - reading frame determined by initiation codon – AUG; termination codons are UAA, UAG and UGA 1 Crick’s adaptor hypothesis Triplet non-overlapping code Just like assembling a Lego molecule? How many possible unique triplet codons can you have? Reading Frame in genetic code Open reading frame (ORF) In a random sequence of nucleotides, probability of 1/ 20 codons in each reading frame is a termination codon. So if it doesn’t have a termination codon among 50 or more, it’s an “open reading frame”(ORF).
    [Show full text]
  • Structure and Function of the Ribosome
    7 OCTOBER 2009 Scientifc Background on the Nobel Prize in Chemistry 2009 STRUCTURE AND FUNCTION OF THE RIBOSOME THE ROYAL SWEDISH ACADEMY OF SCIENCES has as its aim to promote the sciences and strengthen their infuence in society. BOX 50005 (LILLA FRESCATIVÄGEN 4 A), SE-104 05 STOCKHOLM, SWEDEN Nobel Prize® and the Nobel Prize® medal design mark TEL +46 8 673 95 00, FAX +46 8 15 56 70, [email protected] HTTP://KVA.SE are registrated trademarks of the Nobel Foundation Structure and function of the ribosome This year’s Nobel Prize in Chemistry is awarded to Venkatraman Ramakrishnan, Thomas A. Steitz and Ada E. Yonath for their studies of the structure and function of the ribosome. Their scientific contributions and the historical context are summarized below. Brief introduction to the ribosome The ribosome and the central dogma. The genetic information in living systems is stored in the genome sequences of their DNA (deoxyribonucleic acid). A large part of these sequences encode proteins which carry out most of the functional tasks in all extant organisms. The DNA information is made available by transcription of the genes to mRNAs (messenger ribonucleic acids) that subsequently are translated into the various amino acid sequences of all the proteins of an organism. This is the central dogma (Crick, 1970) of molecular biology in its simplest form (Figure 1) DNA () gene →transcription RNA ( mRNA )→translation Protein ( peptide sequence) Figure 1. The central dogma revisited. The genetic information in DNA is preserved by replication of the genome (Watson and Crick, 1953a, b) carried out by DNA polymerase (Kornberg, 1969) so that each daughter cell can receive one genome copy at every cell division.
    [Show full text]
  • Ribonucleobase Interactions and Their Potential for Ribosome-Free Encoding
    www.nature.com/scientificreports OPEN Cross-species conservation of complementary amino acid- ribonucleobase interactions and Received: 31 March 2015 Accepted: 02 November 2015 their potential for ribosome-free Published: 10 December 2015 encoding John G. D. Cannon1, Rachel M. Sherman2,3, Victoria M. Y. Wang4,† & Grace A. Newman5 The role of amino acid-RNA nucleobase interactions in the evolution of RNA translation and protein- mRNA autoregulation remains an open area of research. We describe the inference of pairwise amino acid-RNA nucleobase interaction preferences using structural data from known RNA- protein complexes. We observed significant matching between an amino acid’s nucleobase affinity and corresponding codon content in both the standard genetic code and mitochondrial variants. Furthermore, we showed that knowledge of nucleobase preferences allows statistically significant prediction of protein primary sequence from mRNA using purely physiochemical information. Interestingly, ribosomal primary sequences were more accurately predicted than non-ribosomal sequences, suggesting a potential role for direct amino acid-nucleobase interactions in the genesis of amino acid-based ribosomal components. Finally, we observed matching between amino acid- nucleobase affinities and corresponding mRNA sequences in 35 evolutionarily diverse proteomes. We believe these results have important implications for the study of the evolutionary origins of the genetic code and protein-mRNA cross-regulation. Despite having been discovered more than 50 years ago1,2 and studied for nearly as long3, the evolutionary basis of the universal genetic code remains an elusive challenge4. Even before the discovery of messenger RNA (mRNA) and the elucidation of the genetic code George Gamow proposed a stereochemical hypothesis based on the then recently determined structure of DNA5.
    [Show full text]
  • On the Uniqueness of the Standard Genetic Code
    life Article On the Uniqueness of the Standard Genetic Code Gabriel S. Zamudio and Marco V. José * Theoretical Biology Group, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, México D.F. 04510, Mexico; [email protected] * Correspondence: [email protected]; Tel.: +52-5562-3894 Academic Editor: Koji Tamura Received: 15 December 2016; Accepted: 8 February 2017; Published: 13 February 2017 Abstract: In this work, we determine the biological and mathematical properties that are sufficient and necessary to uniquely determine both the primeval RNY (purine-any base-pyrimidine) code and the standard genetic code (SGC). These properties are: the evolution of the SGC from the RNY code; the degeneracy of both codes, and the non-degeneracy of the assignments of aminoacyl-tRNA synthetases (aaRSs) to amino acids; the wobbling property; the consideration that glycine was the first amino acid; the topological and symmetrical properties of both codes. Keywords: RNY code; Standard genetic code; evolution of the genetic code; frozen code; degeneracy; aminoacyl-tRNA synthetases; symmetry 1. Introduction A fundamental feature of all life forms existing on Earth is that, with several minor exceptions, they share the same standard genetic code (SGC). This universality led Francis Crick to propose the frozen accident hypothesis [1], i.e., the SGC does not change. According to Crick [1], the SGC code remained universal because any change would be lethal, or would have been very strongly selected against and extinguished. The astonishing diversity of living beings in the history of the biosphere has not been halted by a frozen SGC. The inherent structure of the frozen SGC, in concert with environmental influences, has unleashed life from determinism.
    [Show full text]
  • Environmental Perturbations Lift the Degeneracy of the Genetic Code to Regulate Protein Levels in Bacteria
    Environmental perturbations lift the degeneracy of the genetic code to regulate protein levels in bacteria Arvind R. Subramaniama, Tao Panb, and Philippe Cluzela,1 aFAS Center for Systems Biology, Department of Molecular and Cellular Biology, and School of Engineering and Applied Sciences, Harvard University, Cambridge, MA 02138; and bDepartment of Biochemistry and Molecular Biology and Institute of Biophysical Dynamics, University of Chicago, Chicago, IL 60637 Edited by Rachel Green, Johns Hopkins University, Baltimore, MD, and approved November 16, 2012 (received for review July 9, 2012) The genetic code underlying protein synthesis is a canonical exam- Escherichia coli as a model system to investigate whether the ple of a degenerate biological system. Degeneracies in physical degeneracy of the genetic code can be lifted by environmental and biological systems can be lifted by external perturbations, thus perturbations and how degeneracy lifting could provide a general allowing degenerate systems to exhibit a wide range of behaviors. strategy to adapt protein synthesis to environmental changes. Here we show that the degeneracy of the genetic code is lifted by environmental perturbations to regulate protein levels in living Results cells. By measuring protein synthesis rates from a synthetic reporter DegeneracyLiftinguponAminoAcidLimitation.We considered library in Escherichia coli,wefind that environmental perturbations, synonymous codons for seven amino acids: Leu, Arg, Ser, Pro, Ile, such as reduction of cognate amino acid supply, lift the degeneracy Gln, and Phe. This set of seven amino acids is representative of of the genetic code by splitting codon families into a hierarchy of the degeneracy of the genetic code, in that it includes six-, four-, robust and sensitive synonymous codons.
    [Show full text]
  • Aminoacyl-Trna Synthetases
    Downloaded from rnajournal.cshlp.org on September 23, 2021 - Published by Cold Spring Harbor Laboratory Press Aminoacyl-tRNA Synthetases Miguel Angel Rubio Gomez1,2 and Michael Ibba1,2, † 1Center for RNA Biology, The Ohio State University, 484 West 12th Avenue, Columbus, Ohio 43210 2Department of Microbiology, The Ohio State University, 318 West 12th Avenue, Columbus, Ohio 43210 †Corresponding author and person to whom requests should be addressed: Michael Ibba, PhD Department of Microbiology The Ohio State University 318 West 12th Avenue, Columbus, Ohio 43210 Phone: 614-292-2120 E-mail: [email protected] Running title: Aminoacyl-tRNA synthetases Keywords: Aminoacyl-tRNA synthetases, tRNA, protein translation Rubio, MA 1 Downloaded from rnajournal.cshlp.org on September 23, 2021 - Published by Cold Spring Harbor Laboratory Press The aminoacyl-tRNA synthetases are an essential and universally distributed family of enzymes that play a critical role in protein synthesis, pairing tRNAs with their cognate amino acids for decoding mRNAs according to the genetic code. Synthetases help to ensure accurate translation of the genetic code by using both highly accurate cognate substrate recognition and stringent proofreading of non-cognate products. While alterations in the quality control mechanisms of synthetases are generally detrimental to cellular viability, recent studies suggest that in some instances such changes facilitate adaption to stress conditions. Beyond their central role in translation, synthetases are also emerging as key players in an increasing number of other cellular processes, with far reaching consequences in health and disease. The biochemical versatility of the synthetases has also proven pivotal in efforts to expand the genetic code, further emphasizing the wide-ranging roles of the aminoacyl-tRNA synthetase family in synthetic and natural biology.
    [Show full text]
  • The Death of Francis Crick: the End of a Golden Age in Biology
    Commentary The death of Francis Crick: the end of a golden age in biology Born in 1916, Francis Harry Compton Crick studied physics at University College, London, where he devoted his first scientific efforts to studying the viscosity of water at high temperatures. During the war, he participated in the development of ‘noncontact’ magnetic and acoustic mines. Like many other young physicists, he switched to biology after the Second World War, bored by the now dull studies pursued in physics, and attracted by the new frontier of knowledge that was biology, a discipline where the concepts and techniques of physics were desperately needed. He spent two years at the Strangeways Laboratory in Cambridge studying the physical properties of cytoplasm, and joined the Medical Research Unit at Cavendish laboratory headed by Max Perutz to study protein structure by X-ray diffraction studies. The decision he made with Jim Watson to focus on the structure of DNA, and the huge impact this structure had on the development of molecular biology, are well known. Francis Crick received with Jim Watson and Maurice Wilkins the Nobel Prize in Physiology or Medicine in 1962 for this discovery. To consider that determining the structure of DNA was the right way to understand the power of genes was a brilliant piece of foresight at a time when the results of Oswald Avery showing that genes were made of DNA were largely ignored. Watson was the leader in the construction of the model, adopting a strategy previously used by Linus Pauling for the study of proteins. Given his excellent knowledge of crystallography and X-ray diffraction, Francis Crick had all the skills required to pro- vide the firm materials for the elaboration of the model and to relate it to the X-ray diffraction pattern obtained by Rosalind Franklin.
    [Show full text]
  • The Genetic Code Properties of the Genetic Code
    atgattattc atcctcagat gagagtttat ccgtcagcca cttcagtttc tctaaacaga atgattattc atcctcagat gagagtttat ccgtcagcca cttcagtttc tcta aacagaatgattattc atcctcagat gagagtttat ccgtcagcca ct tcagtttc tctaaacagaatgattattc atcctcagat gag agtttat ccgtcagccMaster course:tcagtttc tctaaacagaatgattattc atcctcaga t gagagtttat ccgtcagcca cttcagtttc tctaaacaga atgattattc atcc tcagat gagagtttat ccgtcagcca cttcagtttc tctaaacaga atgattattcTHE atcctcagat GENETIC gagagtttat CODE ccgtcagcca cttcagtttc tcta aacagaatgattattc atcctcagat gagagtttat ccgtcagcca ct tcagtttc tctaaacagaatgattattc atcctcagat gag agtttat ccgtcagcca cttcagtttc tctaaacagaatgattattc atcctcaga t gagagtttat ccgtcagcca cttcagtttc tctaaacaga atgattattc atcctcagat gagagtttat ccgtcagcca cttcagtttc tctaaacaga atgattattc atcctcagatA. Schneider gagagtttat ccgtcagcca cttcagtttc tcta aacagaatgattattc atcctcagat gagagtttat ccgtcagcca ct tcagtttc tctaaacagaatgattattc atcctcagat gag agtttat ccgtcagcca cttcagtttc tctaaacagaatgattattc atcctcaga t gagagtttat ccgtcagcca cttcagtttc tctaaacaga atgattattc atcctcagat gagagtttat ccgtcagcca cttcagtttc tctaaacaga atgattattc atcctcagat gagagtttat ccgtcagcca cttcagtttc tcta Properties of the genetic code Properties of the genetic code • The genetic code is degenerate -More than one codon specifies the same amino acid -Degeneracy usually occurs at the third base -Nearly all amino acids can be symbolized XY(A/G) or XY(U/C) • The genetic code is (nearly) universal The central dogma prions F. Crick. (1970) Nature, vol. 227, pp. 561-563 Role of tRNAs 3’-end (becomes charged
    [Show full text]
  • BIOCHEMICAL PROPERTIES of CLASS I LYSYL-Trna
    BIOCHEMICAL PROPERTIES OF CLASS I LYSYL-tRNA SYNTHETASE DISSERTATION A Thesis Presented in Partial Fulfillment of the Requirements for The Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Jeffrey David Levengood, B.S. ***** The Ohio State University 2007 Dissertation Committee: Professor Michael Ibba, Adviser Professor Russ Hille Approved by Professor John Reeve _______________________________________ Professor Zucai Suo Adviser The Ohio State Biochemistry Graduate Program ABSTRACT The family of aminoacyl-tRNA synthetases (aaRSs) performs the essential cellular function of charging tRNA molecules with their cognate amino acids. This enzyme family can be divided into two unrelated classes with each evolving from different origins. Lysyl-tRNA synthetase (LysRS) is the only synthetase known to have a form in each class. The class I form (LysRS1) is found in most archaea and a few bacteria while the class II form (LysRS2) is found in all eucarya, most bacteria, and a few archaea. Steady-state kinetics were used to study the mechanisms which LysRS1 employs to recognize its substrates. The binding of both amino acid and tRNA were examined. The binding of lysine was analyzed by studying the ability of several lysine analogues to inhibit the aminoacylation reaction. It was found that the R-group plays a critical role in discrimination rather than the functional groups at the α-carbon. Within the R-group, the size of the chain was a very important point for discrimination. The binding of tRNALys was examined using both LysRS, mutated based on the modeled tRNALys bound to LysRS1, and tRNALys with mutations in the anticodon.
    [Show full text]
  • Adaptor Hypothesis, 29 Aminoacylsite(A-Site)
    Index Adaptor hypothesis, 29 order of addition of components, 47 role of 3'end in mRNA binding, Aminoacylsite(A-site), 19,21,36,41,43, ribosome binding sites from, 14,52 15,24,52 49 role of initiation factors in formation of, sequences in, 23 Aminoacyl tRNA synthetases, 33, 35, 38 49,53 23S RNA, 23 Antibiotics, role of initiator tRNA in formation of, Ribosomal subunits chloramphenicol, 38 47 preparation of, 18 cycloheximide, 38 role of mRNA in formation of, 50 role in initiation, 43, 47 edeine,47 role of rRNA in formation of, 52 subunit cycle, 59 erythromycin, 27 Initiation factors Ribosomes fusidic acid, 28, 43 Factor F, , 43 assembly map, 26 kasugamycin, 27 Factor F2 , 43, 49 biosynthesis, 28 puromycin, 20, 27, 49 Factor F 43, 53 partial reactions of, 19 spiramycin, 27 Initiator tRNA" properties of, 17 streptomycin, 27 primary sequence of, 39 reconstitution of, 25 thiostrepton, 43 properties of, 37 role in initiation complex formation, 53 role in initiation complex formation. 14, Bacteriophage, 20,32,47,55 Suppression, 37 T4,IO,24,58 Interferon, 58 Small RNA, 10, 14,37,54 Termination factors, 44 Bacteriophage RNA, Methods Termination of polypeptide synthesis, 60 cistron order of, 15 column chromatography, 13, 24, 3 I, 41 Transfer RNA coat protein gene sequences, 16, 50 electron microscopy, 9, I 7 classification of, 33 control of translation of, 53, 54, 62 NMR,36 cross linking, 27, 36,40 ribosome binding sites of, 14,52,54,62 polyacrylamide gels, 12 modulation of, 57 protein fingerprinting, 13 mutants of, 36 Cell-free systems, 10, 18
    [Show full text]
  • FM Brenner 1..26
    Copyright 2010 Cold Spring Harbor Laboratory Press. Not for distribution. Do not copy without written permission from Cold Spring Harbor Laboratory Press Contents Preface ix Acknowledgments xiii Timeline xv Prizes Awarded to Sydney Brenner xxi Prologue xxiii P ART 1 GrowingUpinSouthAfrica 1 A Potent Intellect 3 2 In Love with Science 15 3 The Science Year Alternative 29 4 Becoming an Independent Researcher 37 5 Failing the Final Year of Medical School 43 P ART 2 The Postgraduate Years 6 Viewing the DNA Model 59 7 Confronting the Genetic Code 75 8 Returning to South Africa 91 P ART 3 Deciphering the Genetic Code 9 Cambridge at Last 101 10 The MRC Laboratory of Molecular Biology 111 11 Messenger RNA—The Concept 119 12 Messenger RNA—The Validation 129 13 A Triplet Genetic Code 141 14 Deciphering the Triplet Code 149 vii Copyright 2010 Cold Spring Harbor Laboratory Press. Not for distribution. Do not copy without written permission from Cold Spring Harbor Laboratory Press viii Contents P ART 4 Complex Organisms 15 C. elegans 159 16 The Many Faces of the C. elegans Project 167 17 Progressing on Multiple Fronts 173 18 Getting Back to DNA 181 19 Gene Cloning and Genomics 193 20 Director of the LMB 203 21 Relinquishing the Directorship 215 P ART 5 Life Outside the Laboratory 22 Finding New Opening Games 227 23 Mounting a Human Genome Project 233 24 California Bound 247 25 Singapore 261 26 Mentoring Again 273 27 Enfant Terrible 285 Reference Sources and Notes 295 Index 313 See photo section between pages 110 and 111.
    [Show full text]