bioRxiv preprint doi: https://doi.org/10.1101/2021.03.03.408021; this version posted May 11, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license.
The genome of the cereal pest Sitophilus oryzae: a
transposable element haven
PARISOT Nicolas1,$, VARGAS-CHAVEZ Carlos1,2,†,$, GOUBERT Clément3,4,‡,$, BAA-
PUYOULET Patrice1, BALMAND Séverine1, BERANGER Louis1, BLANC Caroline1,
BONNAMOUR Aymeric1, BOULESTEIX Matthieu3, BURLET Nelly3, CALEVRO Federica1,
CALLAERTS Patrick5, CHANCY Théo1, CHARLES Hubert1,6, COLELLA Stefano1,§, DA
SILVA BARBOSA André7, DELL’AGLIO Elisa1, DI GENOVA Alex3,6,8, FEBVAY Gérard1,
GABALDON Toni9,10,11, GALVÃO FERRARINI Mariana1, GERBER Alexandra12, GILLET
Benjamin13, HUBLEY Robert14, HUGHES Sandrine13, JACQUIN-JOLY Emmanuelle7, MAIRE
Justin1, , MARCET-HOUBEN Marina9, MASSON Florent1,£, MESLIN Camille7, MONTAGNE
Nicolas7, MOYA Andrés2,15, RIBEIRO DE VASCONCELOS Ana Tereza12, RICHARD
Gautier16, ROSEN Jeb14, SAGOT Marie-France3,6, SMIT Arian F.A.14, STORER Jessica M.14,
VINCENT-MONEGAT Carole1, VALLIER Agnès1, VIGNERON Aurélien1,#, ZAIDMAN-REMY
Anna1, ZAMOUM Waël1, VIEIRA Cristina3,6,*, REBOLLO Rita1,*, LATORRE Amparo2,15,* and
HEDDI Abdelaziz1,*
1 Univ Lyon, INSA Lyon, INRAE, BF2I, UMR 203, 69621 Villeurbanne, France.
2 Institute for Integrative Systems Biology (I2SySBio), Universitat de València and Spanish
Research Council (CSIC), València, Spain.
3 Laboratoire de Biométrie et Biologie Evolutive, UMR5558, Université Lyon 1, Université
Lyon, Villeurbanne, France.
4 Department of Molecular Biology and Genetics, 526 Campus Rd, Cornell University, Ithaca,
New York 14853, USA.
1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.03.408021; this version posted May 11, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license.
5 KU Leuven, University of Leuven, Department of Human Genetics, Laboratory of
Behavioral and Developmental Genetics, B-3000, Leuven, Belgium.
6 ERABLE European Team, INRIA, Rhône-Alpes, France.
7 INRAE, Sorbonne Université, CNRS, IRD, UPEC, Université de Paris, Institute of Ecology
and Environmental Sciences of Paris, Versailles, France.
8 Instituto de Ciencias de la Ingeniería, Universidad de O'Higgins, Rancagua, Chile.
9 Life Sciences, Barcelona Supercomputing Centre (BSC-CNS), Barcelona, Spain.
10 Mechanisms of Disease. Institute for Research in Biomedicine (IRB), Barcelona, Spain.
11 Institut Catalan de Recerca i Estudis Avançats (ICREA), Barcelona, Spain.
12 Laboratório de Bioinformática, Laboratório Nacional de Computação Científica, Petrópolis,
Brazil.
13 Institut de Génomique Fonctionnelle de Lyon (IGFL), Université de Lyon, Ecole Normale
Supérieure de Lyon, CNRS UMR 5242, Lyon, France.
14 Institute for Systems Biology, Seattle, WA, USA.
15 Foundation for the Promotion of Sanitary and Biomedical Research of Valencian
Community (FISABIO), València, Spain.
16 IGEPP, INRAE, Institut Agro, Université de Rennes, Domaine de la Motte, 35653 Le Rheu,
France.
† Present address: Institute of Evolutionary Biology (IBE), CSIC-Universitat Pompeu Fabra,
Barcelona, Spain.
‡ Present address: Human Genetics, McGill University, Montreal, QC, Canada.
2 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.03.408021; this version posted May 11, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license.
§ Present address: LSTM, Laboratoire des Symbioses Tropicales et Méditerranéennes, IRD,
CIRAD, INRAE, SupAgro, Univ Montpellier, Montpellier, France.
£ Present address: Global Health Institute, School of Life Sciences, Ecole Polytechnique
Fédérale de Lausanne (EPFL), Lausanne 1015, Switzerland.