Fern Genomes Elucidate Land Plant Evolution and Cyanobacterial Symbioses
ARTICLES https://doi.org/10.1038/s41477-018-0188-8 Fern genomes elucidate land plant evolution and cyanobacterial symbioses Fay-Wei Li 1,2*, Paul Brouwer3, Lorenzo Carretero-Paulet4,5, Shifeng Cheng6, Jan de Vries 7, Pierre-Marc Delaux8, Ariana Eily9, Nils Koppers10, Li-Yaung Kuo 1, Zheng Li11, Mathew Simenc12, Ian Small 13, Eric Wafula14, Stephany Angarita12, Michael S. Barker 11, Andrea Bräutigam 15, Claude dePamphilis14, Sven Gould 16, Prashant S. Hosmani1, Yao-Moan Huang17, Bruno Huettel18, Yoichiro Kato19, Xin Liu 6, Steven Maere 4,5, Rose McDowell13, Lukas A. Mueller1, Klaas G. J. Nierop20, Stefan A. Rensing 21, Tanner Robison 22, Carl J. Rothfels 23, Erin M. Sigel24, Yue Song6, Prakash R. Timilsena14, Yves Van de Peer 4,5,25, Hongli Wang6, Per K. I. Wilhelmsson 21, Paul G. Wolf22, Xun Xu6, Joshua P. Der 12, Henriette Schluepmann3, Gane K.-S. Wong 6,26 and Kathleen M. Pryer9 Ferns are the closest sister group to all seed plants, yet little is known about their genomes other than that they are generally colossal. Here, we report on the genomes of Azolla filiculoides and Salvinia cucullata (Salviniales) and present evidence for episodic whole-genome duplication in ferns—one at the base of ‘core leptosporangiates’ and one specific to Azolla. One fern- specific gene that we identified, recently shown to confer high insect resistance, seems to have been derived from bacteria through horizontal gene transfer. Azolla coexists in a unique symbiosis with N2-fixing cyanobacteria, and we demonstrate a clear pattern of cospeciation between the two partners. Furthermore, the Azolla genome lacks genes that are common to arbus- cular mycorrhizal and root nodule symbioses, and we identify several putative transporter genes specific to Azolla–cyanobacte- rial symbiosis.
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