LRRC8 Family Proteins Within Lysosomes Regulate Cellular Osmoregulation and Enhance Cell Survival to Multiple Physiological Stresses
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LRRC8A Regulates Hypotonicity-Induced NLRP3 Inflammasome Activation
bioRxiv preprint doi: https://doi.org/10.1101/2020.06.11.146225; this version posted June 12, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. LRRC8A regulates hypotonicity-induced NLRP3 inflammasome activation Jack P. Green1*,#, Tessa Swanton1*, Lucy V. Morris1, Lina Y. El-Sharkawy2, James Cook1, Shi Yu1, James Beswick2, Antony Adamson3, Neil Humphreys3,4, Richard A. Bryce2, Sally Freeman2, Catherine Lawrence1,5, David Brough1,5,# 1Division of Neuroscience and Experimental Psychology, School of Biological Sciences, Faculty of Biology, Medicine and Health, Manchester Academic Health Science Centre, University of Manchester, AV Hill Building, Oxford Road, Manchester, M13 9PT, UK. 2Division of Pharmacy and Optometry, School of Health Sciences, Faculty of Biology, Medicine and Health, Manchester Academic Health Science Centre, The University of Manchester, Stopford Building, Oxford Road, Manchester, M13 9PT, UK. 3Genome Editing Unit Core Facility, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, UK. 4Present address: EMBL-Rome, Epigenetics and Neurobiology Unit, Adriano Buzzati- Traverso Campus, Via Ramarini 32, 00015 Monterotondo (RM), Italy. 5Lydia Becker Institute of Immunology and Inflammation, University of Manchester, Manchester M13 9PT, UK. * Contributed equally # To whom correspondence should be addressed: David Brough. Tel: +44 (0)161 275 5039; Email: [email protected] Jack Green. Tel +44 (0)161 306 0502; Email: [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.06.11.146225; this version posted June 12, 2020. -
Cytoplasmic Organelles
CYTOPLASMIC ORGANELLES OBJECTIVES: After completing this exercise, you should be able to: 1. Recognize features of the cytoplasm in the light microscope. 2. Identify major cellular organelles in electron micrographs. 3. Provide general functions of cellular organelles. ASSIGNMENT FOR TODAY'S LABORATORY GLASS SLIDES - https://medmicroscope.uc.edu/ SL 181 (spinal cord) rough endoplasmic reticulum SL 108 (pancreas) rough endoplasmic reticulum SL 125 (inflammation) rough endoplasmic reticulum and Golgi apparatus ELECTRON MICROGRAPHS (Gray envelope) EM 3-6, 4-5, 12-1, 16 plasma membrane EM 1-3, 2-1, 2-2, 3-5, 4-1, 10-5, 14-3 rough endoplasmic reticulum EM 4-2, 10-6, 12-3, 13-7, 14-5 smooth endoplasmic reticulum EM 5-2 and 5-inset ribosomes EM 11-1 to 11-4 Golgi apparatus EM 6-10 to 6-13, 2-3 to 2-5 also 3-4, 1-4, 12-2 and 13-6 mitochondria EM 3, 4, 16 and 17 Magnification and Resolution POSTED ELECTRON MICROGRAPHS # 1 Organelles # 6 Organelles Lab 2 Posted EMs SUPPLEMENTAL MATERIAL: SUPPLEMENTARY ELECTRON MICROGRAPHS Rhodin, J. A.G., An Atlas of Histology Plasma membrane Fig. 2-2; 2-3 Rough ER Fig 2-26; 2-29; 2-30; 2-31; 2-32 Smooth ER Fig 2-33; 2-34; 2-35 Ribosomes Fig 2-27; 2-28; 2-30; 2-31; 2-32 Golgi apparatus Fig 2-36; 2-37; 2-38 Mitochondria Fig 2-39; 2-40; 2-41 In the last lab, you were introduced to cells and extracellular matrix, followed by a focus on the nucleus. -
Abstracts Genome 10K & Genome Science 29 Aug - 1 Sept 2017 Norwich Research Park, Norwich, Uk
Genome 10K c ABSTRACTS GENOME 10K & GENOME SCIENCE 29 AUG - 1 SEPT 2017 NORWICH RESEARCH PARK, NORWICH, UK Genome 10K c 48 KEYNOTE SPEAKERS ............................................................................................................................... 1 Dr Adam Phillippy: Towards the gapless assembly of complete vertebrate genomes .................... 1 Prof Kathy Belov: Saving the Tasmanian devil from extinction ......................................................... 1 Prof Peter Holland: Homeobox genes and animal evolution: from duplication to divergence ........ 2 Dr Hilary Burton: Genomics in healthcare: the challenges of complexity .......................................... 2 INVITED SPEAKERS ................................................................................................................................. 3 Vertebrate Genomics ........................................................................................................................... 3 Alex Cagan: Comparative genomics of animal domestication .......................................................... 3 Plant Genomics .................................................................................................................................... 4 Ksenia Krasileva: Evolution of plant Immune receptors ..................................................................... 4 Andrea Harper: Using Associative Transcriptomics to predict tolerance to ash dieback disease in European ash trees ............................................................................................................ -
A Tour of the Cell Overview
Unit 3: The Cell Name______________________ Chapter 6: A Tour of the Cell Overview 6.1 Biologists use microscopes and the tools of biochemistry to study cells The discovery and early study of cells progressed with the invention of microscopes in 1590 and their improvement in the 17th century. In a light microscope (LM), visible light passes through the specimen and then through glass lenses. ○ The lenses refract light so that the image is magnified into the eye or a camera. Microscopes vary in magnification, resolution, and contrast. ○ Magnification is the ratio of an object’s image to its real size. A light microscope can magnify effectively to about 1,000 times the real size of a specimen. ○ Resolution is a measure of image clarity. It is the minimum distance two points can be separated and still be distinguished as two separate points. The minimum resolution of an LM is about 200 nanometers (nm), the size of a small bacterium. ○ Contrast accentuates differences in parts of the sample. It can be improved by staining or labeling of cell components so they stand out. Although an LM can resolve individual cells, it cannot resolve much of the internal anatomy, especially the organelles, membrane-enclosed structures within eukaryotic cells. The size range of cells 1 To resolve smaller structures, scientists use an electron microscope (EM), which focuses a beam of electrons through the specimen or onto its surface. ○ Theoretically, the resolution of a modern EM could reach 0.002 nm, but the practical limit is closer to about 2 nm. Scanning electron microscopes (SEMs) are useful for studying the surface structure or topography of a specimen. -
A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
The LRRC8A:C Heteromeric Channel Is a Cgamp Transporter and the Dominant
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.13.948273; this version posted February 14, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. The LRRC8A:C Heteromeric Channel Is a cGAMP Transporter and the Dominant cGAMP Importer in Human Vasculature Cells Lauren J. Lahey1,2, Xianlan Wen3, Rachel E. Mardjuki2,4, Volker Böhnert2,5, Christopher Ritchie2,5, Jacqueline A. Carozza2,4, Gaelen T. Hess2,6, Merritt Maduke3, Michael C. Bassik2,6, and Lingyin Li2,5,7,* 1Biophysics Program, 2Stanford ChEM-H, 3Department of Molecular and Cellular Physiology, 4Department of Chemistry, 5Department of Biochemistry, 6Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305 USA. 7Lead Contact *Correspondence: [email protected] bioRxiv preprint doi: https://doi.org/10.1101/2020.02.13.948273; this version posted February 14, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. SUMMARY Extracellular 2'3'-cyclic-GMP-AMP (cGAMP) is an immunotransmitter secreted by cancer cells and taken up by host cells to activate the anti-cancer STING pathway. No cGAMP exporter has been identified, and SLC19A1, a recently identified cGAMP importer, does not account for the import actiVity in most cell types. Here, we identify the LRRC8A:C heteromeric channel, a volume-regulated anion channel (VRAC), as a cGAMP transporter. This channel mediates cGAMP import or export depending on the cGAMP chemical gradient. cGAMP influences anion influx through VRAC, indicating it is likely a direct substrate of the channel. -
Protein Export Via the Type III Secretion System of the Bacterial Flagellum
biomolecules Review Protein Export via the Type III Secretion System of the Bacterial Flagellum Manuel Halte and Marc Erhardt * Institute for Biology–Bacterial Physiology, Humboldt-Universität zu Berlin, Philippstr. 13, 10115 Berlin, Germany; [email protected] * Correspondence: [email protected] Abstract: The bacterial flagellum and the related virulence-associated injectisome system of pathogenic bacteria utilize a type III secretion system (T3SS) to export substrate proteins across the inner membrane in a proton motive force-dependent manner. The T3SS is composed of an export gate (FliPQR/FlhA/FlhB) located in the flagellar basal body and an associated soluble ATPase complex in the cytoplasm (FliHIJ). Here, we summarise recent insights into the structure, assembly and protein secretion mechanisms of the T3SS with a focus on energy transduction and protein transport across the cytoplasmic membrane. Keywords: bacterial flagellum; flagellar assembly; type III protein export; ATPase; proton motive force; secretion model 1. Introduction Flagella are complex rotary nanomachines embedded in the cell envelope of many Citation: Halte, M.; Erhardt, M. bacteria. In addition to functions in adhering to surfaces, flagella allow bacteria to move Protein Export via the Type III in their environment towards nutrients or to escape harmful molecules. They are present Secretion System of the Bacterial in both Gram-negative and Gram-positive bacteria, and are evolutionary related to the Flagellum. Biomolecules 2021, 11, 186. injectisome device, which various Gram-negative bacterial species use to inject effectors into https://doi.org/10.3390/ eukaryotic target cells [1]. Both the flagellum and injectisome are complex nanomachines biom11020186 and made of around 20 different proteins, ranging from a copy number of very few to several thousand [2]. -
A Study of Extracellular Space in Central Nervous Tissue by Freeze-Substitution
A STUDY OF EXTRACELLULAR SPACE IN CENTRAL NERVOUS TISSUE BY FREEZE-SUBSTITUTION A. VAN HARREVELD, M.D., JANE CROWELL, Ph.D., and S. K. MALHOTRA, D.Phil. From the Kerckhoff Laboratories of the Biological Sciences, California Institute of Technology, Pasadena, California ABSTRACT Downloaded from It was attempted to preserve the water distribution in central nervous tissue by rapid freezing followed by substitution fixation at low temperature. The vermis of the cerebellum of white mice was frozen by bringing it into contact with a polished silver mirror maintained at a temperature of about -207C. The tissue was subjected to substitution fixation in acetone containing 2 per cent Os0 4 at -85°C for 2 days, and then prepared for electron micros- copy by embedding in Maraglas, sectioning, and staining with lead citrate or uranyl www.jcb.org acetate and lead. Cerebellum frozen within 30 seconds of circulatory arrest was compared with cerebellum frozen after 8 minutes' asphyxiation. From impedance measurements under these conditions, it could be expected that in the former tissue the electrolyte and water distribution is similar to that in the normal, oxygenated cerebellum, whereas in the on August 22, 2006 asphyxiated tissue a transport of water and electrolytes into the intracellular compartment has taken place. Electron micrographs of tissue frozen shortly after circulatory arrest re- vealed the presence of an appreciable extracellular space between the axons of granular layer cells. Between glia, dendrites, and presynaptic endings the usual narrow clefts and even tight junctions were found. Also the synaptic cleft was of the usual width (250 to 300 A). -
Lysosome Trafficking Is Necessary for EGF-Driven Invasion and Is
Dykes et al. BMC Cancer (2017) 17:672 DOI 10.1186/s12885-017-3660-3 RESEARCH ARTICLE Open Access Lysosome trafficking is necessary for EGF- driven invasion and is regulated by p38 MAPK and Na+/H+ exchangers Samantha S. Dykes1,2,4, Joshua J. Steffan3* and James A. Cardelli1,2 Abstract Background: Tumor invasion through a basement membrane is one of the earliest steps in metastasis, and growth factors, such as Epidermal Growth Factor (EGF) and Hepatocyte Growth Factor (HGF), stimulate this process in a majority of solid tumors. Basement membrane breakdown is one of the hallmarks of invasion; therefore, tumor cells secrete a variety of proteases to aid in this process, including lysosomal proteases. Previous studies demonstrated that peripheral lysosome distribution coincides with the release of lysosomal cathepsins. Methods: Immunofluorescence microscopy, western blot, and 2D and 3D cell culture techniques were performed to evaluate the effects of EGF on lysosome trafficking and cell motility and invasion. Results: EGF-mediated lysosome trafficking, protease secretion, and invasion is regulated by the activity of p38 mitogen activated protein kinase (MAPK) and sodium hydrogen exchangers (NHEs). Interestingly, EGF stimulates anterograde lysosome trafficking through a different mechanism than previously reported for HGF, suggesting that there are redundant signaling pathways that control lysosome positioning and trafficking in tumor cells. Conclusions: These data suggest that EGF stimulation induces peripheral (anterograde) lysosome trafficking, which is critical for EGF-mediated invasion and protease release, through the activation of p38 MAPK and NHEs. Taken together, this report demonstrates that anterograde lysosome trafficking is necessary for EGF-mediated tumor invasion and begins to characterize the molecular mechanisms required for EGF-stimulated lysosome trafficking. -
Selective Transport of Neurotransmitters and Modulators by Distinct Volume-Regulated LRRC8 Anion Channels Darius Lutter1,2,3, Florian Ullrich1,2, Jennifer C
© 2017. Published by The Company of Biologists Ltd | Journal of Cell Science (2017) 130, 1122-1133 doi:10.1242/jcs.196253 RESEARCH ARTICLE Selective transport of neurotransmitters and modulators by distinct volume-regulated LRRC8 anion channels Darius Lutter1,2,3, Florian Ullrich1,2, Jennifer C. Lueck1,2,3, Stefan Kempa2 and Thomas J. Jentsch1,2,4,* ABSTRACT volume regulation (Jentsch, 2016; Nilius et al., 1997; Pedersen In response to swelling, mammalian cells release chloride and et al., 2016). This plasma membrane channel, which appears to be organic osmolytes through volume-regulated anion channels expressed in all cells, is normally closed but can be activated by cell swelling or other cellular signaling cascades. In most cells, VRAC (VRACs). VRACs are heteromers of LRRC8A and other LRRC8 − isoforms (LRRC8B to LRRC8E), which are co-expressed in HEK293 opening leads to an efflux of Cl , which, together with an efflux of + + and most other cells. The spectrum of VRAC substrates and its K through independent K channels, lowers the intracellular dependence on particular LRRC8 isoforms remains largely unknown. osmolarity and, by secondarily driving water efflux, results in We show that, besides the osmolytes taurine and myo-inositol, regulatory volume decrease. Cell swelling also stimulates an efflux ‘ ’ myo LRRC8 channels transport the neurotransmitters glutamate, of organic osmolytes such as -inositol, taurine and glutamate. aspartate and γ-aminobutyric acid (GABA) and the co-activator It was controversial whether this release occurs through VRAC or D-serine. HEK293 cells engineered to express defined subsets of through a distinct channel named VSOAC (for volume-sensitive LRRC8 isoforms were used to elucidate the subunit-dependence organic osmolyte/anion channel) (Jackson and Strange, 1993; of transport. -
Vracs Swallow Platinum Drugs
News & Views VRACs swallow platinum drugs Thomas Voets, Bernd Nilius & Rudi Vennekens Platinum-based drugs such as cisplatin react covalently with the N7 nitrogen in essential structural component of VRACs and carboplatin are on the WHO model list guanines (Galluzzi et al, 2012). This causes (Qiu et al, 2014; Voss et al, 2014). LRRC8 of essential medicines, as highly effective distortions in the DNA, which can provoke proteins form a small family of integral chemotherapeutic drugs for the treatment cell cycle arrest and ultimately programmed membrane proteins with four transmem- of various solid tumors. These drugs react cell death (Kelland, 2007; Galluzzi et al, brane helices and include five homologues with purine residues in DNA, thereby caus- 2012). However, before cisplatin and related (LRRC8A-E) in mammals and most other ing DNA damage, inhibition of cell division, drugs can exert their antiproliferative effects, chordates (Abascal & Zardoya, 2012). and eventually cell death. However, the they first need to be taken up by the targeted Current evidence indicates that functional mechanisms whereby platinum-based cells (Galluzzi et al, 2012). Cisplatin and VRAC channels are heteromultimers that drugs enter cancer cells remained poorly carboplatin are relatively polar, compared to contain the obligatory LRRC8A subunit understood. In this issue, Planells-Cases other classes of small-molecule (anticancer) supplemented with at least one of the other et al (2015) provide evidence that cells drugs. Consequently, their passive diffusion four isoforms (Voss et al, 2014). Based on take up cisplatin and carboplatin via through the plasma membrane is slow, and limited homology with pannexins, a hexam- volume-regulated anion channels (VRACs), other transport pathways, including trans- eric architecture has been proposed, but this more specifically VRACs composed of porters and channels, have been postulated. -
Reconstructions of Centriole Formation and Ciliogenesis in Mammalian Lungs
J. Cell Sci. 3, 207-230 (1968) 207 Printed in Great Britain RECONSTRUCTIONS OF CENTRIOLE FORMATION AND CILIOGENESIS IN MAMMALIAN LUNGS S. P. SOROKIN Department of Anatomy, Harvard Medical School, Boston, Massachusetts 02115, U.S.A. SUMMARY This study presents reconstructions of the processes of centriolar formation and ciliogenesis based on evidence found in electron micrographs of tissues and organ cultures obtained chiefly from the lungs of foetal rats. A few observations on living cultures supplement the major findings. In this material, centrioles are generated by two pathways. Those centrioles that are destined to participate in forming the achromatic figure, or to sprout transitory, rudimentary (primary) cilia, arise directly off the walls of pre-existing centrioles. In pulmonary cells of all types this direct pathway operates during interphase. The daughter centrioles are first recognizable as annular structures (procentrioles) which lengthen into cylinders through acropetal deposition of osmiophilic material in the procentriolar walls. Triplet fibres develop in these walls from singlet and doublet fibres that first appear near the procentriolar bases and thereafter extend apically. When little more than half grown, the daughter centrioles are released into the cyto- plasm, where they complete their maturation. A parent centriole usually produces one daughter at a time. Exceptionally, up to 8 have been observed to develop simultaneously about 1 parent centriole. Primary cilia arise from directly produced centrioles in differentiating pulmonary cells of all types throughout the foetal period. In the bronchial epithelium they appear before the time when the ciliated border is generated. Fairly late in foetal life, centrioles destined to become kinetosomes in ciliated cells of the epithelium become assembled from masses of fibrogranular material located in the apical cytoplasm.