Reconstructions of Centriole Formation and Ciliogenesis in Mammalian Lungs
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Cytoplasmic Organelles
CYTOPLASMIC ORGANELLES OBJECTIVES: After completing this exercise, you should be able to: 1. Recognize features of the cytoplasm in the light microscope. 2. Identify major cellular organelles in electron micrographs. 3. Provide general functions of cellular organelles. ASSIGNMENT FOR TODAY'S LABORATORY GLASS SLIDES - https://medmicroscope.uc.edu/ SL 181 (spinal cord) rough endoplasmic reticulum SL 108 (pancreas) rough endoplasmic reticulum SL 125 (inflammation) rough endoplasmic reticulum and Golgi apparatus ELECTRON MICROGRAPHS (Gray envelope) EM 3-6, 4-5, 12-1, 16 plasma membrane EM 1-3, 2-1, 2-2, 3-5, 4-1, 10-5, 14-3 rough endoplasmic reticulum EM 4-2, 10-6, 12-3, 13-7, 14-5 smooth endoplasmic reticulum EM 5-2 and 5-inset ribosomes EM 11-1 to 11-4 Golgi apparatus EM 6-10 to 6-13, 2-3 to 2-5 also 3-4, 1-4, 12-2 and 13-6 mitochondria EM 3, 4, 16 and 17 Magnification and Resolution POSTED ELECTRON MICROGRAPHS # 1 Organelles # 6 Organelles Lab 2 Posted EMs SUPPLEMENTAL MATERIAL: SUPPLEMENTARY ELECTRON MICROGRAPHS Rhodin, J. A.G., An Atlas of Histology Plasma membrane Fig. 2-2; 2-3 Rough ER Fig 2-26; 2-29; 2-30; 2-31; 2-32 Smooth ER Fig 2-33; 2-34; 2-35 Ribosomes Fig 2-27; 2-28; 2-30; 2-31; 2-32 Golgi apparatus Fig 2-36; 2-37; 2-38 Mitochondria Fig 2-39; 2-40; 2-41 In the last lab, you were introduced to cells and extracellular matrix, followed by a focus on the nucleus. -
A Tour of the Cell Overview
Unit 3: The Cell Name______________________ Chapter 6: A Tour of the Cell Overview 6.1 Biologists use microscopes and the tools of biochemistry to study cells The discovery and early study of cells progressed with the invention of microscopes in 1590 and their improvement in the 17th century. In a light microscope (LM), visible light passes through the specimen and then through glass lenses. ○ The lenses refract light so that the image is magnified into the eye or a camera. Microscopes vary in magnification, resolution, and contrast. ○ Magnification is the ratio of an object’s image to its real size. A light microscope can magnify effectively to about 1,000 times the real size of a specimen. ○ Resolution is a measure of image clarity. It is the minimum distance two points can be separated and still be distinguished as two separate points. The minimum resolution of an LM is about 200 nanometers (nm), the size of a small bacterium. ○ Contrast accentuates differences in parts of the sample. It can be improved by staining or labeling of cell components so they stand out. Although an LM can resolve individual cells, it cannot resolve much of the internal anatomy, especially the organelles, membrane-enclosed structures within eukaryotic cells. The size range of cells 1 To resolve smaller structures, scientists use an electron microscope (EM), which focuses a beam of electrons through the specimen or onto its surface. ○ Theoretically, the resolution of a modern EM could reach 0.002 nm, but the practical limit is closer to about 2 nm. Scanning electron microscopes (SEMs) are useful for studying the surface structure or topography of a specimen. -
Protein Export Via the Type III Secretion System of the Bacterial Flagellum
biomolecules Review Protein Export via the Type III Secretion System of the Bacterial Flagellum Manuel Halte and Marc Erhardt * Institute for Biology–Bacterial Physiology, Humboldt-Universität zu Berlin, Philippstr. 13, 10115 Berlin, Germany; [email protected] * Correspondence: [email protected] Abstract: The bacterial flagellum and the related virulence-associated injectisome system of pathogenic bacteria utilize a type III secretion system (T3SS) to export substrate proteins across the inner membrane in a proton motive force-dependent manner. The T3SS is composed of an export gate (FliPQR/FlhA/FlhB) located in the flagellar basal body and an associated soluble ATPase complex in the cytoplasm (FliHIJ). Here, we summarise recent insights into the structure, assembly and protein secretion mechanisms of the T3SS with a focus on energy transduction and protein transport across the cytoplasmic membrane. Keywords: bacterial flagellum; flagellar assembly; type III protein export; ATPase; proton motive force; secretion model 1. Introduction Flagella are complex rotary nanomachines embedded in the cell envelope of many Citation: Halte, M.; Erhardt, M. bacteria. In addition to functions in adhering to surfaces, flagella allow bacteria to move Protein Export via the Type III in their environment towards nutrients or to escape harmful molecules. They are present Secretion System of the Bacterial in both Gram-negative and Gram-positive bacteria, and are evolutionary related to the Flagellum. Biomolecules 2021, 11, 186. injectisome device, which various Gram-negative bacterial species use to inject effectors into https://doi.org/10.3390/ eukaryotic target cells [1]. Both the flagellum and injectisome are complex nanomachines biom11020186 and made of around 20 different proteins, ranging from a copy number of very few to several thousand [2]. -
A Study of Extracellular Space in Central Nervous Tissue by Freeze-Substitution
A STUDY OF EXTRACELLULAR SPACE IN CENTRAL NERVOUS TISSUE BY FREEZE-SUBSTITUTION A. VAN HARREVELD, M.D., JANE CROWELL, Ph.D., and S. K. MALHOTRA, D.Phil. From the Kerckhoff Laboratories of the Biological Sciences, California Institute of Technology, Pasadena, California ABSTRACT Downloaded from It was attempted to preserve the water distribution in central nervous tissue by rapid freezing followed by substitution fixation at low temperature. The vermis of the cerebellum of white mice was frozen by bringing it into contact with a polished silver mirror maintained at a temperature of about -207C. The tissue was subjected to substitution fixation in acetone containing 2 per cent Os0 4 at -85°C for 2 days, and then prepared for electron micros- copy by embedding in Maraglas, sectioning, and staining with lead citrate or uranyl www.jcb.org acetate and lead. Cerebellum frozen within 30 seconds of circulatory arrest was compared with cerebellum frozen after 8 minutes' asphyxiation. From impedance measurements under these conditions, it could be expected that in the former tissue the electrolyte and water distribution is similar to that in the normal, oxygenated cerebellum, whereas in the on August 22, 2006 asphyxiated tissue a transport of water and electrolytes into the intracellular compartment has taken place. Electron micrographs of tissue frozen shortly after circulatory arrest re- vealed the presence of an appreciable extracellular space between the axons of granular layer cells. Between glia, dendrites, and presynaptic endings the usual narrow clefts and even tight junctions were found. Also the synaptic cleft was of the usual width (250 to 300 A). -
Lysosome Trafficking Is Necessary for EGF-Driven Invasion and Is
Dykes et al. BMC Cancer (2017) 17:672 DOI 10.1186/s12885-017-3660-3 RESEARCH ARTICLE Open Access Lysosome trafficking is necessary for EGF- driven invasion and is regulated by p38 MAPK and Na+/H+ exchangers Samantha S. Dykes1,2,4, Joshua J. Steffan3* and James A. Cardelli1,2 Abstract Background: Tumor invasion through a basement membrane is one of the earliest steps in metastasis, and growth factors, such as Epidermal Growth Factor (EGF) and Hepatocyte Growth Factor (HGF), stimulate this process in a majority of solid tumors. Basement membrane breakdown is one of the hallmarks of invasion; therefore, tumor cells secrete a variety of proteases to aid in this process, including lysosomal proteases. Previous studies demonstrated that peripheral lysosome distribution coincides with the release of lysosomal cathepsins. Methods: Immunofluorescence microscopy, western blot, and 2D and 3D cell culture techniques were performed to evaluate the effects of EGF on lysosome trafficking and cell motility and invasion. Results: EGF-mediated lysosome trafficking, protease secretion, and invasion is regulated by the activity of p38 mitogen activated protein kinase (MAPK) and sodium hydrogen exchangers (NHEs). Interestingly, EGF stimulates anterograde lysosome trafficking through a different mechanism than previously reported for HGF, suggesting that there are redundant signaling pathways that control lysosome positioning and trafficking in tumor cells. Conclusions: These data suggest that EGF stimulation induces peripheral (anterograde) lysosome trafficking, which is critical for EGF-mediated invasion and protease release, through the activation of p38 MAPK and NHEs. Taken together, this report demonstrates that anterograde lysosome trafficking is necessary for EGF-mediated tumor invasion and begins to characterize the molecular mechanisms required for EGF-stimulated lysosome trafficking. -
Establishment of the Early Cilia Preassembly Protein Complex
Establishment of the early cilia preassembly protein PNAS PLUS complex during motile ciliogenesis Amjad Horania,1, Alessandro Ustioneb, Tao Huangc, Amy L. Firthd, Jiehong Panc, Sean P. Gunstenc, Jeffrey A. Haspelc, David W. Pistonb, and Steven L. Brodyc aDepartment of Pediatrics, Washington University School of Medicine, St. Louis, MO 63110; bDepartment of Cell Biology and Physiology, Washington University School of Medicine, St. Louis, MO 63110; cDepartment of Medicine, Washington University School of Medicine, St. Louis, MO 63110; and dDepartment of Medicine, University of Southern California, Keck School of Medicine, Los Angeles, CA 90033 Edited by Kathryn V. Anderson, Sloan Kettering Institute, New York, NY, and approved December 27, 2017 (received for review September 9, 2017) Motile cilia are characterized by dynein motor units, which preas- function of these proteins is unknown; however, missing dynein semble in the cytoplasm before trafficking into the cilia. Proteins motor complexes in the cilia of mutants and cytoplasmic locali- required for dynein preassembly were discovered by finding human zation (or absence in the cilia proteome) suggest a role in the mutations that result in absent ciliary motors, but little is known preassembly of dynein motor complexes. Studies in C. reinhardtii about their expression, function, or interactions. By monitoring show motor components in the cell body before transport to ciliogenesis in primary airway epithelial cells and MCIDAS-regulated flagella (22–25). However, the expression, interactions, and induced pluripotent stem cells, we uncovered two phases of expres- functions of preassembly proteins, as well as the steps required sion of preassembly proteins. An early phase, composed of HEATR2, for preassembly, are undefined. -
Intracellular Transport in Eukaryotes
Intracellular transport in eukaryotes Overview Compartmentalization and inner membranes enables eukaryotic cells • to be 1000-10000 times larger than prokaryotes • to isolate specialized chemical processes in specific parts of the cell • to produce “packages” (vesicles) of chemical components that can be shuttled around the cell actively Membrane-enclosed organelles take up ~50% of the volume of eukaryotic cells: • nucleus – genomic function • endoplasmic reticulum – synthesis of lipids; on the border with the cytosol, synthesis of proteins destined for many organelles and the plasma membrane • Golgi apparatus – modification, sorting, and packaging of proteins and lipids for specific intracellular destination (akin to a mail sort facility) • lysosomes – degradation • endosomes – sorting of endocytosed (engulfed) material by the cell • peroxisomes – oxidation of toxic species • mitochondria , chloroplasts – energy conversion Cells contain ͥͤ ͥͦ protein molecules that are constantly being synthesized and 10 Ǝ 10 degraded Proteins are synthesized in the cytosol , but not all proteins remain there and many must be transported to the appropriate compartment For comparison: transport by diffusion Even without active transport requiring free energy transduction, movement of molecules in the cell is rapid by diffusive motion © M. S. Shell 2009 1/11 last modified 10/27/2010 Consider a sea of molecules. Pinpoint one molecule and note its starting position at time 0. Due to thermal motion, the particle on average makes a random jump of length every units ͠ of time. The jump is random in the radial direction. This is called a random walk . Repeat this process for many jumps n and interrogate the final distance of the particle from its starting point ͦ ͠ We could imagine doing many such experiments. -
Membrane Structure in Mammalian Astrocytes: a Review of Freeze-Fracture Studies on Adult, Developing, Reactive and Cultured Astrocytes
y. exp. Bid. (1981), 95. 35~48 35 JVith 6 figures 'Printed in Great Britain MEMBRANE STRUCTURE IN MAMMALIAN ASTROCYTES: A REVIEW OF FREEZE-FRACTURE STUDIES ON ADULT, DEVELOPING, REACTIVE AND CULTURED ASTROCYTES BY DENNIS M. D. LANDIS Department of Neurology, Massachusetts General Hospital, Boston, MA. 02114 AND THOMAS S. REESE Section on Functional Neuroanatomy, National Institute of Neurological and Communicative Diseases and Stroke, National Institutes of Health, Bethesda, MD. 20014 SUMMARY The application of freeze-fracture techniques to studies of brain structure has led to the recognition of two unsuspected specializations of membrane structure, each distributed in a specific pattern across the surface of astro- cytes. 'Assemblies' (aggregates of uniform, small particles packed in orthogonal array into rectangular or square aggregates) are found to characterize astrocytic plasma membranes apposed to blood vessels or to the cerebrospinal fluid at the surface of the brain. These particle aggregates are much less densely packed in astrocytic processes in brain parenchyma. Assemblies are not fixation artifacts, have been shown to extend to the true outer surface of the membrane, are remarkably labile in the setting of anoxia, and are at least in part protein. The function of assemblies is unknown, but their positioning suggests that they may have a role in the transport of some material into or out of the blood and cerebrospinal fluid compartments. A second specialization of intramembrane particle distri- bution, the polygonal particle junction, links astrocytic processes at the surface of the brain, and also links proximal, large caliber astrocytic processes in brain parenchyma. The function of this membrane specialization also is unknown, but it may subserve a mechanical role. -
Ciliary Dyneins and Dynein Related Ciliopathies
cells Review Ciliary Dyneins and Dynein Related Ciliopathies Dinu Antony 1,2,3, Han G. Brunner 2,3 and Miriam Schmidts 1,2,3,* 1 Center for Pediatrics and Adolescent Medicine, University Hospital Freiburg, Freiburg University Faculty of Medicine, Mathildenstrasse 1, 79106 Freiburg, Germany; [email protected] 2 Genome Research Division, Human Genetics Department, Radboud University Medical Center, Geert Grooteplein Zuid 10, 6525 KL Nijmegen, The Netherlands; [email protected] 3 Radboud Institute for Molecular Life Sciences (RIMLS), Geert Grooteplein Zuid 10, 6525 KL Nijmegen, The Netherlands * Correspondence: [email protected]; Tel.: +49-761-44391; Fax: +49-761-44710 Abstract: Although ubiquitously present, the relevance of cilia for vertebrate development and health has long been underrated. However, the aberration or dysfunction of ciliary structures or components results in a large heterogeneous group of disorders in mammals, termed ciliopathies. The majority of human ciliopathy cases are caused by malfunction of the ciliary dynein motor activity, powering retrograde intraflagellar transport (enabled by the cytoplasmic dynein-2 complex) or axonemal movement (axonemal dynein complexes). Despite a partially shared evolutionary developmental path and shared ciliary localization, the cytoplasmic dynein-2 and axonemal dynein functions are markedly different: while cytoplasmic dynein-2 complex dysfunction results in an ultra-rare syndromal skeleto-renal phenotype with a high lethality, axonemal dynein dysfunction is associated with a motile cilia dysfunction disorder, primary ciliary dyskinesia (PCD) or Kartagener syndrome, causing recurrent airway infection, degenerative lung disease, laterality defects, and infertility. In this review, we provide an overview of ciliary dynein complex compositions, their functions, clinical disease hallmarks of ciliary dynein disorders, presumed underlying pathomechanisms, and novel Citation: Antony, D.; Brunner, H.G.; developments in the field. -
Putative Roles of Cilia in Polycystic Kidney Disease☆
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Biochimica et Biophysica Acta 1812 (2011) 1256–1262 Contents lists available at ScienceDirect Biochimica et Biophysica Acta journal homepage: www.elsevier.com/locate/bbadis Review Putative roles of cilia in polycystic kidney disease☆ Paul Winyard a, Dagan Jenkins b,⁎ a Nephro-Urology Unit, UCL Institute of Child Health, 30 Guilford St, London, WC1N 1EH, UK b Molecular Medicine Unit, UCL Institute of Child Health, 30 Guilford St, London, WC1N 1EH, UK article info abstract Article history: The last 10 years has witnessed an explosion in research into roles of cilia in cystic renal disease. Cilia are Received 26 November 2010 membrane-enclosed finger-like projections from the cell, usually on the apical surface or facing into a lumen, Received in revised form 18 April 2011 duct or airway. Ten years ago, the major recognised functions related to classical “9+2” cilia in the respiratory Accepted 29 April 2011 and reproductive tracts, where co-ordinated beating clears secretions and assists fertilisation respectively. Available online 8 May 2011 Primary cilia, which have a “9+0” arrangement lacking the central microtubules, were anatomical curiosities but several lines of evidence have implicated them in both true polycystic kidney disease and other cystic Keywords: Cilia renal conditions: ranging from the homology between Caenorhabditis elegans proteins expressed on sensory Development cilia to mammalian polycystic kidney disease (PKD) 1 and 2 proteins, through the discovery that orpk cystic Wnt mice have structurally abnormal cilia to numerous recent studies wherein expression of nearly all cyst- Hedgehog associated proteins has been reported in the cilia or its basal body. -
The Flagellum and Flagellar Pocket of Trypanosomatids
Molecular & Biochemical Parasitology 115 (2001) 1–17 www.parasitology-online.com. Reviews: Parasite cell Biology: 1 The flagellum and flagellar pocket of trypanosomatids Scott M. Landfear *, Marina Ignatushchenko Department of Molecular Microbiology and Immunology, Oregon Health Sciences Uni6ersity, Portland, OR 97201, USA Received 9 November 2000; received in revised form 26 January 2001; accepted 5 March 2001 Abstract The flagellum and flagellar pocket are distinctive organelles present among all of the trypanosomatid protozoa. Currently, recognized functions for these organelles include generation of motility for the flagellum and dedicated secretory and endocytic activities for the flagellar pocket. The flagellar and flagellar pocket membranes have long been recognized as morphologically separate domains that are component parts of the plasma membrane that surrounds the entire cell. The structural and functional specialization of these two membranes has now been underscored by the identification of multiple proteins that are targeted selectively to each of these domains, and non-membrane proteins have also been identified that are targeted to the internal lumina of these organelles. Investigations on the functions of these organelle-specific proteins should continue to shed light on the unique biological activities of the flagellum and flagellar pocket. In addition, work has begun on identifying signals or modifications of these proteins that direct their targeting to the correct subcellular location. Future endeavors should further refine our knowledge of targeting signals and begin to dissect the molecular machinery involved in transporting and retaining each polypeptide at its designated cellular address. © 2001 Elsevier Science B.V. All rights reserved. Keywords: Trypanosomatid protozoa; Flagellum; Flagellar Pocket; Organelle-specific proteins; Review 1. -
Transient Ciliogenesis Involving Bardet-Biedl Syndrome Proteins Is a Fundamental Characteristic of Adipogenic Differentiation
Transient ciliogenesis involving Bardet-Biedl syndrome proteins is a fundamental characteristic of adipogenic differentiation Vincent Mariona,1, Corinne Stoetzela, Dominique Schlichta, Nadia Messaddeqb, Michael Kochb, Elisabeth Floric, Jean Marc Dansea, Jean-Louis Mandelb,d, and He´ le` ne Dollfusa aLaboratoire Physiopathologie des Syndromes Rares He´re´ ditaires, AVENIR-Inserm, EA3949, Faculte´deMe´ decine de Strasbourg, Universite´Louis Pasteur, 11 rue Humann, 67085 Strasbourg, France; bInstitut de Ge´ne´ tique et de Biologie Mole´culaire et Cellulaire, Inserm U596, CNRS, UMR7104; Universite´Louis Pasteur, Strasbourg, Illkirch, F-67400 France; cService de Cytoge´ne´ tique, Hoˆpitaux Universitaires de Strasbourg, Avenue Molie`re, Strasbourg, France; and dChaire de Ge´ne´ tique Humaine, Colle`ge de France, Illkirch, F-67400 France Communicated by Pierre Chambon, Institut de Ge´ne´ tique et de Biologie Mole´culaire et Cellulaire, Illkirch-Cedex, France, December 10, 2008 (received for review September 4, 2008) Bardet-Biedl syndrome (BBS) is an inherited ciliopathy generally pocytes in a process described as adipogenesis (14). At this cross- associated with severe obesity, but the underlying mechanism road, several pathways antagonize each other: the antiadipogenic remains hypothetical and is generally proposed to be of neuroen- Wnt and Hh pathways are potent inhibitors of adipogenesis, whose docrine origin. In this study, we show that while the proliferating activities need to be repressed before the cells can undergo final preadipocytes or mature adipocytes are nonciliated in culture, a differentiation, whereas the peroxisome proliferator-activated re- typical primary cilium is present in differentiating preadipocytes. ceptor-␥ (PPAR␥) and CCAAT-enhancer-binding proteins (c/ This transient cilium carries receptors for Wnt and Hedgehog EBP␣,-) are potent pro-adipogenic factors (15–17).