Interactions Between Phytophthora Cactorum, Armillaria Gallica and Betula Pendula Roth
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Alnus Glutinosa
bioRxiv preprint doi: https://doi.org/10.1101/2019.12.13.875229; this version posted December 13, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Investigations into the declining health of alder (Alnus glutinosa) along the river Lagan in Belfast, including the first report of Phytophthora lacustris causing disease of Alnus in Northern Ireland Richard O Hanlon (1, 2)* Julia Wilson (2), Deborah Cox (1) (1) Agri-Food and Biosciences Institute, Belfast, BT9 5PX, Northern Ireland, UK. (2) Queen’s University Belfast, Northern Ireland, UK * [email protected] Additional key words: Plant health, Forest pathology, riparian, root and collar rot. Abstract Common alder (Alnus glutinosa) is an important tree species, especially in riparian and wet habitats. Alder is very common across Ireland and Northern Ireland, and provides a wide range of ecosystem services. Surveys along the river Lagan in Belfast, Northern Ireland led to the detection of several diseased Alnus trees. As it is known that Alnus suffers from a Phytophthora induced decline, this research set out to identify the presence and scale of the risk to Alnus health from Phytophthora and other closely related oomycetes. Sampling and a combination of morphological and molecular testing of symptomatic plant material and river baits identified the presence of several Phytophthora species, including Phytophthora lacustris. A survey of the tree vegetation along an 8.5 km stretch of the river revealed that of the 166 Alnus trees counted, 28 were severely defoliated/diseased and 9 were dead. -
Armillaria in Massachusetts Forests: Ecology, Species Distribution, and Population Structure, with an Emphasis on Mixed Oak Forests
University of Massachusetts Amherst ScholarWorks@UMass Amherst Open Access Dissertations 5-13-2011 Armillaria in Massachusetts Forests: Ecology, Species Distribution, and Population Structure, with an Emphasis on Mixed Oak Forests Nicholas Justin Brazee University of Massachusetts Amherst, [email protected] Follow this and additional works at: https://scholarworks.umass.edu/open_access_dissertations Part of the Plant Sciences Commons Recommended Citation Brazee, Nicholas Justin, "Armillaria in Massachusetts Forests: Ecology, Species Distribution, and Population Structure, with an Emphasis on Mixed Oak Forests" (2011). Open Access Dissertations. 402. https://scholarworks.umass.edu/open_access_dissertations/402 This Open Access Dissertation is brought to you for free and open access by ScholarWorks@UMass Amherst. It has been accepted for inclusion in Open Access Dissertations by an authorized administrator of ScholarWorks@UMass Amherst. For more information, please contact [email protected]. ARMILLARIA IN MASSACHUSETTS FORESTS: ECOLOGY, SPECIES DISTRIBUTION, AND POPULATION STRUCTURE, WITH AN EMPHASIS ON MIXED OAK FORESTS A Dissertation Presented by NICHOLAS JUSTIN BRAZEE Submitted to the Graduate School of the University of Massachusetts Amherst in partial fulfillment of the requirement for the degree of DOCTOR OF PHILOSOPHY May 2011 Plant, Soil, and Insect Sciences i © Copyright by Nicholas Justin Brazee 2011 All Rights Reserved ii ARMILLARIA IN MASSACHUSETTS FORESTS: ECOLOGY, SPECIES DISTRIBUTION, AND POPULATION STRUCTURE, -
Presidio Phytophthora Management Recommendations
2016 Presidio Phytophthora Management Recommendations Laura Sims Presidio Phytophthora Management Recommendations (modified) Author: Laura Sims Other Contributing Authors: Christa Conforti, Tom Gordon, Nina Larssen, and Meghan Steinharter Photograph Credits: Laura Sims, Janet Klein, Richard Cobb, Everett Hansen, Thomas Jung, Thomas Cech, and Amelie Rak Editors and Additional Contributors: Christa Conforti, Alison Forrestel, Alisa Shor, Lew Stringer, Sharon Farrell, Teri Thomas, John Doyle, and Kara Mirmelstein Acknowledgements: Thanks first to Matteo Garbelotto and the University of California, Berkeley Forest Pathology and Mycology Lab for providing a ‘forest pathology home’. Many thanks to the members of the Phytophthora huddle group for useful suggestions and feedback. Many thanks to the members of the Working Group for Phytophthoras in Native Habitats for insight into the issues of Phytophthora. Many thanks to Jennifer Parke, Ted Swiecki, Kathy Kosta, Cheryl Blomquist, Susan Frankel, and M. Garbelotto for guidance. I would like to acknowledge the BMP documents on Phytophthora that proceeded this one: the Nursery Industry Best Management Practices for Phytophthora ramorum to prevent the introduction or establishment in California nursery operations, and The Safe Procurement and Production Manual. 1 Title Page: Authors and Acknowledgements Table of Contents Page Title Page 1 Table of Contents 2 Executive Summary 5 Introduction to the Phytophthora Issue 7 Phytophthora Issues Around the World 7 Phytophthora Issues in California 11 Phytophthora -
The Good, the Bad and the Tasty: the Many Roles of Mushrooms
available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 85: 125–157. The good, the bad and the tasty: The many roles of mushrooms K.M.J. de Mattos-Shipley1,2, K.L. Ford1, F. Alberti1,3, A.M. Banks1,4, A.M. Bailey1, and G.D. Foster1* 1School of Biological Sciences, Life Sciences Building, University of Bristol, 24 Tyndall Avenue, Bristol, BS8 1TQ, UK; 2School of Chemistry, University of Bristol, Cantock's Close, Bristol, BS8 1TS, UK; 3School of Life Sciences and Department of Chemistry, University of Warwick, Gibbet Hill Road, Coventry, CV4 7AL, UK; 4School of Biology, Devonshire Building, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK *Correspondence: G.D. Foster, [email protected] Abstract: Fungi are often inconspicuous in nature and this means it is all too easy to overlook their importance. Often referred to as the “Forgotten Kingdom”, fungi are key components of life on this planet. The phylum Basidiomycota, considered to contain the most complex and evolutionarily advanced members of this Kingdom, includes some of the most iconic fungal species such as the gilled mushrooms, puffballs and bracket fungi. Basidiomycetes inhabit a wide range of ecological niches, carrying out vital ecosystem roles, particularly in carbon cycling and as symbiotic partners with a range of other organisms. Specifically in the context of human use, the basidiomycetes are a highly valuable food source and are increasingly medicinally important. In this review, seven main categories, or ‘roles’, for basidiomycetes have been suggested by the authors: as model species, edible species, toxic species, medicinal basidiomycetes, symbionts, decomposers and pathogens, and two species have been chosen as representatives of each category. -
Phylogeography and Host Range of Armillaria Gallica in Riparian Forests of the Northern Great Plains, USA
Received: 28 August 2020 | Revised: 7 November 2020 | Accepted: 18 November 2020 DOI: 10.1111/efp.12663 ORIGINAL ARTICLE Phylogeography and host range of Armillaria gallica in riparian forests of the northern Great Plains, USA Brandon C. Alveshere1 | Shawn McMurtrey2 | Patrick Bennett3 | Mee-Sook Kim4 | John W. Hanna5 | Ned B. Klopfenstein5 | James T. Blodgett6 | Jared M. LeBoldus2,7 1Department of Natural Resources and the Environment, University of Connecticut, Abstract Storrs, CT, USA Root disease pathogens, including Armillaria, are a leading cause of growth loss and 2 Department of Botany and Plant Pathology, tree mortality in forest ecosystems of North America. Armillaria spp. have a wide Oregon State University, Corvallis, OR, USA 3USDA Forest Service, Northern Region, host range and can cause significant reductions in tree growth that may lead to mor- Forest Health Protection, Missoula, MT, USA tality. DNA sequence comparisons and phylogenetic studies have allowed a better 4 USDA Forest Service, Pacific Northwest understanding of Armillaria spp. taxonomic diversity. Genetic sequencing has facili- Research Station, Corvallis, OR, USA tated the mapping of species distributions and host associations, providing insights 5USDA Forest Service, Rocky Mountain Research Station, Moscow, ID, USA into Armillaria ecology. These studies can help to inform forest management and are 6 USDA Forest Service, Rocky Mountain essential in the development of disease risk maps, leading to more effective man- Region, Forest Health Protection, Rapid City, SD, USA agement strategies for Armillaria root disease. Armillaria surveys were conducted on 7Department of Forest Engineering, publicly owned lands in North Dakota, South Dakota, and Nebraska, U.S.A. Surveyed Resources, and Management, Oregon State stands consisted of riparian forests ≥0.4 hectares in area. -
Journal of Agricultural Research Department of Agriculture
JOURNAL OF AGRICULTURAL RESEARCH DEPARTMENT OF AGRICULTURE VOL. V WASHINGTON, D. C, OCTOBER II, 1915 No. 2 PERENNIAL MYCELIUM IN SPECIES OF PERONOSPO- RACEAE RELATED TO PHYTOPHTHORA INFES- TANS By I. E. MELHUS, Pathologist, Cotton and Truck Disease Investigations, Bureau of Plant Industry INTRODUCTION Phytophthora infestans having been found to be perennial in the. Irish potato (Solanum tvherosum), the question naturally arose as to whether other species of Peronosporaceae survive the winter in the northern part of the United States in the mycelial stage. As shown in another paper (13),1 the mycelium in the mother tuber grows up the stem to the surface of the soil and causes an infection of the foliage which may result in an epidemic of late-blight. Very little is known about the perennial nature of the mycelium of Peronosporaceae. Only two species have been reported in America: Plasmopara pygmaea on Hepática acutiloba by Stewart (15) and Phytoph- thora cactorum on Panax quinquefolium by Rosenbaum (14). Six have been shown to be perennial in Europe: Peronospora schachtii on Beta vtUgaris and Peronospora dipsaci on Dipsacus follonum by Kühn (7, 8) ; Peronospora alsinearum on Stellaria media, Peronospora grisea on Veronica heder aefolia, Peronospora effusa on S pinada olerácea, and A triplex hor- tensis by Magnus (9); and Peronospora viiicola on Vitis vinifera by Istvanffi (5). Many of the hosts of this family are annuals, but some are biennials, or, like the Irish potato, are perennials. Where the host lives over the winter, it is interesting to know whether the mycelium of the fungus may also live over, especially where the infection has become systemic and the mycelium is present in the crown of the host plant. -
Phytophthora: a Guide to Molecular Analyses
Phytophthora: A guide to molecular analyses Kelly Ivors, Assoc. Professor Horticulture & Crop Science Cal Poly, San Luis Obispo Circa late 2002… Cal Poly Strawberry Center, 2016 Phytophthora… an old enemy Dozens of species detected in coastal California on: • avocado • asparagus • cauliflower (rare) • citrus • grape • pepper • raspberry • sage • Blightspinach and (rare)Dieback • strawberry • tomato • numerous ornamentals • and forest plants Root rot Phytophthora in ornamentals Hundreds of ornamental plants are susceptible. Incite root rot, crown rot, and foliar blights. Caused by a few dozen Phytophthora species in U.S. cinnamomi, cryptogea, citricola,citrophthora, cactorum, cambivora, drecshleri, foliorum, gonapodyides, heveae, hibernalis, nicotianae, palmivora, ramorum, syringae, tropicalis… plus many more. Phytophthora… an old enemy Phytophthora cinnamomi rootstock trial 1979 Phytophthora… an old enemy Phytophthora infestans Trial 1972 Phytophthora… an old enemy Phytophthora nicotianae Host resistance trial 1960s Phytophthora… an old enemy Phytophthora ornamental workshop 1970 Phytophthora… a new enemy Phytophthora ramorum Circa 1990s Phytophthora… a new enemy Phytophthora siskiyouensis 2007 (Foster City, CA) Blight and Dieback Root rot Phytophthora… a new enemy The more you look, the more you find… Extensive surveys have been conducted in historically underexplored ecosystems to determine the spread of invasive species in forest decline worldwide New records in 2007 collected by PDIC Host Common Name Fungus Record Itea virginica Sweetspire -
Armillaria the Genus Armillaria Armillaria in North Contains About 40 Species of America
2006 No. 3 The many facets of Armillaria The genus Armillaria Armillaria in North contains about 40 species of America. Fortunately, important wood-rot fungi which physical features do are widely distributed across the separate some of the world. Their basic behaviour is species, and the fairly similar, because all the species well documented invade plant roots and cause a geographical ranges of progressive white rot. For this the mushrooms help reason, all these fungi were at one to separate others time grouped into a single species, The classic Armillaria mellea; however, they Honey Mushroom, are now separated based on Armillaria mellea, morphology, physiology, turns out to be pathogenicity, and geographical limited mostly to distribution. eastern North Since so many species of America, so the Armillaria look alike, mycologists Honey Mushrooms we have “mated” Armillaria species in collect and eat in the lab. They grow two species, in Alberta are not a single Petri dish and observe the Armillaria mellea, resulting reaction once the two but one or two other expanding colonies meet in the species of Armillaria. middle of the dish. They discovered that some Honey Morphology Mushrooms would take to one Cap: 3-15 cm, convex another, while others turned up to broadly convex or Photo courtesy: Martin Osis their fungal noses at the idea of plane in age; the margin often pairing up. Thus, using the arched at maturity; dry or tacky; vaguely radially arranged. “biological species concept” (in color extremely variable, but Gills: Attached or slightly basic terms, if they cannot mate, typically honey yellow; smooth, or decurrrent, nearly distant; whitish, they belong to separate species), we with a few tiny, dark scales sometimes bruising or discolouring now define ten species of concentrated near the centre and darker. -
The Phytophthora Cactorum Genome Provides Insights Into The
www.nature.com/scientificreports Corrected: Author Correction OPEN The Phytophthora cactorum genome provides insights into the adaptation to host defense Received: 30 October 2017 Accepted: 12 April 2018 compounds and fungicides Published online: 25 April 2018 Min Yang1,2, Shengchang Duan1,3, Xinyue Mei1,2, Huichuan Huang 1,2, Wei Chen1,4, Yixiang Liu1,2, Cunwu Guo1,2, Ting Yang1,2, Wei Wei1,2, Xili Liu5, Xiahong He1,2, Yang Dong1,4 & Shusheng Zhu1,2 Phytophthora cactorum is a homothallic oomycete pathogen, which has a wide host range and high capability to adapt to host defense compounds and fungicides. Here we report the 121.5 Mb genome assembly of the P. cactorum using the third-generation single-molecule real-time (SMRT) sequencing technology. It is the second largest genome sequenced so far in the Phytophthora genera, which contains 27,981 protein-coding genes. Comparison with other Phytophthora genomes showed that P. cactorum had a closer relationship with P. parasitica, P. infestans and P. capsici. P. cactorum has similar gene families in the secondary metabolism and pathogenicity-related efector proteins compared with other oomycete species, but specifc gene families associated with detoxifcation enzymes and carbohydrate-active enzymes (CAZymes) underwent expansion in P. cactorum. P. cactorum had a higher utilization and detoxifcation ability against ginsenosides–a group of defense compounds from Panax notoginseng–compared with the narrow host pathogen P. sojae. The elevated expression levels of detoxifcation enzymes and hydrolase activity-associated genes after exposure to ginsenosides further supported that the high detoxifcation and utilization ability of P. cactorum play a crucial role in the rapid adaptability of the pathogen to host plant defense compounds and fungicides. -
Crown Canker of Dogwood: Phytophthora Cactorum Introduction Area
Plant Disease Diagnostic Clinic Plant Pathology and Plant‐Microbe Biology Section 334 Plant Science Building Ithaca, NY 14853‐5904 Crown Canker of Dogwood: Phytophthora cactorum Introduction area. If the disease is present, the inner bark, cambium, and sapwood show discoloration. Crown Canker, also known as Collar Rot of dogwood is caused by the pathogen Phytophthora Over a period of months to years, this killed area of cactorum. The disease causes injury to flowering bark becomes sunken, dries, and falls away leaving dogwood (Cornus florida) and may kill the affected the wood exposed. The canker is then visible and its tree or weaken the tree and make it more susceptible seasonal progress is not hard to see. As the tree to attack by other organisms. becomes weakened, it is more susceptible to attack by the dogwood borer and is more severely affected by Symptoms and Signs short, droughty periods during the summer. The first symptom that may be noticed is usually a Disease Cycle reduced number and size of leaves produced The affected dogwood may generally have an unhealthy Infection usually occurs through injuries caused look. The leaf color is lighter than normal during the during transplanting, or from lawn care (mowing summer and in late summer the leaves turn injuries), cultivation, etc. prematurely yellow or red and drop early. Affected trees in the later stages of the disease may produce an abnormally large number of flowers and fruits. Management Strategies During dry times in summer, diseased dogwoods are much more likely than healthy trees to have large Since infection usually occurs through injuries, the numbers of leaves curl or shrivel or to show wilting of first priority is to avoid wounding the crown region all foliage. -
Supplementary Information For
Supplementary Information for A trait-based understanding of wood decomposition by fungi Nicky Lustenhouwer, Daniel S. Maynard, Mark A. Bradford, Daniel L. Lindner, Brad Oberle, Amy E. Zanne & Thomas W. Crowther Corresponding author: Nicky Lustenhouwer Email: [email protected] This PDF file includes: Fig. S1 Tables S1 to S5 SI References www.pnas.org/cgi/doi/10.1073/pnas.1909166117 Phellinus robiniae [2] Phellinus hartigii [1] Phellinus gilvus [1] Mycoacia meridionalis [1] Armillaria gallica [8] Armillaria sinapina [1] Armillaria tabescens [2] Porodisculus pendulus [1] Schizophyllum commune [2] Phlebiopsis flavidoalba [2] Hyphodontia crustosa [1] Phlebia rufa [2] Merulius tremellosus [2] Hyphoderma setigerum [2] Laetiporus conifericola [1] Tyromyces chioneus [1] Pycnoporus sanguineus [1] Lentinus crinitus [1] Fomes fomentarius [1] Xylobolus subpileatus [1] 0.02 Fig. S1. Phylogeny of the 20 fungal species used in this study, with the number of unique isolates per species indicated in brackets. The phylogenetic tree was inferred based on large subunit region (LSU) sequences for each fungus (full details of the phylogenetic analysis in 1, 2). Table S1. All traits analyzed in this study, with variable numbers as presented in Fig. 3. The trait data have previously been described in (1), with the exception of decomposition rate. Nr Variable Description V1 Decomposition rate Mass loss over 122 days (% dry weight), geometric mean across 10,16, and 22 °C V2 Temperature niche minimum Lower bound of thermal niche width (°C) V3 Temperature niche -
Canker-Disease-Slideshow.Pdf
Marion Murray Utah State University IPM Program Pathogen (fungus or bacteria) grows in bark and cambium Localized necrosis Variable in disease severity Pruning stub Freeze injury Dead twig Narrow branch crotch Fresh pruning cut Fungal spores or bacteria spread by rain Concentric rings may form; or pathogen or branch dies Fruiting structures or bacterial ooze forms on existing canker Biggs & Grove, Leucostoma Canker of Stone Fruits Disease Cycle; APS Annual cankers Perennial Target cankers Perennial Diffuse cankers Fusarium canker on birch Pathogen is active for only one season, then dies Stressed or injured trees can get multiple cankers Little impact on tree growth Penn State Department of Plant Pathology & Environmental Microbiology Archives, Penn State University, Bugwood.org Nectria target canker Balanced interaction of fungus and host Pathogen grows when tree is dormant https://twitter.com/HereBeSpiders11 Cryphonectria parasitica, cause of chestnut blight Often opportunistic fungi that can survive as saprophyte Can become aggressive pathogens Host unable to respond or produce a callus wall Expands during the growing season George Hudler, Cornell University, Bugwood.org Sanitation – remove existing cankers Proper pruning practices Improve tree vigor trees stressed by drought or nutrient deficiencies more susceptible When pruning out cankers, remove the entire diseased area 4 - 12 inches below canker margin Failure to callus/heal = early warning of continued infection 50% Remove diseased limbs 4 - 12 inches below margin of canker Disinfect