A Review of Recent Phylogenetic Contributions
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The Mitochondrial Genomes of Palaeopteran Insects and Insights
www.nature.com/scientificreports OPEN The mitochondrial genomes of palaeopteran insects and insights into the early insect relationships Nan Song1*, Xinxin Li1, Xinming Yin1, Xinghao Li1, Jian Yin2 & Pengliang Pan2 Phylogenetic relationships of basal insects remain a matter of discussion. In particular, the relationships among Ephemeroptera, Odonata and Neoptera are the focus of debate. In this study, we used a next-generation sequencing approach to reconstruct new mitochondrial genomes (mitogenomes) from 18 species of basal insects, including six representatives of Ephemeroptera and 11 of Odonata, plus one species belonging to Zygentoma. We then compared the structures of the newly sequenced mitogenomes. A tRNA gene cluster of IMQM was found in three ephemeropteran species, which may serve as a potential synapomorphy for the family Heptageniidae. Combined with published insect mitogenome sequences, we constructed a data matrix with all 37 mitochondrial genes of 85 taxa, which had a sampling concentrating on the palaeopteran lineages. Phylogenetic analyses were performed based on various data coding schemes, using maximum likelihood and Bayesian inferences under diferent models of sequence evolution. Our results generally recovered Zygentoma as a monophyletic group, which formed a sister group to Pterygota. This confrmed the relatively primitive position of Zygentoma to Ephemeroptera, Odonata and Neoptera. Analyses using site-heterogeneous CAT-GTR model strongly supported the Palaeoptera clade, with the monophyletic Ephemeroptera being sister to the monophyletic Odonata. In addition, a sister group relationship between Palaeoptera and Neoptera was supported by the current mitogenomic data. Te acquisition of wings and of ability of fight contribute to the success of insects in the planet. -
Automated High Throughput Animal CO1 Metabarcode Classification
www.nature.com/scientificreports OPEN Automated high throughput animal CO1 metabarcode classifcation Teresita M. Porter 1,2 & Mehrdad Hajibabaei1 We introduce a method for assigning names to CO1 metabarcode sequences with confdence scores in Received: 16 November 2017 a rapid, high-throughput manner. We compiled nearly 1 million CO1 barcode sequences appropriate for Accepted: 1 February 2018 classifying arthropods and chordates. Compared to our previous Insecta classifer, the current classifer Published: xx xx xxxx has more than three times the taxonomic coverage, including outgroups, and is based on almost fve times as many reference sequences. Unlike other popular rDNA metabarcoding markers, we show that classifcation performance is similar across the length of the CO1 barcoding region. We show that the RDP classifer can make taxonomic assignments about 19 times faster than the popular top BLAST hit method and reduce the false positive rate from nearly 100% to 34%. This is especially important in large-scale biodiversity and biomonitoring studies where datasets can become very large and the taxonomic assignment problem is not trivial. We also show that reference databases are becoming more representative of current species diversity but that gaps still exist. We suggest that it would beneft the feld as a whole if all investigators involved in metabarocoding studies, through collaborations with taxonomic experts, also planned to barcode representatives of their local biota as a part of their projects. Ecological investigations, such as environmental biomonitoring, require the identifcation of individual spec- imens. Tis is normally done for each individual specimen by comparing suites of morphological characters with those described in taxonomic keys. -
André Nel Sixtieth Anniversary Festschrift
Palaeoentomology 002 (6): 534–555 ISSN 2624-2826 (print edition) https://www.mapress.com/j/pe/ PALAEOENTOMOLOGY PE Copyright © 2019 Magnolia Press Editorial ISSN 2624-2834 (online edition) https://doi.org/10.11646/palaeoentomology.2.6.1 http://zoobank.org/urn:lsid:zoobank.org:pub:25D35BD3-0C86-4BD6-B350-C98CA499A9B4 André Nel sixtieth anniversary Festschrift DANY AZAR1, 2, ROMAIN GARROUSTE3 & ANTONIO ARILLO4 1Lebanese University, Faculty of Sciences II, Department of Natural Sciences, P.O. Box: 26110217, Fanar, Matn, Lebanon. Email: [email protected] 2State Key Laboratory of Palaeobiology and Stratigraphy, Center for Excellence in Life and Paleoenvironment, Nanjing Institute of Geology and Palaeontology, Chinese Academy of Sciences, Nanjing 210008, China. 3Institut de Systématique, Évolution, Biodiversité, ISYEB-UMR 7205-CNRS, MNHN, UPMC, EPHE, Muséum national d’Histoire naturelle, Sorbonne Universités, 57 rue Cuvier, CP 50, Entomologie, F-75005, Paris, France. 4Departamento de Biodiversidad, Ecología y Evolución, Facultad de Biología, Universidad Complutense, Madrid, Spain. FIGURE 1. Portrait of André Nel. During the last “International Congress on Fossil Insects, mainly by our esteemed Russian colleagues, and where Arthropods and Amber” held this year in the Dominican several of our members in the IPS contributed in edited volumes honoring some of our great scientists. Republic, we unanimously agreed—in the International This issue is a Festschrift to celebrate the 60th Palaeoentomological Society (IPS)—to honor our great birthday of Professor André Nel (from the ‘Muséum colleagues who have given us and the science (and still) national d’Histoire naturelle’, Paris) and constitutes significant knowledge on the evolution of fossil insects a tribute to him for his great ongoing, prolific and his and terrestrial arthropods over the years. -
Is Ellipura Monophyletic? a Combined Analysis of Basal Hexapod
ARTICLE IN PRESS Organisms, Diversity & Evolution 4 (2004) 319–340 www.elsevier.de/ode Is Ellipura monophyletic? A combined analysis of basal hexapod relationships with emphasis on the origin of insects Gonzalo Giribeta,Ã, Gregory D.Edgecombe b, James M.Carpenter c, Cyrille A.D’Haese d, Ward C.Wheeler c aDepartment of Organismic and Evolutionary Biology, Museum of Comparative Zoology, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA bAustralian Museum, 6 College Street, Sydney, New South Wales 2010, Australia cDivision of Invertebrate Zoology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA dFRE 2695 CNRS, De´partement Syste´matique et Evolution, Muse´um National d’Histoire Naturelle, 45 rue Buffon, F-75005 Paris, France Received 27 February 2004; accepted 18 May 2004 Abstract Hexapoda includes 33 commonly recognized orders, most of them insects.Ongoing controversy concerns the grouping of Protura and Collembola as a taxon Ellipura, the monophyly of Diplura, a single or multiple origins of entognathy, and the monophyly or paraphyly of the silverfish (Lepidotrichidae and Zygentoma s.s.) with respect to other dicondylous insects.Here we analyze relationships among basal hexapod orders via a cladistic analysis of sequence data for five molecular markers and 189 morphological characters in a simultaneous analysis framework using myriapod and crustacean outgroups.Using a sensitivity analysis approach and testing for stability, the most congruent parameters resolve Tricholepidion as sister group to the remaining Dicondylia, whereas most suboptimal parameter sets group Tricholepidion with Zygentoma.Stable hypotheses include the monophyly of Diplura, and a sister group relationship between Diplura and Protura, contradicting the Ellipura hypothesis.Hexapod monophyly is contradicted by an alliance between Collembola, Crustacea and Ectognatha (i.e., exclusive of Diplura and Protura) in molecular and combined analyses. -
Psocodea: 'Psocoptera': Troctomorp
Zootaxa 3869 (2): 159–164 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2014 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3869.2.5 http://zoobank.org/urn:lsid:zoobank.org:pub:97F39EFB-42A5-49F1-B2E6-B2AEC24A8C09 A new genus and two new species, one extant and one fossil, in the family Troctopsocidae (Psocodea: ‘Psocoptera’: Troctomorpha: Amphientometae: Electrentomoidea) EDWARD L. MOCKFORD1 & ALFONSO N. GARCÍA ALDRETE2 1School of Biological Sciences, Illinois State University, Normal, Illinois 61790-4120, USA. E-mail: [email protected] 2Departamento de Zoología, Instituto de Biología, Universidad Nacional Autónoma de México, Apartado Postal 70-153, 04510, Méx- ico, D. F., MÉXICO. E-mail: [email protected] Abstract We describe a new genus, Troctopsocoides, in the family Troctopsocidae with two new species, T. erwini n. sp. (Madre de Dios, Peru) and T. gracilis n. sp., a fossil in amber from the Dominican Republic. We include a diagnosis of the family Troctopsocidae following a recent important change in its status and a key to the known genera of the family. Key words: new genus, new species, Peru, Dominican Republic, amber fossil Introduction The family Troctopsocidae is a small group of psocids known only from the American and Asian tropics. The family, originally recognized by Roesler (1940), who gave it the preoccupied name Plaumanniidae, was given its present name, with addition of several genera by Mockford (1967). Smithers (1972) recognized the set of included genera as constituting two subfamilies, Troctopsocinae and Protroctopsocinae, and, following the addition of several more genera (Lienhard 1988; Lienhard & Mockford 1997) Lienhard & Smithers (2002) raised these subfamilies to families. -
Arthropods of Elm Fork Preserve
Arthropods of Elm Fork Preserve Arthropods are characterized by having jointed limbs and exoskeletons. They include a diverse assortment of creatures: Insects, spiders, crustaceans (crayfish, crabs, pill bugs), centipedes and millipedes among others. Column Headings Scientific Name: The phenomenal diversity of arthropods, creates numerous difficulties in the determination of species. Positive identification is often achieved only by specialists using obscure monographs to ‘key out’ a species by examining microscopic differences in anatomy. For our purposes in this survey of the fauna, classification at a lower level of resolution still yields valuable information. For instance, knowing that ant lions belong to the Family, Myrmeleontidae, allows us to quickly look them up on the Internet and be confident we are not being fooled by a common name that may also apply to some other, unrelated something. With the Family name firmly in hand, we may explore the natural history of ant lions without needing to know exactly which species we are viewing. In some instances identification is only readily available at an even higher ranking such as Class. Millipedes are in the Class Diplopoda. There are many Orders (O) of millipedes and they are not easily differentiated so this entry is best left at the rank of Class. A great deal of taxonomic reorganization has been occurring lately with advances in DNA analysis pointing out underlying connections and differences that were previously unrealized. For this reason, all other rankings aside from Family, Genus and Species have been omitted from the interior of the tables since many of these ranks are in a state of flux. -
Insecta: Psocodea: 'Psocoptera'
Molecular systematics of the suborder Trogiomorpha (Insecta: Title Psocodea: 'Psocoptera') Author(s) Yoshizawa, Kazunori; Lienhard, Charles; Johnson, Kevin P. Citation Zoological Journal of the Linnean Society, 146(2): 287-299 Issue Date 2006-02 DOI Doc URL http://hdl.handle.net/2115/43134 The definitive version is available at www.blackwell- Right synergy.com Type article (author version) Additional Information File Information 2006zjls-1.pdf Instructions for use Hokkaido University Collection of Scholarly and Academic Papers : HUSCAP Blackwell Science, LtdOxford, UKZOJZoological Journal of the Linnean Society0024-4082The Lin- nean Society of London, 2006? 2006 146? •••• zoj_207.fm Original Article MOLECULAR SYSTEMATICS OF THE SUBORDER TROGIOMORPHA K. YOSHIZAWA ET AL. Zoological Journal of the Linnean Society, 2006, 146, ••–••. With 3 figures Molecular systematics of the suborder Trogiomorpha (Insecta: Psocodea: ‘Psocoptera’) KAZUNORI YOSHIZAWA1*, CHARLES LIENHARD2 and KEVIN P. JOHNSON3 1Systematic Entomology, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan 2Natural History Museum, c.p. 6434, CH-1211, Geneva 6, Switzerland 3Illinois Natural History Survey, 607 East Peabody Drive, Champaign, IL 61820, USA Received March 2005; accepted for publication July 2005 Phylogenetic relationships among extant families in the suborder Trogiomorpha (Insecta: Psocodea: ‘Psocoptera’) 1 were inferred from partial sequences of the nuclear 18S rRNA and Histone 3 and mitochondrial 16S rRNA genes. Analyses of these data produced trees that largely supported the traditional classification; however, monophyly of the infraorder Psocathropetae (= Psyllipsocidae + Prionoglarididae) was not recovered. Instead, the family Psyllipso- cidae was recovered as the sister taxon to the infraorder Atropetae (= Lepidopsocidae + Trogiidae + Psoquillidae), and the Prionoglarididae was recovered as sister to all other families in the suborder. -
Insects of Larose Forest (Excluding Lepidoptera and Odonates)
Insects of Larose Forest (Excluding Lepidoptera and Odonates) • Non-native species indicated by an asterisk* • Species in red are new for the region EPHEMEROPTERA Mayflies Baetidae Small Minnow Mayflies Baetidae sp. Small minnow mayfly Caenidae Small Squaregills Caenidae sp. Small squaregill Ephemerellidae Spiny Crawlers Ephemerellidae sp. Spiny crawler Heptageniiidae Flatheaded Mayflies Heptageniidae sp. Flatheaded mayfly Leptophlebiidae Pronggills Leptophlebiidae sp. Pronggill PLECOPTERA Stoneflies Perlodidae Perlodid Stoneflies Perlodid sp. Perlodid stonefly ORTHOPTERA Grasshoppers, Crickets and Katydids Gryllidae Crickets Gryllus pennsylvanicus Field cricket Oecanthus sp. Tree cricket Tettigoniidae Katydids Amblycorypha oblongifolia Angular-winged katydid Conocephalus nigropleurum Black-sided meadow katydid Microcentrum sp. Leaf katydid Scudderia sp. Bush katydid HEMIPTERA True Bugs Acanthosomatidae Parent Bugs Elasmostethus cruciatus Red-crossed stink bug Elasmucha lateralis Parent bug Alydidae Broad-headed Bugs Alydus sp. Broad-headed bug Protenor sp. Broad-headed bug Aphididae Aphids Aphis nerii Oleander aphid* Paraprociphilus tesselatus Woolly alder aphid Cicadidae Cicadas Tibicen sp. Cicada Cicadellidae Leafhoppers Cicadellidae sp. Leafhopper Coelidia olitoria Leafhopper Cuernia striata Leahopper Draeculacephala zeae Leafhopper Graphocephala coccinea Leafhopper Idiodonus kelmcottii Leafhopper Neokolla hieroglyphica Leafhopper 1 Penthimia americana Leafhopper Tylozygus bifidus Leafhopper Cercopidae Spittlebugs Aphrophora cribrata -
Pacific Insects Psocoptera of the Galapagos Islands
PACIFIC INSECTS Vol. 15, no. 1 20 May 1973 Organ of the program *'Zoogeography and Evolution of Pacific Insects.*' Published by Entomology Department, Bishop Museum, Honolulu, Hawaii, U.S.A. Editorial committee: J. L. Gressitt (editor), S. Asahina, R. G. Fennah, R. A. Harrison, T. C. Maa, F. J. Radovsky, C. W. Sabrosky. J. J. H. Szent-Ivany, J. van der Vecht, K. Yasumatsu and E. C. Zimmerman. Devoted to studies of insects and other terrestrial arthropods from the Pacific area, including eastern Asia, Australia and Antarctica. PSOCOPTERA OF THE GALAPAGOS ISLANDS By Ian W. B. Thornton1 and Anita K. T. Woo Abstract: The Psocopteran fauna of the Galapagos is reviewed comprehensively for the first time. Treated are 39 species, of which 18 are described as new. Numerous illustrations of the new species are presented. Distribution and faunal affinities of these psocopterans are discussed. INTRODUCTION The Galapagos Archipelago is situated on the equator about 960 km west of Ecuador. It consists of five large islands, which in decreasing order of their area are Albemarle, Indefatigable, Narborough, James and Chatham, eleven smaller islands and numerous islets and rocks. All the islands are volcanic and the volcanoes on some of them are still active. The latest eruption was reported on Narborough on May ll, 1968. Accord ing to Chubb (1933), Richardson (1933), Cox & Dalrymple (1966), and Wilson (1963), the Galapagos appear to be rather young as a whole and originated probably in the late Miocene (15 million years ago), with the southeastern islands older than the rest. Although the archipelago lies in the equatorial region, its climate is cool from June to December due to the Humboldt Current flowing through the archipelago from east to west as the South Equatorial Current. -
Hypothesis on Monochromatic Vision in Scorpionflies Questioned by New
www.nature.com/scientificreports OPEN Hypothesis on monochromatic vision in scorpionfies questioned by new transcriptomic data Received: 7 July 2017 Alexander Böhm 1, Karen Meusemann2,3,4, Bernhard Misof3 & Günther Pass1 Accepted: 12 June 2018 In the scorpionfy Panorpa, a recent study suggested monochromatic vision due to evidence of only a Published: xx xx xxxx single opsin found in transcriptome data. To reconsider this hypothesis, the present study investigates opsin expression using transcriptome data of 21 species including representatives of all major lineages of scorpionfies (Mecoptera) and of three families of their closest relatives, the feas (Siphonaptera). In most mecopteran species investigated, transcripts encode two opsins with predicted peak absorbances in the green, two in the blue, and one in the ultraviolet spectral region. Only in groups with reduced or absent ocelli, like Caurinus and Apteropanorpa, less than four visual opsin messenger RNAs have been identifed. In addition, we found a Rh7-like opsin in transcriptome data derived from larvae of the mecopteran Nannochorista, and in two fea species. Peropsin expression was observed in two mecopterans. In light of these new data, we question the hypothesis on monochromatic vision in the genus Panorpa. In a broader phylogenetic perspective, it is suggested that the common ancestor of the monophyletic taxon Antliophora (Diptera, Mecoptera and Siphonaptera) possessed the full set of visual opsins, a Rh7-like opsin, and in addition a pteropsin as well as a peropsin. In the course of evolution individual opsins were likely lost in several lineages of this clade. Colour vision has two prerequisites1,2: receptors with diferent spectral responses and a neural system that can process their output in a way that preserves colour information. -
Ancient Rapid Radiations of Insects: Challenges for Phylogenetic Analysis
ANRV330-EN53-23 ARI 2 November 2007 18:40 Ancient Rapid Radiations of Insects: Challenges for Phylogenetic Analysis James B. Whitfield1 and Karl M. Kjer2 1Department of Entomology, University of Illinois, Urbana, Illinois 61821; email: jwhitfi[email protected] 2Department of Ecology, Evolution and Natural Resources, Rutgers University, New Brunswick, New Jersey 08901; email: [email protected] Annu. Rev. Entomol. 2008. 53:449–72 Key Words First published online as a Review in Advance on diversification, molecular evolution, Palaeoptera, Orthopteroidea, September 17, 2007 fossils The Annual Review of Entomology is online at ento.annualreviews.org Abstract by UNIVERSITY OF ILLINOIS on 12/18/07. For personal use only. This article’s doi: Phylogenies of major groups of insects based on both morphological 10.1146/annurev.ento.53.103106.093304 and molecular data have sometimes been contentious, often lacking Copyright c 2008 by Annual Reviews. the data to distinguish between alternative views of relationships. Annu. Rev. Entomol. 2008.53:449-472. Downloaded from arjournals.annualreviews.org All rights reserved This paucity of data is often due to real biological and historical 0066-4170/08/0107-0449$20.00 causes, such as shortness of time spans between divergences for evo- lution to occur and long time spans after divergences for subsequent evolutionary changes to obscure the earlier ones. Another reason for difficulty in resolving some of the relationships using molecu- lar data is the limited spectrum of genes so far developed for phy- logeny estimation. For this latter issue, there is cause for current optimism owing to rapid increases in our knowledge of comparative genomics. -
Phylogeny of Endopterygote Insects, the Most Successful Lineage of Living Organisms*
REVIEW Eur. J. Entomol. 96: 237-253, 1999 ISSN 1210-5759 Phylogeny of endopterygote insects, the most successful lineage of living organisms* N iels P. KRISTENSEN Zoological Museum, University of Copenhagen, Universitetsparken 15, DK-2100 Copenhagen 0, Denmark; e-mail: [email protected] Key words. Insecta, Endopterygota, Holometabola, phylogeny, diversification modes, Megaloptera, Raphidioptera, Neuroptera, Coleóptera, Strepsiptera, Díptera, Mecoptera, Siphonaptera, Trichoptera, Lepidoptera, Hymenoptera Abstract. The monophyly of the Endopterygota is supported primarily by the specialized larva without external wing buds and with degradable eyes, as well as by the quiescence of the last immature (pupal) stage; a specialized morphology of the latter is not an en dopterygote groundplan trait. There is weak support for the basal endopterygote splitting event being between a Neuropterida + Co leóptera clade and a Mecopterida + Hymenoptera clade; a fully sclerotized sitophore plate in the adult is a newly recognized possible groundplan autapomorphy of the latter. The molecular evidence for a Strepsiptera + Díptera clade is differently interpreted by advo cates of parsimony and maximum likelihood analyses of sequence data, and the morphological evidence for the monophyly of this clade is ambiguous. The basal diversification patterns within the principal endopterygote clades (“orders”) are succinctly reviewed. The truly species-rich clades are almost consistently quite subordinate. The identification of “key innovations” promoting evolution