Safety Assessment of Red Algae-Derived Ingredients As Used in Cosmetics
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University of Oklahoma
UNIVERSITY OF OKLAHOMA GRADUATE COLLEGE MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION SUBMITTED TO THE GRADUATE FACULTY in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY By JOSHUA THOMAS COOPER Norman, Oklahoma 2017 MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION APPROVED FOR THE DEPARTMENT OF MICROBIOLOGY AND PLANT BIOLOGY BY ______________________________ Dr. Boris Wawrik, Chair ______________________________ Dr. J. Phil Gibson ______________________________ Dr. Anne K. Dunn ______________________________ Dr. John Paul Masly ______________________________ Dr. K. David Hambright ii © Copyright by JOSHUA THOMAS COOPER 2017 All Rights Reserved. iii Acknowledgments I would like to thank my two advisors Dr. Boris Wawrik and Dr. J. Phil Gibson for helping me become a better scientist and better educator. I would also like to thank my committee members Dr. Anne K. Dunn, Dr. K. David Hambright, and Dr. J.P. Masly for providing valuable inputs that lead me to carefully consider my research questions. I would also like to thank Dr. J.P. Masly for the opportunity to coauthor a book chapter on the speciation of diatoms. It is still such a privilege that you believed in me and my crazy diatom ideas to form a concise chapter in addition to learn your style of writing has been a benefit to my professional development. I’m also thankful for my first undergraduate research mentor, Dr. Miriam Steinitz-Kannan, now retired from Northern Kentucky University, who was the first to show the amazing wonders of pond scum. Who knew that studying diatoms and algae as an undergraduate would lead me all the way to a Ph.D. -
Evolutionary History and the Life Cycle of Seaweeds
Evolutionary history and the life cycle of seaweeds Evolution Technical and As discussed near the beginning of this book, the impact of algae on the global scientific details ecosystem is enormous. It is estimated that they are currently responsible for about 90% of the oxygen that is released into the atmosphere. Furthermore, their contribution to the physical conditions on Earth were vitally important in setting the stage for the evolution of higher organisms. The first signs of life on our planet date back to a time when it was still very young. Earth was formed about 4.5 billion years ago and it is thought that the earliest organisms had already appeared more than 3.8 billion years ago. During this period, the conditions on Earth were very different from those of today. A particular indication of the physical state of the planet was the nearly total absence of oxygen in the atmosphere, less than one part in ten billion. Life consisted of simple, unicellular organisms, the so-called prokaryotes, which most closely resemble present-day bacteria. The prokaryotes encom- pass two separate domains (or superkingdoms): the Bacteria and the Archaea. Y, ffThe evolution of microal- Earth is formed Present day gae and macroalgae on Earth. 4 3 2 1 0 The thick lines indicate times Blue-green microalgae during which there was a rapid ■ increase in the occurrence of ■ Brown algae these species. Macroalgae became prevalent about 500 ■ Red algae to 800 million years ago. ■ Green algae About 2.5 to 1.5 billion years ago, there was a noticeable change in the Earth’s atmosphere, as the amount of oxygen in it started to increase. -
Biology and Systematics of Heterokont and Haptophyte Algae1
American Journal of Botany 91(10): 1508±1522. 2004. BIOLOGY AND SYSTEMATICS OF HETEROKONT AND HAPTOPHYTE ALGAE1 ROBERT A. ANDERSEN Bigelow Laboratory for Ocean Sciences, P.O. Box 475, West Boothbay Harbor, Maine 04575 USA In this paper, I review what is currently known of phylogenetic relationships of heterokont and haptophyte algae. Heterokont algae are a monophyletic group that is classi®ed into 17 classes and represents a diverse group of marine, freshwater, and terrestrial algae. Classes are distinguished by morphology, chloroplast pigments, ultrastructural features, and gene sequence data. Electron microscopy and molecular biology have contributed signi®cantly to our understanding of their evolutionary relationships, but even today class relationships are poorly understood. Haptophyte algae are a second monophyletic group that consists of two classes of predominately marine phytoplankton. The closest relatives of the haptophytes are currently unknown, but recent evidence indicates they may be part of a large assemblage (chromalveolates) that includes heterokont algae and other stramenopiles, alveolates, and cryptophytes. Heter- okont and haptophyte algae are important primary producers in aquatic habitats, and they are probably the primary carbon source for petroleum products (crude oil, natural gas). Key words: chromalveolate; chromist; chromophyte; ¯agella; phylogeny; stramenopile; tree of life. Heterokont algae are a monophyletic group that includes all (Phaeophyceae) by Linnaeus (1753), and shortly thereafter, photosynthetic organisms with tripartite tubular hairs on the microscopic chrysophytes (currently 5 Oikomonas, Anthophy- mature ¯agellum (discussed later; also see Wetherbee et al., sa) were described by MuÈller (1773, 1786). The history of 1988, for de®nitions of mature and immature ¯agella), as well heterokont algae was recently discussed in detail (Andersen, as some nonphotosynthetic relatives and some that have sec- 2004), and four distinct periods were identi®ed. -
Elliott Bay Seawall Habitat Features -- Initial Monitoring Results for Nearshore Ecosystem
Western Washington University Western CEDAR Salish Sea Ecosystem Conference 2020 Salish Sea Ecosystem Conference Apr 21st, 9:00 AM - Apr 22nd, 4:45 PM Elliott Bay Seawall Habitat Features -- Initial Monitoring Results for Nearshore Ecosystem Merri Martz Anchor QEA, LLC, [email protected] Follow this and additional works at: https://cedar.wwu.edu/ssec Part of the Fresh Water Studies Commons, Marine Biology Commons, Natural Resources and Conservation Commons, and the Terrestrial and Aquatic Ecology Commons Martz, Merri, "Elliott Bay Seawall Habitat Features -- Initial Monitoring Results for Nearshore Ecosystem" (2020). Salish Sea Ecosystem Conference. 30. https://cedar.wwu.edu/ssec/2020ssec/allsessions/30 This Event is brought to you for free and open access by the Conferences and Events at Western CEDAR. It has been accepted for inclusion in Salish Sea Ecosystem Conference by an authorized administrator of Western CEDAR. For more information, please contact [email protected]. Elliott Bay Seawall Innovative Habitat Design: Merri Martz, Anchor QEA Jill Macik, Seattle Department of Transportation Jeff Bertram, Seattle Department of Transportation Calvin Douglas, Anchor QEA Initial Results of Monitoring the Nearshore Ecosystem Sarah Montgomery, Anchor QEA Nicole Stout, Anchor QEA OVERVIEW 2. RESULTS The Elliott Bay Seawall protects the downtown Vancouver increased between April, June, and August. Green string lettuce (Ulva linza), B R I T I S H C O L U M B I A , C A Invertebrate and Algal Attachment on the Textured Seawall Seattle urban waterfront from storm and seismic A total of 20 species or families of algae or invertebrates were recorded sea lettuce (Ulva sp.), black tar (Mastocarpus papillatus), and biofilm were forces. -
Enhancement of Xanthophyll Synthesis in Porphyra/Pyropia Species (Rhodophyta, Bangiales) by Controlled Abiotic Factors: a Systematic Review and Meta-Analysis
marine drugs Review Enhancement of Xanthophyll Synthesis in Porphyra/Pyropia Species (Rhodophyta, Bangiales) by Controlled Abiotic Factors: A Systematic Review and Meta-Analysis Florentina Piña 1,2,3,4 and Loretto Contreras-Porcia 1,2,3,4,* 1 Departamento de Ecología y Biodiversidad, Facultad de Ciencias de la Vida, Universidad Andres Bello, Santiago 8370251, Chile; fl[email protected] 2 Centro de Investigación Marina Quintay (CIMARQ), Facultad de Ciencias de la Vida, Universidad Andres Bello, Quintay 2531015, Chile 3 Center of Applied Ecology and Sustainability (CAPES), Santiago 8331150, Chile 4 Instituto Milenio en Socio-Ecología Costera (SECOS), Santiago 8370251, Chile * Correspondence: [email protected] Abstract: Red alga species belonging to the Porphyra and Pyropia genera (commonly known as Nori), which are widely consumed and commercialized due to their high nutritional value. These species have a carotenoid profile dominated by xanthophylls, mostly lutein and zeaxanthin, which have relevant benefits for human health. The effects of different abiotic factors on xanthophyll synthesis in these species have been scarcely studied, despite their health benefits. The objectives of this study were (i) to identify the abiotic factors that enhance the synthesis of xanthophylls in Porphyra/Pyropia species by conducting a systematic review and meta-analysis of the xanthophyll content found in the literature, and (ii) to recommend a culture method that would allow a significant accumulation of Citation: Piña, F.; Contreras-Porcia, these compounds in the biomass of these species. The results show that salinity significantly affected L. Enhancement of Xanthophyll the content of total carotenoids and led to higher values under hypersaline conditions (70,247.91 µg/g Synthesis in Porphyra/Pyropia Species dm at 55 psu). -
Seaweed Aquaculture in Washington State
Seaweed Aquaculture in Washington State Thomas Mumford Marine Agronomics, LLC Olympia, Washington [email protected] Outline of Presentation • What are seaweeds? • Seaweeds of Washington • Approaches to Seaweed Aquaculture • Uses/products • Overview of how to grow seaweeds • Where are we going in the future? • Resources WhatWhat are “seaweeds?Algae”? •Seaweed (a kind of alga) •Kelp (a kind of seaweed) Algae Seaweeds Kelp Rhodophyta, Phaeophyta, Chlorophyta •Red Seaweeds (Rhodophyta) •Pyropia, Chondrus, Mazzaella •Brown Seaweeds (Phaeophyta) •Kelp •Sargassum •Green Seaweeds (Chlorophyta) •Ulva Supergroups containing “Algae” Graham 2016, Fig 5.1 The Bounty of Washington • Over 600 species of seaweeds • One of the most diverse kelp floras in the world- 22 species Seaweed Uses =Ecosystem Functions -Primary Producers • Food Detritus Dissolved organic materials -Structuring Elements (biogenic habitats) • Kelp beds -Biodiversity Function • Seaweed species themselves • Other species in, on and around seaweeds Traditional Coast Salish Uses Food, tools, culture Fishing Line made from Nereocystis stipes 11/21/19 Herring-roe-on-kelp (Macrocystis) Slide 8 • Food - nori, kombu, wakame, others • Fodder – feed supplements, forage Economic • Fiber – alginate fiber, kelp baskets Seaweed Uses • Fertilizer and Soil Conditioners– seaweed meal (kelp, rockweeds) • Drugs – iodine, kainic and domoic acids • Chemicals – “kelp”, potash, iodine, acetone • Biochemicals – alginate, carrageenan, agar, agarose • Cosmetics – alginate, carrageenan • Biomass – for -
New Phylogenomic Analysis of the Enigmatic Phylum Telonemia Further Resolves the Eukaryote Tree of Life
bioRxiv preprint doi: https://doi.org/10.1101/403329; this version posted August 30, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. New phylogenomic analysis of the enigmatic phylum Telonemia further resolves the eukaryote tree of life Jürgen F. H. Strassert1, Mahwash Jamy1, Alexander P. Mylnikov2, Denis V. Tikhonenkov2, Fabien Burki1,* 1Department of Organismal Biology, Program in Systematic Biology, Uppsala University, Uppsala, Sweden 2Institute for Biology of Inland Waters, Russian Academy of Sciences, Borok, Yaroslavl Region, Russia *Corresponding author: E-mail: [email protected] Keywords: TSAR, Telonemia, phylogenomics, eukaryotes, tree of life, protists bioRxiv preprint doi: https://doi.org/10.1101/403329; this version posted August 30, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract The broad-scale tree of eukaryotes is constantly improving, but the evolutionary origin of several major groups remains unknown. Resolving the phylogenetic position of these ‘orphan’ groups is important, especially those that originated early in evolution, because they represent missing evolutionary links between established groups. Telonemia is one such orphan taxon for which little is known. The group is composed of molecularly diverse biflagellated protists, often prevalent although not abundant in aquatic environments. -
A REAPPRAISAL of PORPHYRA and BANGIA (BANGIOPHYCIDAE, RHODOPHYTA) in the NORTHEAST ATLANTIC BASED on the Rbcl–Rbcs INTERGENIC SPACER1
J. Phycol. 34, 1069±1074 (1998) A REAPPRAISAL OF PORPHYRA AND BANGIA (BANGIOPHYCIDAE, RHODOPHYTA) IN THE NORTHEAST ATLANTIC BASED ON THE rbcL±rbcS INTERGENIC SPACER1 Juliet Brodie 2 Faculty of Applied Sciences, Bath Spa University College, Newton Park, Newton St. Loe, Bath BA2 9BN, United Kingdom Paul K. Hayes, Gary L. Barker School of Biological Sciences, University of Bristol, Woodland Road, Bristol BS8 1UG, United Kingdom Linda M. Irvine Botany Department, The Natural History Museum, Cromwell Road, London SW7 5BD, United Kingdom and Inka Bartsch Biologische Anstalt Helgoland, Zentrale Hamburg, Notkestrasse 31, D22607 Hamburg, Germany ABSTRACT The red algal family Bangiaceae currently has two Sequence data of the rbcL±rbcS noncoding intergenic genera assigned to it, Porphyra and Bangia, but in spacer of the plastid genome for 47 specimens of Porphyra this paper we now have good evidence that the type and Bangia from the northeast Atlantic reveal that they species are congeneric. Species of Porphyra occur in fall into 11 distinct sequences: P. purpurea, P. dioica the intertidal and shallow subtidal zones in cool- to (includes a sample of P. ``ochotensis'' from Helgoland), warm-temperate regions of the world and at certain P. amplissima (includes P. thulaea and British records times of the year can be the dominant algae in some of P. ``miniata''), P. linearis, P. umbilicalis, P. ``min- shore regions. Some species are economically im- iata'', B. atropurpurea s.l. from Denmark and B. atro- portant, being harvested from the wild or grown purpurea s.l. from Wales, P. drachii, P. leucosticta (in- commercially as food; for example, laver and nori. -
Pyropia Orbicularis Sp. Nov. (Rhodophyta, Bangiaceae) Based
Pyropia orbicularis sp. nov. (Rhodophyta, Bangiaceae) based on a population previously known as Porphyra columbina from the central coast of Chile Maria-Eliana Ramirez, Loretto Contreras-Porcia, Marie-Laure Guillemin, Juliet Brodie, Catalina Valdivia, María Rosa Flores-Molina, Alejandra Núñez, Cristian Bulboa Contador, Carlos Lovazzano To cite this version: Maria-Eliana Ramirez, Loretto Contreras-Porcia, Marie-Laure Guillemin, Juliet Brodie, Catalina Val- divia, et al.. Pyropia orbicularis sp. nov. (Rhodophyta, Bangiaceae) based on a population previously known as Porphyra columbina from the central coast of Chile. Phytotaxa, Magnolia Press 2014, 158 (2), pp.133-153. hal-01138605 HAL Id: hal-01138605 https://hal.archives-ouvertes.fr/hal-01138605 Submitted on 17 Apr 2015 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. 1 Pyropia orbicularis sp. nov. (Rhodophyta, Bangiaceae) based on a 2 population previously known as Porphyra columbina from the central 3 coast of Chile 4 MARÍA ELIANA RAMÍREZ1, LORETTO CONTRERAS-PORCIA2,*, MARIE-LAURE 5 GUILLEMIN3,*, -
Genetic Tool Development in Marine Protists: Emerging Model Organisms for Experimental Cell Biology
RESOURCE https://doi.org/10.1038/s41592-020-0796-x Genetic tool development in marine protists: emerging model organisms for experimental cell biology Diverse microbial ecosystems underpin life in the sea. Among these microbes are many unicellular eukaryotes that span the diversity of the eukaryotic tree of life. However, genetic tractability has been limited to a few species, which do not represent eukaryotic diversity or environmentally relevant taxa. Here, we report on the development of genetic tools in a range of pro- tists primarily from marine environments. We present evidence for foreign DNA delivery and expression in 13 species never before transformed and for advancement of tools for eight other species, as well as potential reasons for why transformation of yet another 17 species tested was not achieved. Our resource in genetic manipulation will provide insights into the ancestral eukaryotic lifeforms, general eukaryote cell biology, protein diversification and the evolution of cellular pathways. he ocean represents the largest continuous planetary ecosys- Results tem, hosting an enormous variety of organisms, which include Overview of taxa in the EMS initiative. Taxa were selected from Tmicroscopic biota such as unicellular eukaryotes (protists). multiple eukaryotic supergroups1,7 to maximize the potential of cel- Despite their small size, protists play key roles in marine biogeo- lular biology and to evaluate the numerous unigenes with unknown chemical cycles and harbor tremendous evolutionary diversity1,2. functions found in marine protists (Fig. 1). Before the EMS initia- Notwithstanding their significance for understanding the evolution tive, reproducible transformation of marine protists was limited to of life on Earth and their role in marine food webs, as well as driv- only a few species such as Thalassiosira pseudonana, Phaeodactylum ing biogeochemical cycles to maintain habitability, little is known tricornutum and Ostreococcus tauri (Supplementary Table 1). -
Article PHYTOTAXA Copyright © 2012 Magnolia Press ISSN 1179-3163 (Online Edition)
Phytotaxa 54: 1–12 (2012) ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ Article PHYTOTAXA Copyright © 2012 Magnolia Press ISSN 1179-3163 (online edition) A new species of Pyropia (Rhodophyta, Bangiaceae), from the Pacific coast of Mexico, based on morphological and molecular evidence LUZ ELENA MATEO-CID1*, ANGELA CATALINA MENDOZA-GONZÁLEZ1, JHOANA DÍAZ- LARREA2, ABEL SENTÍES2, FRANCISCO F. PEDROCHE3 & JUAN DIEGO SÁNCHEZ HEREDIA4 1 Departamento de Botánica, Escuela Nacional de Ciencias Biológicas, IPN. Carpio y Plan de Ayala s/n. Mexico, D.F. 11340. 2 Departamento de Hidrobiología. Universidad Autónoma Metropolitana-Iztapalapa. A.P. 55-535, Mexico, D.F. 09340, Mexico. 3 Departamento de Ciencias Ambientales. Universidad Autónoma Metropolitana-Lerma, Mexico. 4 Facultad de Biología. Universidad Michoacana de San Nicolás de Hidalgo, Morelia, Michoacán, Mexico. * Corresponding author: E-mail: [email protected] Abstract Pyropia raulaguilarii sp. nov. is described from Michoacán, tropical Mexican Pacific, on basis of comparative morphology and nrSSU, rbcL sequence analysis. It is distinguished from other Pyropia species by the foliose and lanceolate gametophyte, a monoecious thallus and the zygotosporangia in packets of 2x2x4. The phylogenetic analysis showed that the two Pacific Mexican samples, from Caletilla and Carrizalillo (Michoacán), were almost identical and formed a distinctive and well supported clade segregated from other species of Pyropia from Brazil, USA and Mexico. The Mexican entity is morphologically and genetically distinct from other Pyropia species, suggesting that this species should be assigned to a new taxon. Key words: Bangiales, molecular phylogeny, nrSSU, rbcL, marine red algae. Introduction Species of Porphyra C.Agardh have few characters for distinguishing species, however, these characters alone have proved to be misleading based on the discovery, using molecular sequences, of many cryptic taxa among species with very similar morphologies (e.g. -
Polyploid Lineages in the Genus Porphyra Elena Varela-Álvarez 1, João Loureiro2, Cristina Paulino1 & Ester A
www.nature.com/scientificreports OPEN Polyploid lineages in the genus Porphyra Elena Varela-Álvarez 1, João Loureiro2, Cristina Paulino1 & Ester A. Serrão1 Whole genome duplication is now accepted as an important evolutionary force, but the genetic factors Received: 27 January 2017 and the life history implications afecting the existence and abundance of polyploid lineages within Accepted: 18 May 2018 species are still poorly known. Polyploidy has been mainly studied in plant model species in which the Published: xx xx xxxx sporophyte is the dominant phase in their life history. In this study, we address such questions in a novel system (Porphyra, red algae) where the gametophyte is the dominant phase in the life history. Three Porphyra species (P. dioica, P. umbilicalis, and P. linearis) were used in comparisons of ploidy levels, genome sizes and genetic diferentiation using fow cytometry and 11 microsatellite markers among putative polyploid lineages. Multiple ploidy levels and genome sizes were found in Porphyra species, representing diferent cell lines and comprising several cytotype combinations among the same and diferent individuals. In P. linearis, genetic diferentiation was found among three polyploid lineages: triploid, tetraploid and mixoploids, representing diferent evolutionary units. We conclude that the gametophytic phase (n) in Porphyra species is not haploid, contradicting previous theories. New hypotheses for the life histories of Porphyra species are discussed. Polyploidy, the increase in genome size by the acquisition of more than one set of chromosomes has been a key factor in eukaryote evolution. In fact, most fowering plants and vertebrates descend from polyploid ancestors1. In angiosperms, many species have been suggested to have polyploid ancestry2.