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Microvirga Tunisiensis Sp. Nov., a Root Nodule Symbiotic Bacterium Isolated
Systematic and Applied Microbiology 42 (2019) 126015 Contents lists available at ScienceDirect Systematic and Applied Microbiology jou rnal homepage: http://www.elsevier.com/locate/syapm Microvirga tunisiensis sp. nov., a root nodule symbiotic bacterium isolated from Lupinus micranthus and L. luteus grown in Northern Tunisia a,∗∗ a b a Abdelhakim Msaddak , Mokhtar Rejili , David Durán , Mohamed Mars , b,c b,c b,c b,c,d,∗ José Manuel Palacios , Tomás Ruiz-Argüeso , Luis Rey , Juan Imperial a Research Laboratory Biodiversity and Valorization of Arid Areas Bioresources (BVBAA) – Faculty of Sciences of Gabès, Erriadh, 6072, Tunisia b Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM) – Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus Montegancedo UPM, Pozuelo de Alarcón, Madrid, 28223, Spain c Departamento de Biotecnología-Biología Vegetal, Escuela Técnica Superior de Ingeniería Agronómica, Alimentaria y de Biosistemas, UPM, Madrid, 28040, Spain d Instituto de Ciencias Agrarias, CSIC, Madrid, 28006, Spain a r t i c l e i n f o a b s t r a c t T Article history: Three bacterial strains, LmiM8 , LmiE10 and LluTb3, isolated from nitrogen-fixing nodules of Lupinus Received 6 February 2019 micranthus (Lmi strains) and L. luteus (Llu strain) growing in Northern Tunisia were analysed using Received in revised form 6 August 2019 genetic, phenotypic and symbiotic approaches. Phylogenetic analyses based on rrs and concatenated Accepted 20 August 2019 gyrB and dnaK genes suggested that these Lupinus strains constitute a new Microvirga species with iden- tities ranging from 95 to 83% to its closest relatives Microvirga makkahensis, M. -
Isolation and Identification of Microvirga Thermotolerans HR1, A
microorganisms Article Isolation and Identification of Microvirga thermotolerans HR1, a Novel Thermo-Tolerant Bacterium, and Comparative Genomics among Microvirga Species Jiang Li 1,2, Ruyu Gao 2, Yun Chen 2, Dong Xue 2, Jiahui Han 2, Jin Wang 1,2, Qilin Dai 1, Min Lin 2, Xiubin Ke 2,* and Wei Zhang 2,* 1 School of Life Science and Engineering, Southwest University of Science and Technology, Mianyang 621010, Sichuan, China; [email protected] (J.L.); [email protected] (J.W.); [email protected] (Q.D.) 2 Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China; [email protected] (R.G.); [email protected] (Y.C.); [email protected] (D.X.); [email protected] (J.H.); [email protected] (M.L.) * Correspondence: [email protected] (X.K.); [email protected] (W.Z.) Received: 27 November 2019; Accepted: 9 January 2020; Published: 10 January 2020 Abstract: Members of the Microvirga genus are metabolically versatile and widely distributed in Nature. However, knowledge of the bacteria that belong to this genus is currently limited to biochemical characteristics. Herein, a novel thermo-tolerant bacterium named Microvirga thermotolerans HR1 was isolated and identified. Based on the 16S rRNA gene sequence analysis, the strain HR1 belonged to the genus Microvirga and was highly similar to Microvirga sp. 17 mud 1-3. The strain could grow at temperatures ranging from 15 to 50 ◦C with a growth optimum at 40 ◦C. It exhibited tolerance to pH range of 6.0–8.0 and salt concentrations up to 0.5% (w/v). It contained ubiquinone 10 as the predominant quinone and added group 8 as the main fatty acids. -
Genome Sequence of Microvirga Lupini Strain LUT6(T), a Novel Lupinus Alphaproteobacterial Microsymbiont from Texas
Binghamton University The Open Repository @ Binghamton (The ORB) Biological Sciences Faculty Scholarship Biological Sciences 2014 Genome sequence of Microvirga lupini strain LUT6(T), a novel Lupinus alphaproteobacterial microsymbiont from Texas Wayne Reeve Matthew Parker Binghamton University--SUNY Rui Tian Lynne Goodwin Hazuki Teshima See next page for additional authors Follow this and additional works at: https://orb.binghamton.edu/bio_fac Part of the Biology Commons Recommended Citation Reeve, Wayne; Parker, Matthew; Tian, Rui; Goodwin, Lynne; Teshima, Hazuki; Tapia, Roxanne; Han, Cliff; Han, James; Liolios, Konstantinos; Huntemann, Marcel; Pati, Amrita; Woyke, Tanja; Mavromatis, Konstantinos; Markowitz, Victor; Ivanova, Natalia; and Kyrpides, Nikos, "Genome sequence of Microvirga lupini strain LUT6(T), a novel Lupinus alphaproteobacterial microsymbiont from Texas" (2014). Biological Sciences Faculty Scholarship. 16. https://orb.binghamton.edu/bio_fac/16 This Article is brought to you for free and open access by the Biological Sciences at The Open Repository @ Binghamton (The ORB). It has been accepted for inclusion in Biological Sciences Faculty Scholarship by an authorized administrator of The Open Repository @ Binghamton (The ORB). For more information, please contact [email protected]. Authors Wayne Reeve, Matthew Parker, Rui Tian, Lynne Goodwin, Hazuki Teshima, Roxanne Tapia, Cliff Han, James Han, Konstantinos Liolios, Marcel Huntemann, Amrita Pati, Tanja Woyke, Konstantinos Mavromatis, Victor Markowitz, Natalia Ivanova, and -
Metaproteomics Characterization of the Alphaproteobacteria
Avian Pathology ISSN: 0307-9457 (Print) 1465-3338 (Online) Journal homepage: https://www.tandfonline.com/loi/cavp20 Metaproteomics characterization of the alphaproteobacteria microbiome in different developmental and feeding stages of the poultry red mite Dermanyssus gallinae (De Geer, 1778) José Francisco Lima-Barbero, Sandra Díaz-Sanchez, Olivier Sparagano, Robert D. Finn, José de la Fuente & Margarita Villar To cite this article: José Francisco Lima-Barbero, Sandra Díaz-Sanchez, Olivier Sparagano, Robert D. Finn, José de la Fuente & Margarita Villar (2019) Metaproteomics characterization of the alphaproteobacteria microbiome in different developmental and feeding stages of the poultry red mite Dermanyssusgallinae (De Geer, 1778), Avian Pathology, 48:sup1, S52-S59, DOI: 10.1080/03079457.2019.1635679 To link to this article: https://doi.org/10.1080/03079457.2019.1635679 © 2019 The Author(s). Published by Informa View supplementary material UK Limited, trading as Taylor & Francis Group Accepted author version posted online: 03 Submit your article to this journal Jul 2019. Published online: 02 Aug 2019. Article views: 694 View related articles View Crossmark data Citing articles: 3 View citing articles Full Terms & Conditions of access and use can be found at https://www.tandfonline.com/action/journalInformation?journalCode=cavp20 AVIAN PATHOLOGY 2019, VOL. 48, NO. S1, S52–S59 https://doi.org/10.1080/03079457.2019.1635679 ORIGINAL ARTICLE Metaproteomics characterization of the alphaproteobacteria microbiome in different developmental and feeding stages of the poultry red mite Dermanyssus gallinae (De Geer, 1778) José Francisco Lima-Barbero a,b, Sandra Díaz-Sanchez a, Olivier Sparagano c, Robert D. Finn d, José de la Fuente a,e and Margarita Villar a aSaBio. -
Microvirga Massiliensis
Microvirga massiliensis sp nov., the human commensal with the largest genome Aurelia Caputo, Jean-Christophe Lagier, Said Azza, Catherine Robert, Donia Mouelhi, Pierre-Edouard Fournier, Didier Raoult To cite this version: Aurelia Caputo, Jean-Christophe Lagier, Said Azza, Catherine Robert, Donia Mouelhi, et al.. Mi- crovirga massiliensis sp nov., the human commensal with the largest genome. MicrobiologyOpen, Wiley, 2016, 5 (2), pp.307-322. 10.1002/mbo3.329. hal-01459554 HAL Id: hal-01459554 https://hal.archives-ouvertes.fr/hal-01459554 Submitted on 10 Dec 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License ORIGINAL RESEARCH Microvirga massiliensis sp. nov., the human commensal with the largest genome Aurélia Caputo1, Jean-Christophe Lagier1, Saïd Azza1, Catherine Robert1, Donia Mouelhi1, Pierre-Edouard Fournier1 & Didier Raoult1,2 1Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes, CNRS, UMR 7278 – IRD 198, Faculté de médecine, Aix-Marseille Université, 27 Boulevard Jean Moulin, 13385 Marseille Cedex 05, France 2Special Infectious Agents Unit, King Fahd Medical Research Center, King Abdulaziz University, Jeddah, Saudi Arabia Keywords Abstract Culturomics, large genome, Microvirga T massiliensis, taxonogenomics Microvirga massiliensis sp. -
Diverse Bacteria Affiliated with the Genera Microvirga, Phyllobacterium
PLANT MICROBIOLOGY crossm Diverse Bacteria Affiliated with the Genera Microvirga, Phyllobacterium, and Bradyrhizobium Nodulate Lupinus micranthus Growing in Soils of Northern Tunisia Downloaded from Abdelhakim Msaddak,a David Durán,b Mokhtar Rejili,a Mohamed Mars,a Tomás Ruiz-Argüeso,c Juan Imperial,b,c José Palacios,b Luis Reyb Research Unit Biodiversity and Valorization of Arid Areas Bioresources (BVBAA), Faculty of Sciences of Gabès Erriadh, Zrig,Tunisiaa; Centro de Biotecnología y Genómica de Plantas (UPM-INIA), ETSI Agronómica, Alimentaria y de Biosistemas, Campus de Montegancedo, Universidad Politécnica de Madrid, Madrid, Spainb; CSIC, Madrid, Spainc http://aem.asm.org/ ABSTRACT The genetic diversity of bacterial populations nodulating Lupinus micran- Received 10 October 2016 Accepted 3 thus in five geographical sites from northern Tunisia was examined. Phylogenetic January 2017 analyses of 50 isolates based on partial sequences of recA and gyrB grouped strains Accepted manuscript posted online 6 into seven clusters, five of which belong to the genus Bradyrhizobium (28 isolates), January 2017 one to Phyllobacterium (2 isolates), and one, remarkably, to Microvirga (20 isolates). Citation Msaddak A, Durán D, Rejili M, Mars M, Ruiz-Argüeso T, Imperial J, Palacios J, Rey L. The largest Bradyrhizobium cluster (17 isolates) grouped with the B. lupini species, 2017. Diverse bacteria affiliated with the and the other five clusters were close to different recently defined Bradyrhizobium genera Microvirga, Phyllobacterium, and Bradyrhizobium nodulate Lupinus micranthus on March 2, 2017 by guest species. Isolates close to Microvirga were obtained from nodules of plants from growing in soils of northern Tunisia. Appl four of the five sites sampled. -
Le 23 Novembre 2017 Par Aurélia CAPUTO
AIX-MARSEILLE UNIVERSITE FACULTE DE MEDECINE DE MARSEILLE ECOLE DOCTORALE DES SCIENCES DE LA VIE ET DE LA SANTE T H È S E Présentée et publiquement soutenue à l'IHU – Méditerranée Infection Le 23 novembre 2017 Par Aurélia CAPUTO ANALYSE DU GENOME ET DU PAN-GENOME POUR CLASSIFIER LES BACTERIES EMERGENTES Pour obtenir le grade de Doctorat d’Aix-Marseille Université Mention Biologie - Spécialité Génomique et Bio-informatique Membres du Jury : Professeur Antoine ANDREMONT Rapporteur Professeur Raymond RUIMY Rapporteur Docteur Pierre PONTAROTTI Examinateur Professeur Didier RAOULT Directeur de thèse Unité de recherche sur les maladies infectieuses et tropicales émergentes, UM63, CNRS 7278, IRD 198, Inserm U1095 Avant-propos Le format de présentation de cette thèse correspond à une recommandation de la spécialité Maladies Infectieuses et Microbiologie, à l’intérieur du Master des Sciences de la Vie et de la Santé qui dépend de l’École Doctorale des Sciences de la Vie de Marseille. Le candidat est amené à respecter des règles qui lui sont imposées et qui comportent un format de thèse utilisé dans le Nord de l’Europe et qui permet un meilleur rangement que les thèses traditionnelles. Par ailleurs, les parties introductions et bibliographies sont remplacées par une revue envoyée dans un journal afin de permettre une évaluation extérieure de la qualité de la revue et de permettre à l’étudiant de commencer le plus tôt possible une bibliographie exhaustive sur le domaine de cette thèse. Par ailleurs, la thèse est présentée sur article publié, accepté ou soumis associé d’un bref commentaire donnant le sens général du travail. -
Universitá Di Bologna MICROBIAL ECOLOGY of BIOTECHNOLOGICAL PROCESSES
Alma Mater Studiorum – Universitá di Bologna Dottorato di Ricerca in Scienze Biochimiche e Biotecnologiche Ciclo XXVII Settore Concorsuale 03/D1 Settore Scientifico Disciplinare CHIM/11 MICROBIAL ECOLOGY OF BIOTECHNOLOGICAL PROCESSES Presentata da: Dott.ssa Serena Fraraccio Coordinatore Dottorato Relatore Chiar.mo Prof. Chiar.mo Prof. Fabio Fava Santi Mario Spampinato Correlatori Giulio Zanaroli, Ph.D. Assoc. Prof. Ondřej Uhlík, Ph.D. Esame finale anno 2015 Abstract The investigation of phylogenetic diversity and functionality of complex microbial communities in relation to changes in the environmental conditions represents a major challenge of microbial ecology research. Nowadays, particular attention is paid to microbial communities occurring at environmental sites contaminated by recalcitrant and toxic organic compounds. Extended research has evidenced that such communities evolve some metabolic abilities leading to the partial degradation or complete mineralization of the contaminants. Determination of such biodegradation potential can be the starting point for the development of cost effective biotechnological processes for the bioremediation of contaminated matrices. This work showed how metagenomics-based microbial ecology investigations supported the choice or the development of three different bioremediation strategies. First, PCR-DGGE and PCR-cloning approaches served the molecular characterization of microbial communities enriched through sequential development stages of an aerobic cometabolic process for the treatment of groundwater -
Description and Genome Analysis of Microvirga Antarctica Sp. Nov., a Novel Pink-Pigmented Psychrotolerant Bacterium Isolated from Antarctic Soil
Description and Genome Analysis of Microvirga Antarctica Sp. Nov., A Novel Pink-Pigmented Psychrotolerant Bacterium Isolated From Antarctic Soil Lin Zhu Key Laboratory of Molecular Medicine and Biotherapy, School of Life Science, Beijing Institute of Technology Weiwei Ping Key Laboratory of Molecular Medicine and Biotherapy, School of Life Science, Beijing Institute of Technology Siyue Zhang Key Laboratory of Molecular Medicine and Biotherapy, School of Life Science, Beijing Institute of Technology Ya Chen Key Laboratory of Molecular Medicine and Biotherapy, School of Life Science, Beijing Institute of Technology Ying Zhang Key Laboratory of Molecular Medicine and Biotherapy, School of Life Science, Beijing Institute of Technology Jianli Zhang ( [email protected] ) Key Laboratory of Molecular Medicine and Biotherapy, School of Life Science, Beijing Institute of Technology https://orcid.org/0000-0001-7340-6392 Research Article Keywords: Microvirga, Polyphasic taxonomy, psychrotolerant, ANI, genome analysis, functional enzymes Posted Date: May 19th, 2021 DOI: https://doi.org/10.21203/rs.3.rs-443907/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/16 Abstract During the investigation of exploring potential psychrotolerant species from Antarctica soil, a novel pink- pigmented bacterium designated strain 3D7T was isolated. Cells of the isolate were observed to be rod- shaped (0.7–0.9×1.0–2.2 µm), Gram-stain negative and non-motile. It was able to grow at 4–32 ℃, pH 7.0–10.0 and in the presence of 0–3 % (w/v) NaCl. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain 3D7T belongs to the genus Microvirga and was most closely related to ‘Microvirga brassicacearum’ CDVBN77T (98.3 %), Microvirga subterranea DSM 14364T (96.8 %), Microvirga guangxiensis 25BT (96.5 %) and Microvirga aerophila DSM 21344T (96.5 %). -
Bibliography
Bibliography Aa, K. and R.A. Olsen. 1996. The use of various substrates and substrate caulis Poindexter by a polyphasic analysis. Int. J. Syst. Evol. Microbiol. concentrations by a Hyphomicrobium sp. isolated from soil: effect on 51: 27–34. growth rate and growth yield. Microb. Ecol. 31: 67–76. Abram, D., J. Castro e Melo and D. Chou. 1974. Penetration of Bdellovibrio Aalen, R.B. and W.B. Gundersen. 1985. Polypeptides encoded by cryptic bacteriovorus into host cells. J. Bacteriol. 118: 663–680. plasmids from Neisseria gonorrhoeae. Plasmid 14: 209–216. Abramochkina, F.N., L.V. Bezrukova, A.V. Koshelev, V.F. Gal’chenko and Aamand, J., T. Ahl and E. Spieck. 1996. Monoclonal antibodies recog- M.V. Ivanov. 1987. Microbial methane oxidation in a fresh-water res- nizing nitrite oxidoreductase of Nitrobacter hamburgensis, N. winograd- ervoir. Mikrobiologiya 56: 464–471. skyi, and N. vulgaris. Appl. Environ. Microbiol. 62: 2352–2355. Achenbach, L.A., U. Michaelidou, R.A. Bruce, J. Fryman and J.D. Coates. Aarestrup, F.M., E.M. Nielsen, M. Madsen and J. Engberg. 1997. Anti- 2001. Dechloromonas agitata gen. nov., sp. nov. and Dechlorosoma suillum microbial susceptibility patterns of thermophilic Campylobacter spp. gen. nov., sp. nov., two novel environmentally dominant from humans, pigs, cattle, and broilers in Denmark. Antimicrob. (per)chlorate-reducing bacteria and their phylogenetic position. Int. Agents Chemother. 41: 2244–2250. J. Syst. Evol. Microbiol. 51: 527–533. Abadie, M. 1967. Formations intracytoplasmique du type “me´some” chez Achouak, W., R. Christen, M. Barakat, M.H. Martel and T. Heulin. 1999. Chondromyces crocatus Berkeley et Curtis. -
Appendix 1. New and Emended Taxa Described Since Publication of Volume One, Second Edition of the Systematics
188 THE REVISED ROAD MAP TO THE MANUAL Appendix 1. New and emended taxa described since publication of Volume One, Second Edition of the Systematics Acrocarpospora corrugata (Williams and Sharples 1976) Tamura et Basonyms and synonyms1 al. 2000a, 1170VP Bacillus thermodenitrificans (ex Klaushofer and Hollaus 1970) Man- Actinocorallia aurantiaca (Lavrova and Preobrazhenskaya 1975) achini et al. 2000, 1336VP Zhang et al. 2001, 381VP Blastomonas ursincola (Yurkov et al. 1997) Hiraishi et al. 2000a, VP 1117VP Actinocorallia glomerata (Itoh et al. 1996) Zhang et al. 2001, 381 Actinocorallia libanotica (Meyer 1981) Zhang et al. 2001, 381VP Cellulophaga uliginosa (ZoBell and Upham 1944) Bowman 2000, VP 1867VP Actinocorallia longicatena (Itoh et al. 1996) Zhang et al. 2001, 381 Dehalospirillum Scholz-Muramatsu et al. 2002, 1915VP (Effective Actinomadura viridilutea (Agre and Guzeva 1975) Zhang et al. VP publication: Scholz-Muramatsu et al., 1995) 2001, 381 Dehalospirillum multivorans Scholz-Muramatsu et al. 2002, 1915VP Agreia pratensis (Behrendt et al. 2002) Schumann et al. 2003, VP (Effective publication: Scholz-Muramatsu et al., 1995) 2043 Desulfotomaculum auripigmentum Newman et al. 2000, 1415VP (Ef- Alcanivorax jadensis (Bruns and Berthe-Corti 1999) Ferna´ndez- VP fective publication: Newman et al., 1997) Martı´nez et al. 2003, 337 Enterococcus porcinusVP Teixeira et al. 2001 pro synon. Enterococcus Alistipes putredinis (Weinberg et al. 1937) Rautio et al. 2003b, VP villorum Vancanneyt et al. 2001b, 1742VP De Graef et al., 2003 1701 (Effective publication: Rautio et al., 2003a) Hongia koreensis Lee et al. 2000d, 197VP Anaerococcus hydrogenalis (Ezaki et al. 1990) Ezaki et al. 2001, VP Mycobacterium bovis subsp. caprae (Aranaz et al. -
Evolution of Hiv and Its Vaccine
Journal of Current Perspectives in Applied Microbiology ISSN: 2278-1250 ©2012 Vol.1 (1) pp.1-5 JOURNAL OF CURRENT PERSPECTIVES IN APPLIED MICROBIOLOGY JULY 2012 VOLUME 1 NUMBER 1 ISSN: 2278-1250 CONTENTS S. Page Particulars No. No. 1 Viral Crusaders and Vaccine for HIV 3 P. Rajendran ………………………………………………………….. 2 Plant Growth Promoting Rhizobacteria for Biocontrol of 8 phytopathogens and Yield Enhancement of Phaseolus vulgaris L. Pankaj Kumar and R.C. Dubey…………..…………………………..... 3 Microbial Diversity in Coastal Mangrove Ecosystems 40 K. Kathiresan and R. Balagurunathan ………………………………... 4 Studies on Cadmium Biosorption by Cadmium Resistant 48 Bacterial Strains from Uppanar estuary, Cuddalore, Southeast Coast of India K. Mathivanan and R. Rajaram ……………………………………… 5 Isolation and Characterization of Plant Growth Promoting 54 Rhizobacteria (PGPR) from Vermistabilized Organic Substrates and their Effect on Plant Growth M. Prakash, V. Sathishkumar, T. Sivakami and N. Karmegam ……… 6 Isolation of Thermo Tolerant Escherichia coli from Drinking 63 Water of Namakkal District and Their Multiple Drug Resistance K. Srinivasan, C. Mohanasundari and K. Rasna .................................... 7 Isolation and Screening of Extremophilic Actinomycetes from 68 Alkaline Soil for the Biosynthesis of Silver Nanoparticles Vidhya and R. Balagurunathan ………………………………………. 8 BCL-2 Expression in Systemic Lupus Erythematosus Cases in 71 Chennai, Tamil Nadu M. Karthikeyan, P. Rajendran, S. Anandan, G. Ashok, S. Anbalagan, R. Nivedha,S. Melani Rajendran and Porkodi ………………………... 1 Journal of Current Perspectives in Applied Microbiology ISSN: 2278-1250 ©2012 Vol.1 (1) pp.1-5 July 2012, Volume 1, Number 1 ISSN: 2278-1250 Copy Right © JCPAM-2012 Vol. 1 No. 1 All rights reserved. No part of material protected by this copyright notice may be reproduced or utilized in any form or by any means, electronic or mechanical including photocopying, recording or by any information storage and retrieval system, without the prior written permission from the copyright owner.