Krls: a Stata Package for Kernel-Based Regularized Least
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Ordinary Least Squares 1 Ordinary Least Squares
Ordinary least squares 1 Ordinary least squares In statistics, ordinary least squares (OLS) or linear least squares is a method for estimating the unknown parameters in a linear regression model. This method minimizes the sum of squared vertical distances between the observed responses in the dataset and the responses predicted by the linear approximation. The resulting estimator can be expressed by a simple formula, especially in the case of a single regressor on the right-hand side. The OLS estimator is consistent when the regressors are exogenous and there is no Okun's law in macroeconomics states that in an economy the GDP growth should multicollinearity, and optimal in the class of depend linearly on the changes in the unemployment rate. Here the ordinary least squares method is used to construct the regression line describing this law. linear unbiased estimators when the errors are homoscedastic and serially uncorrelated. Under these conditions, the method of OLS provides minimum-variance mean-unbiased estimation when the errors have finite variances. Under the additional assumption that the errors be normally distributed, OLS is the maximum likelihood estimator. OLS is used in economics (econometrics) and electrical engineering (control theory and signal processing), among many areas of application. Linear model Suppose the data consists of n observations { y , x } . Each observation includes a scalar response y and a i i i vector of predictors (or regressors) x . In a linear regression model the response variable is a linear function of the i regressors: where β is a p×1 vector of unknown parameters; ε 's are unobserved scalar random variables (errors) which account i for the discrepancy between the actually observed responses y and the "predicted outcomes" x′ β; and ′ denotes i i matrix transpose, so that x′ β is the dot product between the vectors x and β. -
Least Squares Regression Principal Component Analysis a Supervised Dimensionality Reduction Method for Machine Learning in Scientific Applications
Universitat Politecnica` de Catalunya Bachelor's Degree in Engineering Physics Bachelor's Thesis Least Squares Regression Principal Component Analysis A supervised dimensionality reduction method for machine learning in scientific applications Supervisor: Author: Dr. Xin Yee H´ector Pascual Herrero Dr. Joan Torras June 29, 2020 Abstract Dimension reduction is an important technique in surrogate modeling and machine learning. In this thesis, we present three existing dimension reduction methods in de- tail and then we propose a novel supervised dimension reduction method, `Least Squares Regression Principal Component Analysis" (LSR-PCA), applicable to both classifica- tion and regression dimension reduction tasks. To show the efficacy of this method, we present different examples in visualization, classification and regression problems, com- paring it to state-of-the-art dimension reduction methods. Furthermore, we present the kernel version of LSR-PCA for problems where the input are correlated non-linearly. The examples demonstrated that LSR-PCA can be a competitive dimension reduction method. 1 Acknowledgements I would like to express my gratitude to my thesis supervisor, Professor Xin Yee. I would like to thank her for giving me this wonderful opportunity and for her guidance and support during all the passing of this semester, putting herself at my disposal during the difficult times of the COVID-19 situation. Without her, the making of this thesis would not have been possible. I would like to extend my thanks to Mr. Pere Balsells, for allowing students like me to conduct their thesis abroad, as well as to the Balsells Foundation for its help and support throughout the whole stay. -
Nonparametric Regression
Nonparametric Regression Statistical Machine Learning, Spring 2015 Ryan Tibshirani (with Larry Wasserman) 1 Introduction, and k-nearest-neighbors 1.1 Basic setup, random inputs Given a random pair (X; Y ) Rd R, recall that the function • 2 × f0(x) = E(Y X = x) j is called the regression function (of Y on X). The basic goal in nonparametric regression is ^ d to construct an estimate f of f0, from i.i.d. samples (x1; y1);::: (xn; yn) R R that have the same joint distribution as (X; Y ). We often call X the input, predictor,2 feature,× etc., and Y the output, outcome, response, etc. Importantly, in nonparametric regression we do not assume a certain parametric form for f0 Note for i.i.d. samples (x ; y );::: (x ; y ), we can always write • 1 1 n n yi = f0(xi) + i; i = 1; : : : n; where 1; : : : n are i.i.d. random errors, with mean zero. Therefore we can think about the sampling distribution as follows: (x1; 1);::: (xn; n) are i.i.d. draws from some common joint distribution, where E(i) = 0, and then y1; : : : yn are generated from the above model In addition, we will assume that each i is independent of xi. As discussed before, this is • actually quite a strong assumption, and you should think about it skeptically. We make this assumption for the sake of simplicity, and it should be noted that a good portion of theory that we cover (or at least, similar theory) also holds without the assumption of independence between the errors and the inputs 1.2 Basic setup, fixed inputs Another common setup in nonparametric regression is to directly assume a model • yi = f0(xi) + i; i = 1; : : : n; where now x1; : : : xn are fixed inputs, and 1; : : : are still i.i.d. -
An Analysis of Random Design Linear Regression
An Analysis of Random Design Linear Regression Daniel Hsu1,2, Sham M. Kakade2, and Tong Zhang1 1Department of Statistics, Rutgers University 2Department of Statistics, Wharton School, University of Pennsylvania Abstract The random design setting for linear regression concerns estimators based on a random sam- ple of covariate/response pairs. This work gives explicit bounds on the prediction error for the ordinary least squares estimator and the ridge regression estimator under mild assumptions on the covariate/response distributions. In particular, this work provides sharp results on the \out-of-sample" prediction error, as opposed to the \in-sample" (fixed design) error. Our anal- ysis also explicitly reveals the effect of noise vs. modeling errors. The approach reveals a close connection to the more traditional fixed design setting, and our methods make use of recent ad- vances in concentration inequalities (for vectors and matrices). We also describe an application of our results to fast least squares computations. 1 Introduction In the random design setting for linear regression, one is given pairs (X1;Y1);:::; (Xn;Yn) of co- variates and responses, sampled from a population, where each Xi are random vectors and Yi 2 R. These pairs are hypothesized to have the linear relationship > Yi = Xi β + i for some linear map β, where the i are noise terms. The goal of estimation in this setting is to find coefficients β^ based on these (Xi;Yi) pairs such that the expected prediction error on a new > 2 draw (X; Y ) from the population, measured as E[(X β^ − Y ) ], is as small as possible. -
Enabling Deeper Learning on Big Data for Materials Informatics Applications
www.nature.com/scientificreports OPEN Enabling deeper learning on big data for materials informatics applications Dipendra Jha1, Vishu Gupta1, Logan Ward2,3, Zijiang Yang1, Christopher Wolverton4, Ian Foster2,3, Wei‑keng Liao1, Alok Choudhary1 & Ankit Agrawal1* The application of machine learning (ML) techniques in materials science has attracted signifcant attention in recent years, due to their impressive ability to efciently extract data‑driven linkages from various input materials representations to their output properties. While the application of traditional ML techniques has become quite ubiquitous, there have been limited applications of more advanced deep learning (DL) techniques, primarily because big materials datasets are relatively rare. Given the demonstrated potential and advantages of DL and the increasing availability of big materials datasets, it is attractive to go for deeper neural networks in a bid to boost model performance, but in reality, it leads to performance degradation due to the vanishing gradient problem. In this paper, we address the question of how to enable deeper learning for cases where big materials data is available. Here, we present a general deep learning framework based on Individual Residual learning (IRNet) composed of very deep neural networks that can work with any vector‑ based materials representation as input to build accurate property prediction models. We fnd that the proposed IRNet models can not only successfully alleviate the vanishing gradient problem and enable deeper learning, but also lead to signifcantly (up to 47%) better model accuracy as compared to plain deep neural networks and traditional ML techniques for a given input materials representation in the presence of big data. -
ROBUST LINEAR LEAST SQUARES REGRESSION 3 Bias Term R(F ∗) R(F (Reg)) Has the Order D/N of the Estimation Term (See [3, 6, 10] and References− Within)
The Annals of Statistics 2011, Vol. 39, No. 5, 2766–2794 DOI: 10.1214/11-AOS918 c Institute of Mathematical Statistics, 2011 ROBUST LINEAR LEAST SQUARES REGRESSION By Jean-Yves Audibert and Olivier Catoni Universit´eParis-Est and CNRS/Ecole´ Normale Sup´erieure/INRIA and CNRS/Ecole´ Normale Sup´erieure and INRIA We consider the problem of robustly predicting as well as the best linear combination of d given functions in least squares regres- sion, and variants of this problem including constraints on the pa- rameters of the linear combination. For the ridge estimator and the ordinary least squares estimator, and their variants, we provide new risk bounds of order d/n without logarithmic factor unlike some stan- dard results, where n is the size of the training data. We also provide a new estimator with better deviations in the presence of heavy-tailed noise. It is based on truncating differences of losses in a min–max framework and satisfies a d/n risk bound both in expectation and in deviations. The key common surprising factor of these results is the absence of exponential moment condition on the output distribution while achieving exponential deviations. All risk bounds are obtained through a PAC-Bayesian analysis on truncated differences of losses. Experimental results strongly back up our truncated min–max esti- mator. 1. Introduction. Our statistical task. Let Z1 = (X1,Y1),...,Zn = (Xn,Yn) be n 2 pairs of input–output and assume that each pair has been independently≥ drawn from the same unknown distribution P . Let denote the input space and let the output space be the set of real numbersX R, so that P is a proba- bility distribution on the product space , R. -
Testing for Heteroskedastic Mixture of Ordinary Least 5
TESTING FOR HETEROSKEDASTIC MIXTURE OF ORDINARY LEAST 5. SQUARES ERRORS Chamil W SENARATHNE1 Wei JIANGUO2 Abstract There is no procedure available in the existing literature to test for heteroskedastic mixture of distributions of residuals drawn from ordinary least squares regressions. This is the first paper that designs a simple test procedure for detecting heteroskedastic mixture of ordinary least squares residuals. The assumption that residuals must be drawn from a homoscedastic mixture of distributions is tested in addition to detecting heteroskedasticity. The test procedure has been designed to account for mixture of distributions properties of the regression residuals when the regressor is drawn with reference to an active market. To retain efficiency of the test, an unbiased maximum likelihood estimator for the true (population) variance was drawn from a log-normal normal family. The results show that there are significant disagreements between the heteroskedasticity detection results of the two auxiliary regression models due to the effect of heteroskedastic mixture of residual distributions. Forecasting exercise shows that there is a significant difference between the two auxiliary regression models in market level regressions than non-market level regressions that supports the new model proposed. Monte Carlo simulation results show significant improvements in the model performance for finite samples with less size distortion. The findings of this study encourage future scholars explore possibility of testing heteroskedastic mixture effect of residuals drawn from multiple regressions and test heteroskedastic mixture in other developed and emerging markets under different market conditions (e.g. crisis) to see the generalisatbility of the model. It also encourages developing other types of tests such as F-test that also suits data generating process. -
Bayesian Uncertainty Analysis for a Regression Model Versus Application of GUM Supplement 1 to the Least-Squares Estimate
Home Search Collections Journals About Contact us My IOPscience Bayesian uncertainty analysis for a regression model versus application of GUM Supplement 1 to the least-squares estimate This content has been downloaded from IOPscience. Please scroll down to see the full text. 2011 Metrologia 48 233 (http://iopscience.iop.org/0026-1394/48/5/001) View the table of contents for this issue, or go to the journal homepage for more Download details: IP Address: 129.6.222.157 This content was downloaded on 20/02/2014 at 14:34 Please note that terms and conditions apply. IOP PUBLISHING METROLOGIA Metrologia 48 (2011) 233–240 doi:10.1088/0026-1394/48/5/001 Bayesian uncertainty analysis for a regression model versus application of GUM Supplement 1 to the least-squares estimate Clemens Elster1 and Blaza Toman2 1 Physikalisch-Technische Bundesanstalt, Abbestrasse 2-12, 10587 Berlin, Germany 2 Statistical Engineering Division, Information Technology Laboratory, National Institute of Standards and Technology, US Department of Commerce, Gaithersburg, MD, USA Received 7 March 2011, in final form 5 May 2011 Published 16 June 2011 Online at stacks.iop.org/Met/48/233 Abstract Application of least-squares as, for instance, in curve fitting is an important tool of data analysis in metrology. It is tempting to employ the supplement 1 to the GUM (GUM-S1) to evaluate the uncertainty associated with the resulting parameter estimates, although doing so is beyond the specified scope of GUM-S1. We compare the result of such a procedure with a Bayesian uncertainty analysis of the corresponding regression model. -
Chapter 1 Linear Regression with One Predictor Variable
54 Part I Simple Linear Regression 55 Chapter 1 Linear Regression With One Predictor Variable We look at linear regression models with one predictor variable. 1.1 Relations Between Variables Scatter plots of data are often modelled (approximated, simpli¯ed) by linear or non- linear functions. One \good" way to model the data is by using statistical relations. Whereas functions pass through every point in the scatter plot, statistical relations do not necessarily pass through every point but do follow the systematic pattern of the data. Exercise 1.1 (Functional Relation and Statistical Relation) 1. Linear Function Model: Reading Ability Versus Level of Illumination. Consider the following three linear functions used to model the reading ability versus level of illumination data. y = (14/6)x + 69 y = 1.88x + 74.1 y = 6x + 58 B(7,100) B(7,100) 100 100 B(7,100) 100 y y C(9.90) , C(9.90) , y C(9.90) y y , y ilit ilit b b ilit a 80 a 80 b a 80 g g A(3,76) A(3,76) g A(3,76) in in d d in d ea ea r r ea r 60 60 60 0 2 4 6 8 10 0 2 4 6 8 10 0 2 4 6 8 10 level of illumination, x level of illumination, x level of illumination, x (b) two point BC linear function model (c) least squares linear function model (a) two point AB linear function model Figure 1.1 (Linear Function Models of Reading Ability Versus Level of Illumination) 57 58 Chapter 1. -
Chapter 7 Least Squares Estimation
7-1 Least Squares Estimation Version 1.3 Chapter 7 Least Squares Estimation 7.1. Introduction Least squares is a time-honored estimation procedure, that was developed independently by Gauss (1795), Legendre (1805) and Adrain (1808) and published in the first decade of the nineteenth century. It is perhaps the most widely used technique in geophysical data analysis. Unlike maximum likelihood, which can be applied to any problem for which we know the general form of the joint pdf, in least squares the parameters to be estimated must arise in expressions for the means of the observations. When the parameters appear linearly in these expressions then the least squares estimation problem can be solved in closed form, and it is relatively straightforward to derive the statistical properties for the resulting parameter estimates. One very simple example which we will treat in some detail in order to illustrate the more general problem is that of fitting a straight line to a collection of pairs of observations (xi, yi) where i = 1, 2, . , n. We suppose that a reasonable model is of the form y = β0 + β1x, (1) and we need a mechanism for determining β0 and β1. This is of course just a special case of many more general problems including fitting a polynomial of order p, for which one would need to find p + 1 coefficients. The most commonly used method for finding a model is that of least squares estimation. It is supposed that x is an independent (or predictor) variable which is known exactly, while y is a dependent (or response) variable. -
Week 6: Linear Regression with Two Regressors
Week 6: Linear Regression with Two Regressors Brandon Stewart1 Princeton October 17, 19, 2016 1These slides are heavily influenced by Matt Blackwell, Adam Glynn and Jens Hainmueller. Stewart (Princeton) Week 6: Two Regressors October 17, 19, 2016 1 / 132 Where We've Been and Where We're Going... Last Week I mechanics of OLS with one variable I properties of OLS This Week I Monday: F adding a second variable F new mechanics I Wednesday: F omitted variable bias F multicollinearity F interactions Next Week I multiple regression Long Run I probability inference regression ! ! Questions? Stewart (Princeton) Week 6: Two Regressors October 17, 19, 2016 2 / 132 1 Two Examples 2 Adding a Binary Variable 3 Adding a Continuous Covariate 4 Once More With Feeling 5 OLS Mechanics and Partialing Out 6 Fun With Red and Blue 7 Omitted Variables 8 Multicollinearity 9 Dummy Variables 10 Interaction Terms 11 Polynomials 12 Conclusion 13 Fun With Interactions Stewart (Princeton) Week 6: Two Regressors October 17, 19, 2016 3 / 132 Why Do We Want More Than One Predictor? Summarize more information for descriptive inference Improve the fit and predictive power of our model Control for confounding factors for causal inference 2 Model non-linearities (e.g. Y = β0 + β1X + β2X ) Model interactive effects (e.g. Y = β0 + β1X + β2X2 + β3X1X2) Stewart (Princeton) Week 6: Two Regressors October 17, 19, 2016 4 / 132 Example 1: Cigarette Smokers and Pipe Smokers Stewart (Princeton) Week 6: Two Regressors October 17, 19, 2016 5 / 132 Example 1: Cigarette Smokers and Pipe Smokers Consider the following example from Cochran (1968). -
Fast Model-Fitting of Bayesian Variable Selection Regression Using The
Fast model-fitting of Bayesian variable selection regression using the iterative complex factorization algorithm Quan Zhou ∗,z and Yongtao Guan y,x Abstract. Bayesian variable selection regression (BVSR) is able to jointly ana- lyze genome-wide genetic datasets, but the slow computation via Markov chain Monte Carlo (MCMC) hampered its wide-spread usage. Here we present a novel iterative method to solve a special class of linear systems, which can increase the speed of the BVSR model-fitting tenfold. The iterative method hinges on the complex factorization of the sum of two matrices and the solution path resides in the complex domain (instead of the real domain). Compared to the Gauss-Seidel method, the complex factorization converges almost instantaneously and its error is several magnitude smaller than that of the Gauss-Seidel method. More impor- tantly, the error is always within the pre-specified precision while the Gauss-Seidel method is not. For large problems with thousands of covariates, the complex fac- torization is 10 { 100 times faster than either the Gauss-Seidel method or the direct method via the Cholesky decomposition. In BVSR, one needs to repetitively solve large penalized regression systems whose design matrices only change slightly be- tween adjacent MCMC steps. This slight change in design matrix enables the adaptation of the iterative complex factorization method. The computational in- novation will facilitate the wide-spread use of BVSR in reanalyzing genome-wide association datasets. Keywords: Cholesky decomposition, exchange algorithm, fastBVSR, Gauss-Seidel method, heritability. 1 Introduction Bayesian variable selection regression (BVSR) can jointly analyze genome-wide genetic data to produce the posterior probability of association for each covariate and estimate hyperparameters such as heritability and the number of covariates that have nonzero effects (Guan and Stephens, 2011).