International Journal of Molecular Sciences Article Substrate Specificity and Structural Modeling of Human Carboxypeptidase Z: A Unique Protease with a Frizzled-Like Domain Javier Garcia-Pardo 1 , Sebastian Tanco 1,2 , Maria C. Garcia-Guerrero 1, Sayani Dasgupta 3, Francesc Xavier Avilés 1 , Julia Lorenzo 1,* and Lloyd D. Fricker 3,* 1 Institut de Biotecnologia i Biomedicina and Departament de Bioquimica i Biologia Molecular, Universitat Autònoma de Barcelona, 08193 Bellaterra, Barcelona, Spain;
[email protected] (J.G.-P.);
[email protected] (S.T.);
[email protected] (M.C.G.-G.);
[email protected] (F.X.A.) 2 BiosenSource BV, B-1800 Vilvoorde, Belgium 3 Department of Molecular Pharmacology, Albert Einstein College of Medicine, Bronx, New York, NY 10461, USA;
[email protected] * Correspondence:
[email protected] (J.L.);
[email protected] (L.D.F.); Tel.: +34-93-5868936 (J.L.); +1-718-430-4225 (L.D.F.) Received: 24 October 2020; Accepted: 14 November 2020; Published: 18 November 2020 Abstract: Metallocarboxypeptidase Z (CPZ) is a secreted enzyme that is distinguished from all other members of the M14 metallocarboxypeptidase family by the presence of an N-terminal cysteine-rich Frizzled-like (Fz) domain that binds Wnt proteins. Here, we present a comprehensive analysis of the enzymatic properties and substrate specificity of human CPZ. To investigate the enzymatic properties, we employed dansylated peptide substrates. For substrate specificity profiling, we generated two different large peptide libraries and employed isotopic labeling and quantitative mass spectrometry to study the substrate preference of this enzyme. Our findings revealed that CPZ has a strict requirement for substrates with C-terminal Arg or Lys at the P10 position.