Centromere RNA Is a Key Component for the Assembly of Nucleoproteins at the Nucleolus and Centromere
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Evolution, Expression and Meiotic Behavior of Genes Involved in Chromosome Segregation of Monotremes
G C A T T A C G G C A T genes Article Evolution, Expression and Meiotic Behavior of Genes Involved in Chromosome Segregation of Monotremes Filip Pajpach , Linda Shearwin-Whyatt and Frank Grützner * School of Biological Sciences, The University of Adelaide, Adelaide, SA 5005, Australia; fi[email protected] (F.P.); [email protected] (L.S.-W.) * Correspondence: [email protected] Abstract: Chromosome segregation at mitosis and meiosis is a highly dynamic and tightly regulated process that involves a large number of components. Due to the fundamental nature of chromosome segregation, many genes involved in this process are evolutionarily highly conserved, but duplica- tions and functional diversification has occurred in various lineages. In order to better understand the evolution of genes involved in chromosome segregation in mammals, we analyzed some of the key components in the basal mammalian lineage of egg-laying mammals. The chromosome passenger complex is a multiprotein complex central to chromosome segregation during both mitosis and meio- sis. It consists of survivin, borealin, inner centromere protein, and Aurora kinase B or C. We confirm the absence of Aurora kinase C in marsupials and show its absence in both platypus and echidna, which supports the current model of the evolution of Aurora kinases. High expression of AURKBC, an ancestor of AURKB and AURKC present in monotremes, suggests that this gene is performing all necessary meiotic functions in monotremes. Other genes of the chromosome passenger complex complex are present and conserved in monotremes, suggesting that their function has been preserved Citation: Pajpach, F.; in mammals. -
Gene Knockdown of CENPA Reduces Sphere Forming Ability and Stemness of Glioblastoma Initiating Cells
Neuroepigenetics 7 (2016) 6–18 Contents lists available at ScienceDirect Neuroepigenetics journal homepage: www.elsevier.com/locate/nepig Gene knockdown of CENPA reduces sphere forming ability and stemness of glioblastoma initiating cells Jinan Behnan a,1, Zanina Grieg b,c,1, Mrinal Joel b,c, Ingunn Ramsness c, Biljana Stangeland a,b,⁎ a Department of Molecular Medicine, Institute of Basic Medical Sciences, The Medical Faculty, University of Oslo, Oslo, Norway b Norwegian Center for Stem Cell Research, Department of Immunology and Transfusion Medicine, Oslo University Hospital, Oslo, Norway c Vilhelm Magnus Laboratory for Neurosurgical Research, Institute for Surgical Research and Department of Neurosurgery, Oslo University Hospital, Oslo, Norway article info abstract Article history: CENPA is a centromere-associated variant of histone H3 implicated in numerous malignancies. However, the Received 20 May 2016 role of this protein in glioblastoma (GBM) has not been demonstrated. GBM is one of the most aggressive Received in revised form 23 July 2016 human cancers. GBM initiating cells (GICs), contained within these tumors are deemed to convey Accepted 2 August 2016 characteristics such as invasiveness and resistance to therapy. Therefore, there is a strong rationale for targeting these cells. We investigated the expression of CENPA and other centromeric proteins (CENPs) in Keywords: fi CENPA GICs, GBM and variety of other cell types and tissues. Bioinformatics analysis identi ed the gene signature: fi Centromeric proteins high_CENP(AEFNM)/low_CENP(BCTQ) whose expression correlated with signi cantly worse GBM patient Glioblastoma survival. GBM Knockdown of CENPA reduced sphere forming ability, proliferation and cell viability of GICs. We also Brain tumor detected significant reduction in the expression of stemness marker SOX2 and the proliferation marker Glioblastoma initiating cells and therapeutic Ki67. -
PDF Output of CLIC (Clustering by Inferred Co-Expression)
PDF Output of CLIC (clustering by inferred co-expression) Dataset: Num of genes in input gene set: 13 Total number of genes: 16493 CLIC PDF output has three sections: 1) Overview of Co-Expression Modules (CEMs) Heatmap shows pairwise correlations between all genes in the input query gene set. Red lines shows the partition of input genes into CEMs, ordered by CEM strength. Each row shows one gene, and the brightness of squares indicates its correlations with other genes. Gene symbols are shown at left side and on the top of the heatmap. 2) Details of each CEM and its expansion CEM+ Top panel shows the posterior selection probability (dataset weights) for top GEO series datasets. Bottom panel shows the CEM genes (blue rows) as well as expanded CEM+ genes (green rows). Each column is one GEO series dataset, sorted by their posterior probability of being selected. The brightness of squares indicates the gene's correlations with CEM genes in the corresponding dataset. CEM+ includes genes that co-express with CEM genes in high-weight datasets, measured by LLR score. 3) Details of each GEO series dataset and its expression profile: Top panel shows the detailed information (e.g. title, summary) for the GEO series dataset. Bottom panel shows the background distribution and the expression profile for CEM genes in this dataset. Overview of Co-Expression Modules (CEMs) with Dataset Weighting Scale of average Pearson correlations Num of Genes in Query Geneset: 13. Num of CEMs: 1. 0.0 0.2 0.4 0.6 0.8 1.0 Cenpk Cenph Cenpp Cenpu Cenpn Cenpq Cenpl Apitd1 -
4P Duplications
4p Duplications rarechromo.org Sources 4p duplications The information A 4p duplication is a rare chromosome disorder in which in this leaflet some of the material in one of the body’s 46 chromosomes comes from the is duplicated. Like most other chromosome disorders, this medical is associated to a variable extent with birth defects, literature and developmental delay and learning difficulties. from Unique’s 38 Chromosomes come in different sizes, each with a short members with (p) and a long (q) arm. They are numbered from largest to 4p duplications, smallest according to their size, from number 1 to number 15 of them with 22, in addition to the sex chromosomes, X and Y. We a simple have two copies of each of the chromosomes (23 pairs), duplication of 4p one inherited from our father and one inherited from our that did not mother. People with a chromosome 4p duplication have a involve any other repeat of some of the material on the short arm of one of chromosome, their chromosomes 4. The other chromosome 4 is the who were usual size. 4p duplications are sometimes also called surveyed in Trisomy 4p. 2004/5. Unique is This leaflet explains some of the features that are the same extremely or similar between people with a duplication of 4p. grateful to the People with different breakpoints have different features, families who but those with a duplication that covers at least two thirds took part in the of the uppermost part of the short arm share certain core survey. features. References When chromosomes are examined, they are stained with a dye that gives a characteristic pattern of dark and light The text bands. -
Phosphorylation of Threonine 3 on Histone H3 by Haspin Kinase Is Required for Meiosis I in Mouse Oocytes
ß 2014. Published by The Company of Biologists Ltd | Journal of Cell Science (2014) 127, 5066–5078 doi:10.1242/jcs.158840 RESEARCH ARTICLE Phosphorylation of threonine 3 on histone H3 by haspin kinase is required for meiosis I in mouse oocytes Alexandra L. Nguyen, Amanda S. Gentilello, Ahmed Z. Balboula*, Vibha Shrivastava, Jacob Ohring and Karen Schindler` ABSTRACT a lesser extent. However, it is not known whether haspin is required for meiosis in oocytes. To date, the only known haspin substrates Meiosis I (MI), the division that generates haploids, is prone to are threonine 3 of histone H3 (H3T3), serine 137 of macroH2A and errors that lead to aneuploidy in females. Haspin is a kinase that threonine 57 of CENP-T (Maiolica et al., 2014). Knockdown or phosphorylates histone H3 on threonine 3, thereby recruiting Aurora inhibition of haspin in mitotically dividing tissue culture cell kinase B (AURKB) and the chromosomal passenger complex lines reveal that phosphorylation of H3T3 is essential for the (CPC) to kinetochores to regulate mitosis. Haspin and AURKC, an alignment of chromosomes at the metaphase plate (Dai and AURKB homolog, are enriched in germ cells, yet their significance Higgins, 2005; Dai et al., 2005), regulation of chromosome in regulating MI is not fully understood. Using inhibitors and cohesion (Dai et al., 2009) and establishing a bipolar spindle (Dai overexpression approaches, we show a role for haspin during MI et al., 2009). In mitotic metaphase, phosphorylation of H3T3 is in mouse oocytes. Haspin-perturbed oocytes display abnormalities restricted to kinetochores, and this mark signals recruitment of the in chromosome morphology and alignment, improper kinetochore– chromosomal passenger complex (CPC) (Dai et al., 2005; Wang microtubule attachments at metaphase I and aneuploidy at et al., 2010; Yamagishi et al., 2010). -
A Single Amino Acid Change Converts Aurora-A Into Aurora-B-Like Kinase in Terms of Partner Specificity and Cellular Function
A single amino acid change converts Aurora-A into Aurora-B-like kinase in terms of partner specificity and cellular function Jingyan Fua, Minglei Biana, Junjun Liub, Qing Jianga, and Chuanmao Zhanga,1 aThe Education Ministry Key Laboratory of Cell Proliferation and Differentiation and the State Key Laboratory of Bio-membrane and Membrane Bio-engineering, College of Life Sciences, Peking University, Beijing 100871, China; and bDepartment of Biological Sciences, California State Polytechnic University, Pomona, CA 91768 Edited by Don W. Cleveland, University of California at San Diego, La Jolla, CA, and approved March 5, 2009 (received for review January 25, 2009) Aurora kinase-A and -B are key regulators of the cell cycle and the original Aurora-A localization at the spindle. Moreover, tumorigenesis. It has remained a mystery why these 2 Aurora Aurora-AG198N prevented the chromosome misalignment and kinases, although highly similar in protein sequence and structure, cell premature exit from mitosis caused by Aurora-B knock- are distinct in subcellular localization and function. Here, we report down, indicating functional substitution for Aurora-B in cell the striking finding that a single amino acid residue is responsible cycle regulation. for these differences. We replaced the Gly-198 of Aurora-A with the equivalent residue Asn-142 of Aurora-B and found that in HeLa Results cells, Aurora-AG198N was recruited to the inner centromere in Aurora-AG198N Colocalizes with Aurora-B at Centromere and Midzone. metaphase and the midzone in anaphase, reminiscent of the We fused the mutants Aurora-AG198N and Aurora-BN142G (Fig. Aurora-B localization. Moreover, Aurora-AG198N compensated for 1A) with GFP and transiently expressed them in HeLa cells the loss of Aurora-B in chromosome misalignment and cell prema- [supporting information (SI) Fig. -
Chromosome 13 Introduction Chromosome 13 (As Well As Chromosomes 14, 15, 21 and 22) Is an Acrocentric Chromosome. Short Arms Of
Chromosome 13 ©Chromosome Disorder Outreach Inc. (CDO) Technical genetic content provided by Dr. Iosif Lurie, M.D. Ph.D Medical Geneticist and CDO Medical Consultant/Advisor. Ideogram courtesy of the University of Washington Department of Pathology: ©1994 David Adler.hum_13.gif Introduction Chromosome 13 (as well as chromosomes 14, 15, 21 and 22) is an acrocentric chromosome. Short arms of acrocentric chromosomes do not contain any genes. All genes are located in the long arm. The length of the long arm is ~95 Mb. It is ~3.5% of the total human genome. Chromosome 13 is a gene poor area. There are only 600–700 genes within this chromosome. Structural abnormalities of the long arm of chromosome 13 are very common. There are at least 750 patients with deletions of different segments of the long arm (including patients with an associated imbalance for another chromosome). There are several syndromes associated with deletions of the long arm of chromosome 13. One of these syndromes is caused by deletions of 13q14 and neighboring areas. The main manifestation of this syndrome is retinoblastoma. Deletions of 13q32 and neighboring areas cause multiple defects of the brain, eye, heart, kidney, genitalia and extremities. The syndrome caused by this deletion is well known since the 1970’s. Distal deletions of 13q33q34 usually do not produce serious malformations. Deletions of the large area between 13q21 and 13q31 do not produce any stabile and well–recognized syndromes. Deletions of Chromosome 13 Chromosome 13 (as well as chromosomes 14, 15, 21 and 22) belongs to the group of acrocentric chromosomes. -
Bub1 Is Essential for Assembly of the Functional Inner Centromere
JCB: ARTICLE Bub1 is essential for assembly of the functional inner centromere Yekaterina Boyarchuk,1,2 Adrian Salic,3 Mary Dasso,1 and Alexei Arnaoutov1 1Laboratory of Gene Regulation and Development, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892 2Institute of Cytology, Russian Academy of Sciences, St. Petersburg, 199004, Russia 3Department of Cell Biology, Harvard Medical School, Boston, MA 02115 uring mitosis, the inner centromeric region (ICR) Depletion of Bub1 from Xenopus laevis egg extract or recruits protein complexes that regulate sister from HeLa cells resulted in both destabilization and dis- D chromatid cohesion, monitor tension, and modu- placement of chromosomal passenger complex (CPC) from late microtubule attachment. Biochemical pathways that the ICR. Moreover, soluble Bub1 controls the binding of govern formation of the inner centromere remain elusive. Sgo to chromatin, whereas the CPC restricts loading of The kinetochore protein Bub1 was shown to promote Sgo specifi cally onto centromeres. We further provide evi- assembly of the outer kinetochore components, such dence that Bub1 kinase activity is pivotal for recruitment of as BubR1 and CENP-F, on centromeres. Bub1 was also all of these components. Together, our fi ndings demon- implicated in targeting of Shugoshin (Sgo) to the ICR. We strate that Bub1 acts at multiple points to assure the cor- show that Bub1 works as a master organizer of the ICR. rect kinetochore formation. Introduction Attachment of chromosomes to spindle microtubules (MTs) thus, controlling the polymerization/depolymerization state of is performed by kinetochores, which are large proteinaceous tubulin fi laments to achieve correct end-on attachment of MTs structures that assemble at the centromeric regions of each sis- to the kinetochore (Andrews et al., 2004; Lan et al., 2004). -
Phenotype-Karyotype Correlation in Patientstrisomic
J Med Genet: first published as 10.1136/jmg.23.4.310 on 1 August 1986. Downloaded from Journal of Medical Genetics 1986, 23, 310-315 Phenotype-karyotype correlation in patients trisomic for various segments of chromosome 13 SUGANDHI A THARAPEL*, RAYMOND C LEWANDOWSKIt, AVIRACHAN T THARAPEL*, AND R SID WILROY JR* From *the Division of Genetics, Department of Pediatrics, University of Tennessee Center for the Health Sciences, Memphis, Tennessee; and tDriscoll Foundation Children's Hospital, Corpus Christi, Texas, USA. SUMMARY Analysis of clinical and cytogenetic findings taken from 62 published cases of partial trisomies of chromosome 13 showed that 15 had partial trisomy for the proximal long arm and 47 had trisomy for the distal long arm. Persistence of fetal haemoglobin (Hb F), increased projections of polymorphonuclear leucocytes (PMN), depressed nasal bridge, cleft lip/palate, and clinodactyly were more frequent in patients with proximal trisomy 13. In the distal trisomy group, the common features included haemangioma, bushy eyebrows, long curled eyelashes, prominent nasal bridge, long philtrum, thin upper lip, highly arched palate, and hexadactyly. In addition, several other features were common to both the groups, often showing inconsistency even when the same segment was in trisomy. The influence of the second aneusomy as the most likely cause for such inconsistent and overlapping phenotypes is discussed in view of the fact that 42 of 62 cases were derived from a balanced translocation carrier parent. During the past few years, our knowledge regarding parameters of complete trisomy 13 syndrome, malformation syndromes resulting from partial dupli- namely increased nuclear projections of poly- cations and deletions of chromosomes has increased morphonuclear leucocytes (PMN) to the 13q12 considerably. -
Congenital Heart Disease and Chromossomopathies Detected By
Review Article DOI: 10.1590/0103-0582201432213213 Congenital heart disease and chromossomopathies detected by the karyotype Cardiopatias congênitas e cromossomopatias detectadas por meio do cariótipo Cardiopatías congénitas y anomalías cromosómicas detectadas mediante cariotipo Patrícia Trevisan1, Rafael Fabiano M. Rosa2, Dayane Bohn Koshiyama1, Tatiana Diehl Zen1, Giorgio Adriano Paskulin1, Paulo Ricardo G. Zen1 ABSTRACT Conclusions: Despite all the progress made in recent de- cades in the field of cytogenetic, the karyotype remains an es- Objective: To review the relationship between congenital sential tool in order to evaluate patients with congenital heart heart defects and chromosomal abnormalities detected by disease. The detailed dysmorphological physical examination the karyotype. is of great importance to indicate the need of a karyotype. Data sources: Scientific articles were searched in MED- LINE database, using the descriptors “karyotype” OR Key-words: heart defects, congenital; karyotype; Down “chromosomal” OR “chromosome” AND “heart defects, syndrome; trisomy; chromosome aberrations. congenital”. The research was limited to articles published in English from 1980 on. RESUMO Data synthesis: Congenital heart disease is characterized by an etiologically heterogeneous and not well understood Objetivo: Realizar uma revisão da literatura sobre a group of lesions. Several researchers have evaluated the pres- relação das cardiopatias congênitas com anormalidades ence of chromosomal abnormalities detected by the karyo- cromossômicas detectadas por meio do exame de cariótipo. type in patients with congenital heart disease. However, Fontes de dados: Pesquisaram-se artigos científicos no most of the articles were retrospective studies developed in portal MEDLINE, utilizando-se os descritores “karyotype” Europe and only some of the studied patients had a karyo- OR “chromosomal” OR “chromosome” AND “heart defects, type exam. -
Maternally Recruited Aurora C Kinase Is More Stable Than Aurora B to Support Mouse Oocyte Maturation and Early Development
Maternally recruited Aurora C kinase is more stable PNAS PLUS than Aurora B to support mouse oocyte maturation and early development Karen Schindler1,2, Olga Davydenko2, Brianna Fram, Michael A. Lampson3, and Richard M. Schultz3 Department of Biology, University of Pennsylvania, Philadelphia, PA 19104 Edited* by John J. Eppig, The Jackson Laboratory, Bar Harbor, ME, and approved June 14, 2012 (received for review December 14, 2011) Aurora kinases are highly conserved, essential regulators of cell including abnormally condensed chromatin and abnormally division. Two Aurora kinase isoforms, A and B (AURKA and shaped acrosomes, but females were not examined (11). Muta- AURKB), are expressed ubiquitously in mammals, whereas a third tions in human AURKC cause meiotic arrest and formation of isoform, Aurora C (AURKC), is largely restricted to germ cells. tetraploid sperm (12), suggesting an essential role in cytokinesis Because AURKC is very similar to AURKB, based on sequence and in male meiosis. Experiments in mouse oocytes using a chemical functional analyses, why germ cells express AURKC is unclear. We inhibitor of AURKB (ZM447439) do not address the function of −/− report that Aurkc females are subfertile, and that AURKB func- AURKB because AURKC is also inhibited (13–17). Strategies tion declines as development progresses based on increasing se- using dominant-negative versions of AURKC are also difficult to verity of cytokinesis failure and arrested embryonic development. interpret, because the mutant may also compete with AURKB Furthermore, we find that neither Aurkb nor Aurkc is expressed (18). Overexpression studies have similar limitations because after the one-cell stage, and that AURKC is more stable during both kinases interact with inner centromere protein (INCENP) maturation than AURKB using fluorescently tagged reporter and these studies did not report expression levels of AURKB proteins. -
Complete Or Partial Homozygosity of Chromosome 13 in Primary Retinobiastoma'
[CANCER RESEARCH 47, 4189-4191. August 1, 1987] Complete or Partial Homozygosity of Chromosome 13 in Primary Retinobiastoma' William F. Benedict,2 Eri S. Srivatsan, Corey Mark, Ashutosh Banerjee, Robert S. Sparkes, and A. Linn Murphree3 Clayton Ocular Oncology Center, Departments of Ophthalmology and Pediatrics [W. F. B., E. S. S., C. M., A. B., A. L. M.], Children's Hospital of Los Angeles, Los Angeles, California 90027, and Departments of Medicine, Pediatrics, and Psychiatry [R. S.], University of California, Los Angeles, Los Angeles, California 90024 ABSTRACT retinoblastoma to document that two apparently normal No. 13 chromosomes were present. Sixteen such tumors were ran Sixteen ret ino Mast ornas were examined with chromosome 13 poly domly selected from patients with both unilateral and bilateral morphic probes to determine the frequency of homozygosity for the disease. Our results using various polymorphisms on chromo chromosome in the tumors. Each of the tumors had two cytogenetically normal appearing No. 13 chromosomes. Nontumorous cells from the some 13 indicate that 12 of the 16 tumors became homozygous same patients were heterozygous for the various polymorphic chromo for at least a portion of one chromosome 13. some 13 probes used. At least partial homozygosity for a single chro Additional information on another tumor from a patient mosome 13 was observed in 75% of the tumors. These studies confirm previously described (13) is also presented. Rapid clonal evo and extend previous studies which suggest that homozygosity or hemi- lution occurred in this tumor resulting in a change from hemi zygosity at RBI occurs in the majority of retinoblastomas.