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Cleaner Shrimp As Biocontrols in Aquaculture

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Cleaner Shrimp As Biocontrols in Aquaculture ResearchOnline@JCU This file is part of the following work: Vaughan, David Brendan (2018) Cleaner shrimp as biocontrols in aquaculture. PhD Thesis, James Cook University. Access to this file is available from: https://doi.org/10.25903/5c3d4447d7836 Copyright © 2018 David Brendan Vaughan The author has certified to JCU that they have made a reasonable effort to gain permission and acknowledge the owners of any third party copyright material included in this document. If you believe that this is not the case, please email [email protected] Cleaner shrimp as biocontrols in aquaculture Thesis submitted by David Brendan Vaughan BSc (Hons.), MSc, Pr.Sci.Nat In fulfilment of the requirements for Doctorate of Philosophy (Science) College of Science and Engineering James Cook University, Australia [31 August, 2018] Original illustration of Pseudanthias squamipinnis being cleaned by Lysmata amboinensis by D. B. Vaughan, pen-and-ink Scholarship during candidature Peer reviewed publications during candidature: 1. Vaughan, D.B., Grutter, A.S., and Hutson, K.S. (2018, in press). Cleaner shrimp are a sustainable option to treat parasitic disease in farmed fish. Scientific Reports [IF = 4.122]. 2. Vaughan, D.B., Grutter, A.S., and Hutson, K.S. (2018, in press). Cleaner shrimp remove parasite eggs on fish cages. Aquaculture Environment Interactions, DOI:10.3354/aei00280 [IF = 2.900]. 3. Vaughan, D.B., Grutter, A.S., Ferguson, H.W., Jones, R., and Hutson, K.S. (2018). Cleaner shrimp are true cleaners of injured fish. Marine Biology 164: 118, DOI:10.1007/s00227-018-3379-y [IF = 2.391]. 4. Trujillo-González, A., Becker, J., Vaughan, D.B., and Hutson, K.S. (2018). Monogenean parasites infect ornamental fish imported to Australia. Parasitology Research, DOI: 10.1007/s00436-018-5776-z [IF = 2.329]. 5. Hutson, K.S., Brazenor, A.K., Vaughan, D.B., and Trujillo-González, A. (2018). Monogenean parasite cultures: current techniques and recent advances. Advances in Parasitology 99, 61–91 [IF 4.255]. 6. Vaughan, D.B., and Christison, K.W. (2017). Anoplodiscus Sonsino, 1890: a new Australian species, and the first African record from South African hosts. Systematic Parasitology 94, 891–906 [IF 1.316]. 7. Bastos Gomes, G., Miller, T.L., Vaughan, D.B., Jerry, D.R., McCowan, C., Bradley, T., and Hutson, K.S. (2017). Evidence of multiple species of Chilodonella (Protozoa, Ciliophora) infecting Australian farmed freshwater fishes. Veterinary Parasitology 237, 8–16 [IF. 2.278]. i Scholarship during Candidature 8. Penning, M.R., Vaughan, D.B., Fivaz, K., and McEwan, T. (2017). Chapter 32. Chemical immobilization of elasmobranchs at uShaka Sea World in Durban, South Africa. In: M. Smith, D. Warmolts, D. Thoney, R. Hueter, M. Murray, and J. Ezcurra (Eds). The Elasmobranch Husbandry Manual 2: Recent Advances in the Care of Sharks, Rays and their Relatives, Ohio Biological Survey, USA, viii + 504 p. 9. Vaughan, D.B., Grutter, A.S., Costello, M.J., and Hutson, K.S. (2016). Cleaner fishes and shrimp diversity and a re-evaluation of cleaning symbioses. Fish and Fisheries, DOI: 10.1111/faf.12198 [IF 9.013]. 10. Vaughan, D.B., Chisholm, L.A., and Hansen, H. (2016). Electrocotyle whittingtoni n. gen., n. sp. (Monogenea: Monocotylidae: Heterocotylinae) from the gills of a captive onefin electric ray, Narke capensis (Narkidae) at Two Oceans Aquarium, Cape Town, South Africa. Parasitology Research 115, 3575–3584 [IF = 2.329]. Symposium presentations during candidature (presenter underlined): 1. Vaughan, D.B., Grutter, A.S., Ferguson, H., and Hutson, K.S. (2017). Cleaner shrimp as biocontrols. Fourth Australasian Scientific Conference on Aquatic Animal Health, Cairns, Australia, 12 July, 2017. 2. Hutson, K.S., Grutter, A.S., Militz, T., and Vaughan, D.B. (2016). Interactions between cleaners and client fishes. Joint Australian Society of Fish Biology and Oceania Chondrichthyan Society conference, Tasmania, Australia, 4–7 September, 2016. 3. Mitchell, D., Christison K.W., van As, L., and Vaughan, D.B. (2016). Hexabothriid parasites from Rajidae species of South Africa. 45th Parasitological Society of Southern Africa Conference, South Africa. 28–30 August, 2016. 4. Vaughan, D.B., Trujillo-González, A., and Hutson, K.S. (2016). Cleaner shrimp: humble janitors, double agents or skilled surgeons? 3rd International Workshop on Symbiotic Copepoda, Heron Island, Australia. 10–16 July, 2016. ii Scholarship during Candidature 5. Christison, K.W., and Vaughan, D.B. (2015). Amyloodinium ocellatum in captive fish populations and its potential impacts for finfish farming in South Africa. 12th Conference of the Aquaculture Association of Southern Africa. South Africa. 27 September–2 October, 2015. 6. Vaughan, D.B., and Christison, K.W. (2015). An investigation of Amyloodinium ocellatum in captive fish populations in South Africa and its potential impacts for finfish farming. 3rd Fisheries Research and Development Corporation Australasian Aquatic Animal Health Scientific Conference. Cairns, Australia. 6–10 July, 2015. iii Scholarship during Candidature Statement on the contribution of others Financial support for this research was provided by Dr Kate Hutson, The Centre for Sustainable Tropical Fisheries and Aquaculture, College of Science and Engineering, James Cook University, supplemented by the Competitive Research Training Grant award (2018), James Cook University. I was awarded the competitive International Post-graduate Research Scholarship (Ausralian Government; James Cook University) and the Prestige Scholarship (James Cook University) in 2015 for a period of three and a half years. The former covered the cost of study at James Cook University, and Overseas Health Cover. Both scholarships contributed a living stipend. Chapter 2; contributors: Alexandra S. Grutter, Mark J. Costello, Kate S. Hutson. Alexandra Grutter assisted with the conceptual idea and final editing of the associated manuscript. Mark Costello created the original version of Figure 2.2, suggested the inclusion of Figures 2.4 and 2.5, and assisted with final editing. Kate Hutson assisted with the conceptual idea, suggested the inclusion of Figure 2.1, provided the financial assistance, and provided editorial support. Citation: Vaughan, D.B., Grutter, A.S., Costello, M.J., and Hutson, K.S. (2016). Cleaner fishes and shrimp diversity and a re-evaluation of cleaning symbioses. Fish and Fisheries, DOI:10.1111/faf.12198. Chapter 3; contributors: Alexandra S. Grutter, Hugh W. Ferguson, Rhondda Jones, Kate S. Hutson. Alexandra Grutter assisted with the conceptual idea and final editing of the associated manuscript. Hugh Ferguson provided pathological interpretation of duplicate histological iv Statement on the Contribution of Others sections and contributed editorial support. Rhondda Jones suggested all statistical analyses, and assisted with the interpretation of the model outputs. Kate Hutson assisted with the conceptual idea and experimental design, provided the financial assistance for the purchase of livestock, and provided editorial support. Citation: Vaughan, D.B., Grutter, A.S., Ferguson, H.W., Jones, R., and Hutson, K.S. (2018). Cleaner shrimp are true cleaners of injured fish. Marine Biology 164, 118, DOI:10.1007/s00227-018-3379-y. Chapter 4; contributors: Alexandra S. Grutter, Kate S. Hutson. Alexandra Grutter provided editorial and focal direction support. Kate Hutson assisted with the conceptual idea and experimental design, provided the financial assistance for the purchase of livestock, and provided editorial support. Citation: Vaughan, D.B., Grutter, A.S., and Hutson, K.S. (2018, in press). Cleaner shrimp are a sustainable option to treat parasitic disease in farmed fish. Scientific Reports. Chapter 5; contributors: Alexandra S. Grutter, Kate S. Hutson. Alexandra Grutter provided editorial support. Kate Hutson assisted with the conceptual idea and experimental design, provided the financial assistance for the purchase of livestock, and provided editorial support. Citation: Vaughan, D.B., Grutter, A.S., and Hutson, K.S. (2018). Cleaner shrimp remove parasite eggs on fish cages. Aquaculture Environment Interactions, DOI:10.3354/aei00280. Appendix 6; contributors: Alexandra S. Grutter, Dianne Bray, Karen Cheney, Justin Marshall, and Kate S. Hutson. Alexandra Grutter assisted with the conceptual design, and provided editorial support. Kate Hutson and Dianne Bray assisted with the conceptual idea and experimental design. Kate v Statement on the Contribution of Others Hutson provided the financial assistance for the purchase of hardware and livestock, and provided editorial support. Permission to use Fig. A6.1 (XNite UV filter spectral analysis) was granted by Dan Llewellyn, LDP LLC www.MaxMax.com, who also supplied the image electronically. Permission to use Fig. A6.3 (unpublished Stenopus hispidus spectral reflectance) was granted by Karen Cheney and Justin Marshall, who also supplied the image electronically. Copyright note Every reasonable effort has been made to gain permission and to acknowledge the owners of copyright material. I would be pleased to hear from any copyright owner who has been omitted or incorrectly acknowledged. vi Statement on the Contribution of Others Statement on animal ethics and welfare One thousand, four hundred and thirty six individual animals, representing 400 Epinephelus coioides, 520 E. lanceolatus, 150 Lates calcarifer, 126 female Pseudanthias squamipinnis, 30 Lysmata amboinensis, 150 L. vittata, 30 Stenopus hispidus, and 30 Urocaridella antonbruunii, were used to generate
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