Short Review: Assessing the Zoonotic Potential of Arboviruses of African Origin
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Evolutionary Relationships and Systematics of the Alphaviruses ANN M
JOURNAL OF VIROLOGY, Nov. 2001, p. 10118–10131 Vol. 75, No. 21 0022-538X/01/$04.00ϩ0 DOI: 10.1128/JVI.75.21.10118–10131.2001 Copyright © 2001, American Society for Microbiology. All Rights Reserved. Evolutionary Relationships and Systematics of the Alphaviruses ANN M. POWERS,1,2† AARON C. BRAULT,1† YUKIO SHIRAKO,3‡ ELLEN G. STRAUSS,3 1 3 1 WENLI KANG, JAMES H. STRAUSS, AND SCOTT C. WEAVER * Department of Pathology and Center for Tropical Diseases, University of Texas Medical Branch, Galveston, Texas 77555-06091; Division of Vector-Borne Infectious Diseases, Centers for Disease Control and Prevention, Fort Collins, Colorado2; and Division of Biology, California Institute of Technology, Pasadena, California 911253 Received 1 May 2001/Accepted 8 August 2001 Partial E1 envelope glycoprotein gene sequences and complete structural polyprotein sequences were used to compare divergence and construct phylogenetic trees for the genus Alphavirus. Tree topologies indicated that the mosquito-borne alphaviruses could have arisen in either the Old or the New World, with at least two transoceanic introductions to account for their current distribution. The time frame for alphavirus diversifi- cation could not be estimated because maximum-likelihood analyses indicated that the nucleotide substitution rate varies considerably across sites within the genome. While most trees showed evolutionary relationships consistent with current antigenic complexes and species, several changes to the current classification are proposed. The recently identified fish alphaviruses salmon pancreas disease virus and sleeping disease virus appear to be variants or subtypes of a new alphavirus species. Southern elephant seal virus is also a new alphavirus distantly related to all of the others analyzed. -
Temperature-Sensitive Mutants of Sindbis Virus: Complementation Group F Mutants Have Lesions in Nsp4 YOUNG S
JOURNAL OF VIROLOGY, Mar. 1989, p. 1194-1202 Vol. 63, No. 3 0022-538X/89/031194-09$02.00/0 Copyright © 1989, American Society for Microbiology Mapping of RNA- Temperature-Sensitive Mutants of Sindbis Virus: Complementation Group F Mutants Have Lesions in nsP4 YOUNG S. HAHN,' ARASH GRAKOUI,2 CHARLES M. RICE,2 ELLEN G. STRAUSS,' AND JAMES H. STRAUSS'* Division ofBiology, California Institute of Technology, Pasadena, California 91125,1 and Department of Microbiology and Immunology, Washington University, St. Louis, Missouri 631102 Received 24 October 1988/Accepted 28 November 1988 Temperature-sensitive (ts) mutants of Sindbis virus belonging to complementation group F, ts6, tsllO, and ts118, are defective in RNA synthesis at the nonpermissive temperature. cDNA clones of these group F mutants, as well as of ts+ revertants, have been constructed. To assign the ts phenotype to a specific region in the viral genome, restriction fragments from the mutant cDNA clones were used to replace the corresponding regions of the full-length clone Totol101 of Sindbis virus. These hybrid plasmids were transcribed in vitro by SP6 RNA polymerase to produce infectious transcripts, and the virus recovered was tested for temperature sensitivity. After the ts lesion of each mutant was mapped to a specific region of 400 to 800 nucleotides by this approach, this region of the cDNA clones of both the ts mutant and ts+ revertants was sequenced in order to determine the precise nucleotide change and amino acid substitution responsible for each mutation. Rescued mutants, which have a uniform background except for one or two defined changes, were examined for viral RNA synthesis and complementation to show that the phenotypes observed were the result of the mutations mapped. -
Data-Driven Identification of Potential Zika Virus Vectors Michelle V Evans1,2*, Tad a Dallas1,3, Barbara a Han4, Courtney C Murdock1,2,5,6,7,8, John M Drake1,2,8
RESEARCH ARTICLE Data-driven identification of potential Zika virus vectors Michelle V Evans1,2*, Tad A Dallas1,3, Barbara A Han4, Courtney C Murdock1,2,5,6,7,8, John M Drake1,2,8 1Odum School of Ecology, University of Georgia, Athens, United States; 2Center for the Ecology of Infectious Diseases, University of Georgia, Athens, United States; 3Department of Environmental Science and Policy, University of California-Davis, Davis, United States; 4Cary Institute of Ecosystem Studies, Millbrook, United States; 5Department of Infectious Disease, University of Georgia, Athens, United States; 6Center for Tropical Emerging Global Diseases, University of Georgia, Athens, United States; 7Center for Vaccines and Immunology, University of Georgia, Athens, United States; 8River Basin Center, University of Georgia, Athens, United States Abstract Zika is an emerging virus whose rapid spread is of great public health concern. Knowledge about transmission remains incomplete, especially concerning potential transmission in geographic areas in which it has not yet been introduced. To identify unknown vectors of Zika, we developed a data-driven model linking vector species and the Zika virus via vector-virus trait combinations that confer a propensity toward associations in an ecological network connecting flaviviruses and their mosquito vectors. Our model predicts that thirty-five species may be able to transmit the virus, seven of which are found in the continental United States, including Culex quinquefasciatus and Cx. pipiens. We suggest that empirical studies prioritize these species to confirm predictions of vector competence, enabling the correct identification of populations at risk for transmission within the United States. *For correspondence: mvevans@ DOI: 10.7554/eLife.22053.001 uga.edu Competing interests: The authors declare that no competing interests exist. -
Molecular Epidemiology and Characterisation of Wesselsbron Virus and Co-Circulating Alphaviruses in Sentinel Animals in South Africa
Molecular Epidemiology and Characterisation of Wesselsbron Virus and Co-circulating Alphaviruses in Sentinel Animals in South Africa 3 4 Human S.1, Gerdes T , Stroebel J. C. , and Venter M1, 2* 1 Department of Medical Virology, Faculty of Health Sciences, University of Pretoria, South Africa; 2 National Health Laboratory Services, Tshwane Academic Division; 3 Onderstepoort Veterinary Institute, South Africa; 4 Western Cape Provincial Veterinary Laboratory * Contact person: Dr M Venter. Senior lecturer, Department of Medical Virology, Faculty of Health Sciences, University of Pretoria/NHLS Tshwane Academic Division, P.O Box 2034, Pretoria, 0001, South Africa. Tel: +27 12 319 2660, Fax: +27 12 319 5550, e-mail: [email protected], [email protected] ABSTRACT Flavi and alphaviruses are a significant cause of morbidity and mortality in both humans and animals worldwide. In order to determine the contribution of flavi and alphaviruses to unexplained neurological hepatic or fever cases in horses and other animals in South Africa, cases resembling these symptoms were screened for Flaviviruses (other than West Nile virus) and Alphaviruses. The results show that both Wesselsbron and alphaviruses (Sindbis-like and Middelburg virus) can contribute to neurological disease and fevers in horses. KEYWORDS Wesselsbron virus disease, Sindbis-like virus, Middelburg virus INTRODUCTION In South Africa (SA) the most important mosquito borne viruses are West Nile Virus (WNV) and Wesselsbron virus (Flaviviridae) and the Sindbis and Middelburg viruses (Togaviridae). These viruses are transmitted by Culex spp. (WNV and Sindbis virus) and Aedes spp. (Wesselsbron and Middelburg virus) mosquitoes. Wesselsbron (WSLB) virus was first discovered in 1955 in the Wesselsbron district of the Free State province in SA where it was isolated from an eight-day-old lamb (Weiss et al., 1956). -
Mosquitoes of Western Uganda
HHS Public Access Author manuscript Author ManuscriptAuthor Manuscript Author J Med Entomol Manuscript Author . Author Manuscript Author manuscript; available in PMC 2019 May 26. Published in final edited form as: J Med Entomol. 2012 November ; 49(6): 1289–1306. doi:10.1603/me12111. Mosquitoes of Western Uganda J.-P. Mutebi1, M. B. Crabtree1, R. J. Kent Crockett1, A. M. Powers1, J. J. Lutwama2, and B. R. Miller1 1Centers for Disease Control and Prevention (CDC), 3150 Rampart Road, Fort Collins, Colorado 80521. 2Department of Arbovirology, Uganda Virus Research Institute (UVRI), P.O. Box 49, Entebbe, Uganda. Abstract The mosquito fauna in many areas of western Uganda has never been studied and is currently unknown. One area, Bwamba County, has been previously studied and documented but the species lists have not been updated for more than 40 years. This paucity of data makes it difficult to determine which arthropod-borne viruses pose a risk to human or animal populations. Using CO2 baited-light traps, from 2008 through 2010, 67,731 mosquitoes were captured at five locations in western Uganda including Mweya, Sempaya, Maramagambo, Bwindi (BINP), and Kibale (KNP). Overall, 88 mosquito species, 7 subspecies and 7 species groups in 10 genera were collected. The largest number of species was collected at Sempaya (65 species), followed by Maramagambo (45), Mweya (34), BINP (33), and KNP (22). However, species diversity was highest in BINP (Simpson’s Diversity Index 1-D = 0.85), followed by KNP (0.80), Maramagambo (0.79), Sempaya (0.67), and Mweya (0.56). Only six species (Aedes (Aedimorphus) cumminsii (Theobald), Aedes (Neomelaniconion) circumluteolus (Theobald), Culex (Culex) antennatus (Becker), Culex (Culex) decens group, Culex (Lutzia) tigripes De Grandpre and De Charmoy, and Culex (Oculeomyia) annulioris Theobald), were collected from all 5 sites suggesting large differences in species composition among sites. -
Study of Chikungunya Virus Entry and Host Response to Infection Marie Cresson
Study of chikungunya virus entry and host response to infection Marie Cresson To cite this version: Marie Cresson. Study of chikungunya virus entry and host response to infection. Virology. Uni- versité de Lyon; Institut Pasteur of Shanghai. Chinese Academy of Sciences, 2019. English. NNT : 2019LYSE1050. tel-03270900 HAL Id: tel-03270900 https://tel.archives-ouvertes.fr/tel-03270900 Submitted on 25 Jun 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. N°d’ordre NNT : 2019LYSE1050 THESE de DOCTORAT DE L’UNIVERSITE DE LYON opérée au sein de l’Université Claude Bernard Lyon 1 Ecole Doctorale N° 341 – E2M2 Evolution, Ecosystèmes, Microbiologie, Modélisation Spécialité de doctorat : Biologie Discipline : Virologie Soutenue publiquement le 15/04/2019, par : Marie Cresson Study of chikungunya virus entry and host response to infection Devant le jury composé de : Choumet Valérie - Chargée de recherche - Institut Pasteur Paris Rapporteure Meng Guangxun - Professeur - Institut Pasteur Shanghai Rapporteur Lozach Pierre-Yves - Chargé de recherche - CHU d'Heidelberg Rapporteur Kretz Carole - Professeure - Université Claude Bernard Lyon 1 Examinatrice Roques Pierre - Directeur de recherche - CEA Fontenay-aux-Roses Examinateur Maisse-Paradisi Carine - Chargée de recherche - INRA Directrice de thèse Lavillette Dimitri - Professeur - Institut Pasteur Shanghai Co-directeur de thèse 2 UNIVERSITE CLAUDE BERNARD - LYON 1 Président de l’Université M. -
Joseph Icenogle
Progress Toward Rubella Elimination and CRS Prevention in Europe 8-10 February 2010 Rome MH Chen1, E Abernathy1, Q Zheng,1 E Kirkness2, BackgroundS Sumsita 2, W Bellini, Information J Icenogle1 1:National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30333,Rubella USA; Virus 2: J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA Joseph P. Icenogle Rubella Laboratory Team Lead MMRH Laboratory Branch National Center for Immunization & Respiratory Diseases MMRHLB Outline 1. A brief history of rubella virus, before the development of vaccines 2. Structure of the virus, partly by analogy to related viruses 3. Description of the genome of rubella virus 4. Variability in the genome of circulating rubella viruses 5. Some properties of specific viral proteins 6. The life cycle of rubella virus in tissue culture; details matter 7. Emphasis on a couple of important virus-host cell interactions Brief, Selected History of Rubella and Congenital Rubella Syndrome, Before Vaccines were Developed. 18th Century----Description of disease by German authors 1881--------------Recognition of rubella as a disease independent from measles and scarlet fever by an International Congress of Medicine in London 1881 to 1941---Little or no recognition of rubella as anything other than a mild childhood rash illness. Significant influence of prevalent opinion that birth defects were all of genetic origin. 1941-------------- N. McAlister Gregg. Congenital Cataract Following German Measles in the Mother. Trans Ophthalmol Soc Aust 1941;3:35-46 1941-1950s----Lack of Clarity on the importance of Congenital Rubella Syndrome 1957-1960------Multiple studies are published establishing Congenital Rubella Syndrome as a prevalent and serious disease. -
Medical Aspects of Biological Warfare
Alphavirus Encephalitides Chapter 20 ALPHAVIRUS ENCEPHALITIDES SHELLEY P. HONNOLD, DVM, PhD*; ERIC C. MOSSEL, PhD†; LESLEY C. DUPUY, PhD‡; ELAINE M. MORAZZANI, PhD§; SHANNON S. MARTIN, PhD¥; MARY KATE HART, PhD¶; GEORGE V. LUDWIG, PhD**; MICHAEL D. PARKER, PhD††; JONATHAN F. SMITH, PhD‡‡; DOUGLAS S. REED, PhD§§; and PAMELA J. GLASS, PhD¥¥ INTRODUCTION HISTORY AND SIGNIFICANCE ANTIGENICITY AND EPIDEMIOLOGY Antigenic and Genetic Relationships Epidemiology and Ecology STRUCTURE AND REPLICATION OF ALPHAVIRUSES Virion Structure PATHOGENESIS CLINICAL DISEASE AND DIAGNOSIS Venezuelan Equine Encephalitis Eastern Equine Encephalitis Western Equine Encephalitis Differential Diagnosis of Alphavirus Encephalitis Medical Management and Prevention IMMUNOPROPHYLAXIS Relevant Immune Effector Mechanisms Passive Immunization Active Immunization THERAPEUTICS SUMMARY 479 244-949 DLA DS.indb 479 6/4/18 11:58 AM Medical Aspects of Biological Warfare *Lieutenant Colonel, Veterinary Corps, US Army; Director, Research Support and Chief, Pathology Division, US Army Medical Research Institute of Infectious Diseases, 1425 Porter Street, Fort Detrick, Maryland 21702; formerly, Biodefense Research Pathologist, Pathology Division, US Army Medical Research Institute of Infectious Diseases, 1425 Porter Street, Fort Detrick, Maryland †Major, Medical Service Corps, US Army Reserve; Microbiologist, Division of Virology, US Army Medical Research Institute of Infectious Diseases, 1425 Porter Street, Fort Detrick, Maryland 21702; formerly, Science and Technology Advisor, Detachment -
Usutu Virus: a New Threat?
Epidemiology and Infection Usutu virus: A new threat? cambridge.org/hyg M. Clé1, C. Beck2, S. Salinas1, S. Lecollinet2, S. Gutierrez3, P. Van de Perre4, T. Baldet3, V. Foulongne4 and Y. Simonin1 1Pathogenesis and Control of Chronic Infections, University of Montpellier, Inserm, EFS, Montpellier, France; 2UPE, Review Anses Animal Health Laboratory, UMR1161 Virology, INRA, Anses, ENVA, Maisons-Alfort, France; 3ASTRE, CIRAD, INRA, University of Montpellier, Montpellier, France and 4Pathogenesis and Control of Chronic Infections, Cite this article: Clé M, Beck C, Salinas S, University of Montpellier, Inserm, EFS, CHU Montpellier, Montpellier, France Lecollinet S, Gutierrez S, Van de Perre P, Baldet T, Foulongne V, Simonin Y (2019). Usutu virus: A new threat? Epidemiology and Infection Abstract – 147, e232, 1 11. https://doi.org/10.1017/ Usutu virus (USUV) is an emerging arbovirus that was first isolated in South Africa in 1959. S0950268819001213 This Flavivirus is maintained in the environment through a typical enzootic cycle involving Received: 12 April 2019 mosquitoes and birds. USUV has spread to a large part of the European continent over the Revised: 22 May 2019 two decades mainly leading to substantial avian mortalities with a significant recrudescence Accepted: 4 June 2019 of bird infections recorded throughout Europe within the few last years. USUV infection in Key words: humans is considered to be most often asymptomatic or to cause mild clinical signs. Arboviruses; virology (human) and Nonetheless, a few cases of neurological complications such as encephalitis or meningo- epidemiology; virology encephalitis have been reported. USUV and West Nile virus (WNV) share many features, like a close phylogenetic relatedness and a similar ecology, with co-circulation frequently Author for correspondence: Y. -
Sindbis and Middelburg Old World Alphaviruses Associated with Neurologic Disease in Horses, South Africa
Sindbis and Middelburg Old World Alphaviruses Associated with Neurologic Disease in Horses, South Africa Stephanie van Niekerk, Stacey Human, and acute neurologic infections reported to our surveil- June Williams, Erna van Wilpe, lance program by veterinarians across South Africa dur- Marthi Pretorius, Robert Swanepoel, ing January 2008–December 2013. Of reported cases, 346 Marietjie Venter horses had neurologic signs; 277 had mainly febrile illness and other miscellaneous signs, including colic and sudden Old World alphaviruses were identified in 52 of 623 horses death (online Technical Appendix Figure 1, panel A, http:// with febrile or neurologic disease in South Africa. Five of wwwnc.cdc.gov/EID/article/21/12/15-0132-Techapp.pdf). 8 Sindbis virus infections were mild; 2 of 3 fatal cases in- Formalin-fixed tissue samples from horses that died were volved co-infections. Of 44 Middelburg virus infections, 28 caused neurologic disease; 12 were fatal. Middelburg virus submitted for histopathology. Horses ranged from <1 to 20 likely has zoonotic potential. years of age and included thoroughbred, Arabian, warm- blood, and part-bred horses; most were bred locally. A generic nested alphavirus nonstructural polyprotein lphaviruses (Togaviridae) include zoonotic, vector- (nsP) region 4 gene reverse transcription PCR (10) was Aborne viruses with epidemic potential (1). Phyloge- used to screen total nucleic acids. TaqMan probes (Roche, netic analysis defined 2 monophyletic groups: 1) the New Indianapolis, IN, USA) were developed for rapid differen- World group, consisting of Sindbis virus (SINV), Venezu- tiation of MIDV and SINV by real-time PCR (online Tech- elan equine encephalitis virus, and Eastern equine encepha- nical Appendix). -
Sindbis and Middelburg Old World Alphaviruses Associated with Neurologic Disease in Horses, South Africa
Article DOI: http://dx.doi.org/10.3201/eid2112.150132 Sindbis and Middelburg Old World Alphaviruses Associated with Neurologic Disease in Horses, South Africa Technical Appendix Detailed Methods and Results 1. Generic Real-Time Reverse Transcription PCR for Diagnosis of Middelburg and Sindbis Virus Infections Viral RNA was extracted from plasma or serum samples derived from EDTA-clotted blood and from cerebrospinal fluid samples with the High Pure Viral Total Nucleic Acid Extraction Kit (Roche, Indianapolis, IN, USA). Nervous tissue or visceral organ samples were homogenized by using a mortar and pestle, and RNA was extracted by using the RNeasy Plus Mini Kit (QIAGEN, Valencia, CA, USA). The first round and nested PCR primers that were based on a highly conserved region of the nsP4 gene were prepared as described previously (1). First-round PCR was performed by using the Titan one tube reverse transcription (RT)-PCR system (Roche). Each reaction contained 10 μL of RNA, 10 μL 10× reaction buffer, 1 μL of dNTP mix (10 mmol/L), 2 μL of 10 pmol of each primer (Alpha1+; Alpha1–), 2.5 μL Dithiothreitol solution (100 mmol/L), 0.25 μL RNase inhibitor (40 U/μL), and 1 μL of the Titan enzyme mix. The final volume was made up to 50 μL with distilled water. Cycling conditions were 50°C for 30 min, 94°C for 2 min, (94°C for 10 s, 52°C for 30 s, 68°C for 1 min) × 35 cycles, and 68°C for 7 min. By using Primer 3 (2), two probes were designed for rapid differentiation of Sindbis virus (SINV, a New World virus) and Middelburg virus (MIDV, an Old World virus) as follows: SINV: 5 ATGACGAGTATTGGGAGGAGTTTG 3-FAM; MIDV: 5 GCTTTAAGAAGTACGCATGCAACA 3 –VIC. -
Zika Virus: an Updated Review of Competent Or Naturally Infected Mosquitoes Yanouk Epelboin, Stanislas Talaga, Loïc Epelboin, Isabelle Dusfour
Zika virus: An updated review of competent or naturally infected mosquitoes Yanouk Epelboin, Stanislas Talaga, Loïc Epelboin, Isabelle Dusfour To cite this version: Yanouk Epelboin, Stanislas Talaga, Loïc Epelboin, Isabelle Dusfour. Zika virus: An updated review of competent or naturally infected mosquitoes. PLoS Neglected Tropical Diseases, Public Library of Science, 2017, 11 (11), pp.e0005933. 10.1371/journal.pntd.0005933. hal-01844517 HAL Id: hal-01844517 https://hal.archives-ouvertes.fr/hal-01844517 Submitted on 19 Jul 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. REVIEW Zika virus: An updated review of competent or naturally infected mosquitoes Yanouk Epelboin1*, Stanislas Talaga1, Loïc Epelboin2,3, Isabelle Dusfour1 1 VectopoÃle Amazonien Emile Abonnenc, Vector Control and Adaptation Unit, Institut Pasteur de la Guyane, Cayenne, French Guiana, France, 2 Infectious and Tropical Diseases Unit, Centre Hospitalier AndreÂe Rosemon, Cayenne, French Guiana, France, 3 Ecosystèmes amazoniens et pathologie tropicale (EPAT), EA 3593, UniversiteÂ