Non-Commercial Use Only Acidification Causes the E1 Protein to Under- Go a Conformational Change, Exposing the Fusion Loop
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Evolutionary Relationships and Systematics of the Alphaviruses ANN M
JOURNAL OF VIROLOGY, Nov. 2001, p. 10118–10131 Vol. 75, No. 21 0022-538X/01/$04.00ϩ0 DOI: 10.1128/JVI.75.21.10118–10131.2001 Copyright © 2001, American Society for Microbiology. All Rights Reserved. Evolutionary Relationships and Systematics of the Alphaviruses ANN M. POWERS,1,2† AARON C. BRAULT,1† YUKIO SHIRAKO,3‡ ELLEN G. STRAUSS,3 1 3 1 WENLI KANG, JAMES H. STRAUSS, AND SCOTT C. WEAVER * Department of Pathology and Center for Tropical Diseases, University of Texas Medical Branch, Galveston, Texas 77555-06091; Division of Vector-Borne Infectious Diseases, Centers for Disease Control and Prevention, Fort Collins, Colorado2; and Division of Biology, California Institute of Technology, Pasadena, California 911253 Received 1 May 2001/Accepted 8 August 2001 Partial E1 envelope glycoprotein gene sequences and complete structural polyprotein sequences were used to compare divergence and construct phylogenetic trees for the genus Alphavirus. Tree topologies indicated that the mosquito-borne alphaviruses could have arisen in either the Old or the New World, with at least two transoceanic introductions to account for their current distribution. The time frame for alphavirus diversifi- cation could not be estimated because maximum-likelihood analyses indicated that the nucleotide substitution rate varies considerably across sites within the genome. While most trees showed evolutionary relationships consistent with current antigenic complexes and species, several changes to the current classification are proposed. The recently identified fish alphaviruses salmon pancreas disease virus and sleeping disease virus appear to be variants or subtypes of a new alphavirus species. Southern elephant seal virus is also a new alphavirus distantly related to all of the others analyzed. -
A Zika Virus Envelope Mutation Preceding the 2015 Epidemic Enhances Virulence and Fitness for Transmission
A Zika virus envelope mutation preceding the 2015 epidemic enhances virulence and fitness for transmission Chao Shana,b,1,2, Hongjie Xiaa,1, Sherry L. Hallerc,d,e, Sasha R. Azarc,d,e, Yang Liua, Jianying Liuc,d, Antonio E. Muruatoc, Rubing Chenc,d,e,f, Shannan L. Rossic,d,f, Maki Wakamiyaa, Nikos Vasilakisd,f,g,h,i, Rongjuan Peib, Camila R. Fontes-Garfiasa, Sanjay Kumar Singhj, Xuping Xiea, Scott C. Weaverc,d,e,k,l,2, and Pei-Yong Shia,d,e,k,l,2 aDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX 77555; bState Key Laboratory of Virology, Wuhan Institute of Virology, Chinese Academy of Sciences, 430071 Wuhan, China; cDepartment of Microbiology and Immunology, University of Texas Medical Branch, Galveston, TX 77555; dInstitute for Human Infections and Immunity, University of Texas Medical Branch, Galveston, TX 77555; eInstitute for Translational Science, University of Texas Medical Branch, Galveston, TX 77555; fDepartment of Pathology, University of Texas Medical Branch, Galveston, TX 77555; gWorld Reference Center of Emerging Viruses and Arboviruses, University of Texas Medical Branch, Galveston, TX 77555; hCenter for Biodefence and Emerging Infectious Diseases, University of Texas Medical Branch, Galveston, TX 77555; iCenter for Tropical Diseases, University of Texas Medical Branch, Galveston, TX 77555; jDepartment of Neurosurgery-Research, The University of Texas MD Anderson Cancer Center, Houston, TX 77030; kSealy Institute for Vaccine Sciences, University of Texas Medical Branch, Galveston, TX 77555; and lSealy Center for Structural Biology and Molecular Biophysics, University of Texas Medical Branch, Galveston, TX 77555 Edited by Peter Palese, Icahn School of Medicine at Mount Sinai, New York, NY, and approved July 2, 2020 (received for review March 26, 2020) Arboviruses maintain high mutation rates due to lack of proof- recently been shown to orchestrate flavivirus assembly through reading ability of their viral polymerases, in some cases facilitating recruiting structural proteins and viral RNA (8, 9). -
Temperature-Sensitive Mutants of Sindbis Virus: Complementation Group F Mutants Have Lesions in Nsp4 YOUNG S
JOURNAL OF VIROLOGY, Mar. 1989, p. 1194-1202 Vol. 63, No. 3 0022-538X/89/031194-09$02.00/0 Copyright © 1989, American Society for Microbiology Mapping of RNA- Temperature-Sensitive Mutants of Sindbis Virus: Complementation Group F Mutants Have Lesions in nsP4 YOUNG S. HAHN,' ARASH GRAKOUI,2 CHARLES M. RICE,2 ELLEN G. STRAUSS,' AND JAMES H. STRAUSS'* Division ofBiology, California Institute of Technology, Pasadena, California 91125,1 and Department of Microbiology and Immunology, Washington University, St. Louis, Missouri 631102 Received 24 October 1988/Accepted 28 November 1988 Temperature-sensitive (ts) mutants of Sindbis virus belonging to complementation group F, ts6, tsllO, and ts118, are defective in RNA synthesis at the nonpermissive temperature. cDNA clones of these group F mutants, as well as of ts+ revertants, have been constructed. To assign the ts phenotype to a specific region in the viral genome, restriction fragments from the mutant cDNA clones were used to replace the corresponding regions of the full-length clone Totol101 of Sindbis virus. These hybrid plasmids were transcribed in vitro by SP6 RNA polymerase to produce infectious transcripts, and the virus recovered was tested for temperature sensitivity. After the ts lesion of each mutant was mapped to a specific region of 400 to 800 nucleotides by this approach, this region of the cDNA clones of both the ts mutant and ts+ revertants was sequenced in order to determine the precise nucleotide change and amino acid substitution responsible for each mutation. Rescued mutants, which have a uniform background except for one or two defined changes, were examined for viral RNA synthesis and complementation to show that the phenotypes observed were the result of the mutations mapped. -
The Non-Human Reservoirs of Ross River Virus: a Systematic Review of the Evidence Eloise B
Stephenson et al. Parasites & Vectors (2018) 11:188 https://doi.org/10.1186/s13071-018-2733-8 REVIEW Open Access The non-human reservoirs of Ross River virus: a systematic review of the evidence Eloise B. Stephenson1*, Alison J. Peel1, Simon A. Reid2, Cassie C. Jansen3,4 and Hamish McCallum1 Abstract: Understanding the non-human reservoirs of zoonotic pathogens is critical for effective disease control, but identifying the relative contributions of the various reservoirs of multi-host pathogens is challenging. For Ross River virus (RRV), knowledge of the transmission dynamics, in particular the role of non-human species, is important. In Australia, RRV accounts for the highest number of human mosquito-borne virus infections. The long held dogma that marsupials are better reservoirs than placental mammals, which are better reservoirs than birds, deserves critical review. We present a review of 50 years of evidence on non-human reservoirs of RRV, which includes experimental infection studies, virus isolation studies and serosurveys. We find that whilst marsupials are competent reservoirs of RRV, there is potential for placental mammals and birds to contribute to transmission dynamics. However, the role of these animals as reservoirs of RRV remains unclear due to fragmented evidence and sampling bias. Future investigations of RRV reservoirs should focus on quantifying complex transmission dynamics across environments. Keywords: Amplifier, Experimental infection, Serology, Virus isolation, Host, Vector-borne disease, Arbovirus Background transmission dynamics among arboviruses has resulted in Vertebrate reservoir hosts multiple definitions for the key term “reservoir” [9]. Given Globally, most pathogens of medical and veterinary im- the diversity of virus-vector-vertebrate host interactions, portance can infect multiple host species [1]. -
Molecular Epidemiology and Characterisation of Wesselsbron Virus and Co-Circulating Alphaviruses in Sentinel Animals in South Africa
Molecular Epidemiology and Characterisation of Wesselsbron Virus and Co-circulating Alphaviruses in Sentinel Animals in South Africa 3 4 Human S.1, Gerdes T , Stroebel J. C. , and Venter M1, 2* 1 Department of Medical Virology, Faculty of Health Sciences, University of Pretoria, South Africa; 2 National Health Laboratory Services, Tshwane Academic Division; 3 Onderstepoort Veterinary Institute, South Africa; 4 Western Cape Provincial Veterinary Laboratory * Contact person: Dr M Venter. Senior lecturer, Department of Medical Virology, Faculty of Health Sciences, University of Pretoria/NHLS Tshwane Academic Division, P.O Box 2034, Pretoria, 0001, South Africa. Tel: +27 12 319 2660, Fax: +27 12 319 5550, e-mail: [email protected], [email protected] ABSTRACT Flavi and alphaviruses are a significant cause of morbidity and mortality in both humans and animals worldwide. In order to determine the contribution of flavi and alphaviruses to unexplained neurological hepatic or fever cases in horses and other animals in South Africa, cases resembling these symptoms were screened for Flaviviruses (other than West Nile virus) and Alphaviruses. The results show that both Wesselsbron and alphaviruses (Sindbis-like and Middelburg virus) can contribute to neurological disease and fevers in horses. KEYWORDS Wesselsbron virus disease, Sindbis-like virus, Middelburg virus INTRODUCTION In South Africa (SA) the most important mosquito borne viruses are West Nile Virus (WNV) and Wesselsbron virus (Flaviviridae) and the Sindbis and Middelburg viruses (Togaviridae). These viruses are transmitted by Culex spp. (WNV and Sindbis virus) and Aedes spp. (Wesselsbron and Middelburg virus) mosquitoes. Wesselsbron (WSLB) virus was first discovered in 1955 in the Wesselsbron district of the Free State province in SA where it was isolated from an eight-day-old lamb (Weiss et al., 1956). -
A 2015 Outbreak of Getah Virus Infection Occurring Among Japanese Racehorses Sequentially to an Outbreak in 2014 at the Same
Bannai et al. BMC Veterinary Research (2016) 12:98 DOI 10.1186/s12917-016-0741-5 RESEARCH ARTICLE Open Access A 2015 outbreak of Getah virus infection occurring among Japanese racehorses sequentially to an outbreak in 2014 at the same site Hiroshi Bannai* , Akihiro Ochi, Manabu Nemoto, Koji Tsujimura, Takashi Yamanaka and Takashi Kondo Abstract Background: As we reported previously, Getah virus infection occurred in horses at the Miho training center of the Japan Racing Association in 2014. This was the first outbreak after a 31-year absence in Japan. Here, we report a recurrent outbreak of Getah virus infection in 2015, sequential to the 2014 one at the same site, and we summarize its epizootiological aspects to estimate the risk of further outbreaks in upcoming years. Results: The outbreak occurred from mid-August to late October 2015, affecting 30 racehorses with a prevalence of 1.5 % of the whole population (1992 horses). Twenty-seven (90.0 %) of the 30 affected horses were 2-year-olds, and the prevalence in 2-year-olds (27/613 [4.4 %]) was significantly higher than that in horses aged 3 years or older (3/1379 [0.2 %], P < 0.01). Therefore, the horses newly introduced from other areas at this age were susceptible, whereas most horses aged 3 years or older, which had experienced the previous outbreak in 2014, were resistant. Among the 2-year-olds, the prevalence in horses that had been vaccinated once (10/45 [22.2 %]) was significantly higher than that in horses vaccinated twice or more (17/568 [3.0 %], P < 0.01). -
Investigating the Role of Host TTR-Rbps During SFV4 and MHV-68 Infection
Investigating the role of host TTR-RBPs during SFV4 and MHV-68 infection Thesis submitted in accordance with the requirements of the University of Liverpool for the degree of Doctor in Philosophy by Jamie Casswell October 2019 Contents Figure Contents Page……………………………………………………………………………………7 Table Contents Page…………………………………………………………………………………….9 Acknowledgements……………………………………………………………………………………10 Abbreviations…………………………………………………………………………………………….11 Abstract……………………………………………………………………………………………………..17 1. Chapter 1 Introduction……………………………………………………………………………19 1.1 DNA and RNA viruses ............................................................................. 20 1.2 Taxonomy of eukaryotic viruses ............................................................. 21 1.3 Arboviruses ............................................................................................ 22 1.4 Togaviridae ............................................................................................ 22 1.4.1 Alphaviruses ............................................................................................................................. 23 1.4.1.1 Semliki Forest Virus ........................................................................................................... 25 1.4.1.2 Alphavirus virion structure and structural proteins ......................................................... 26 1.4.1.3 Alphavirus non-structural proteins ................................................................................... 29 1.4.1.4 Alphavirus genome organisation -
Following Acute Encephalitis, Semliki Forest Virus Is Undetectable in the Brain by Infectivity Assays but Functional Virus RNA C
viruses Article Following Acute Encephalitis, Semliki Forest Virus is Undetectable in the Brain by Infectivity Assays but Functional Virus RNA Capable of Generating Infectious Virus Persists for Life Rennos Fragkoudis 1,2, Catherine M. Dixon-Ballany 1, Adrian K. Zagrajek 1, Lukasz Kedzierski 3 and John K. Fazakerley 1,3,* ID 1 The Roslin Institute and Royal (Dick) School of Veterinary Studies, College of Medicine & Veterinary Medicine, University of Edinburgh, Edinburgh, Midlothian EH25 9RG, UK; [email protected] (R.F.); [email protected] (C.M.D.-B.); [email protected] (A.K.Z.) 2 The School of Veterinary Medicine and Science, the University of Nottingham, Sutton Bonington Campus, Leicestershire LE12 5RD, UK 3 Department of Microbiology and Immunology, Faculty of Medicine, Dentistry and Health Sciences at The Peter Doherty Institute for Infection and Immunity and the Melbourne Veterinary School, Faculty of Veterinary and Agricultural Sciences, the University of Melbourne, 792 Elizabeth Street, Melbourne 3000, Australia; [email protected] * Correspondence: [email protected]; Tel.: +61-3-9731-2281 Received: 25 April 2018; Accepted: 17 May 2018; Published: 18 May 2018 Abstract: Alphaviruses are mosquito-transmitted RNA viruses which generally cause acute disease including mild febrile illness, rash, arthralgia, myalgia and more severely, encephalitis. In the mouse, peripheral infection with Semliki Forest virus (SFV) results in encephalitis. With non-virulent strains, infectious virus is detectable in the brain, by standard infectivity assays, for around ten days. As we have shown previously, in severe combined immunodeficient (SCID) mice, infectious virus is detectable for months in the brain. -
NSW Arbovirus Surveillance & Mosquito Monitoring
NSW Arbovirus Surveillance & Mosquito Monitoring 2020-2021 Weekly Update: Week ending 6 February 2021 (Report Number 13) Weekly Update: 17 Summary Arbovirus Detections • Sentinel Chickens: There were no arbovirus detections in sentinel chickens. • Mosquito Isolates: There were no Ross River virus or Barmah Forest virus detections in mosquito isolates. Mosquito Abundance • Inland: HIGH at Forbes. LOW at Bourke, Leeton, Wagga Wagga and Albury. • Coast: HIGH at Ballina, Tweed and Gosford. MEDIUM at Kempsey and Narooma. LOW at Casino, Mullumbimby, Byron, Coffs Harbour, Bellingen, Port Macquarie and Wyong. • Sydney: HIGH at Penrith, Parramatta and Northern Beaches. MEDIUM at Hawkesbury, Bankstown, Georges River, Liverpool City and Sydney Olympic Park. LOW at Hills Shire, Blacktown and Canada Bay. Environmental Conditions • Climate: In the past week, there was moderate rainfall across most of NSW, with little to no rainfall in the far west and lower rainfall than usual in the northeast. Rainfall is predicted to be about usual across most of NSW in February, with higher rainfall than usual in southeastern NSW particularly in the regions including and surrounding Sydney and Canberra. Lower rainfall is expected in parts of northwest NSW bordering Queensland and South Australia. Temperatures in February are likely to be usual but above usual in the northeast along the Queensland border. • Tides: High tides over 1.8 metres are predicted to occur between 9-13 February, 26 February - 2 March and 27-31 March which could trigger hatching of Aedes vigilax. Human Arboviral Disease Notifications • Ross River Virus: 16 cases were notified in the week ending 23 January 2021. • Barmah Forest Virus: 1 case was notified in the week ending 23 January 2021. -
The Challenges Posed by Equine Arboviruses
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Repository@Nottingham 1 The challenges posed by equine arboviruses 2 Authors: 3 Gail Elaine Chapman1, Matthew Baylis1, Debra Archer1, Janet Mary Daly2 4 1Epidemiology and Population Health, Institute of Infection and Global Health, University of 5 Liverpool, Liverpool, UK. 6 2School of Veterinary Medicine and Science, University of Nottingham, Sutton Bonington, UK 7 Corresponding author: Janet Daly; [email protected] 8 Keywords: 9 Arbovirus, horse, encephalitis, vector, diagnosis 10 Word count: c.5000 words excluding references 11 Declarations 12 Ethical Animal Research 13 N/A 14 Competing Interests 15 None. 16 Source of Funding 17 G.E. Chapman’s PhD research scholarship is funded by The Horse Trust. 18 Acknowledgements 19 N/A 20 Authorship 21 GAC and JMD drafted sections of the manuscript; MB and DA reviewed and contributed to the 22 manuscript 23 1 24 Summary 25 Equine populations worldwide are at increasing risk of infection by viruses transmitted by biting 26 arthropods including mosquitoes, biting midges (Culicoides), sandflies and ticks. These include the 27 flaviviruses (Japanese encephalitis, West Nile and Murray Valley encephalitis), alphaviruses (eastern, 28 western and Venezuelan encephalitis) and the orbiviruses (African horse sickness and equine 29 encephalosis). This review provides an overview of the challenges faced in the surveillance, prevention 30 and control of the major equine arboviruses, particularly in the context of these viruses emerging in 31 new regions of the world. 32 Introduction 33 The rate of emergence of infectious diseases, in particular vector-borne viral diseases such as dengue, 34 chikungunya, Zika, Rift Valley fever, West Nile, Schmallenberg and bluetongue, is increasing globally 35 in human and animal species for a variety of reasons [1]. -
Replication of Semliki Forest Virus: Polyadenylate in Plus- Strand RNA and Polyuridylate in Minus-Strand RNA
JOURNAL OF VIROLOGY, Nov. 1976, p. 446-464 Vol. 20, No. 2 Copyright X) 1976 American Society for Microbiology Printed in U.S.A. Replication of Semliki Forest Virus: Polyadenylate in Plus- Strand RNA and Polyuridylate in Minus-Strand RNA DOROTHEA L. SAWICKI* AND PETER J. GOMATOS Division of Virology, The Sloan-Kettering Institute, New York, New York 10021 Received for publication 4 June 1976 The 42S RNA from Semliki Forest virus contains a polyadenylate [poly(A)] sequence that is 80 to 90 residues long and is the 3'-terminus of the virion RNA. A poly(A) sequence of the same length was found in the plus strand of the replicative forms (RFs) and replicative intermediates (RIs) isolated 2 h after infection. In addition, both RFs and RIs contained a polyuridylate [poly(U)] sequence. No poly(U) was found in virion RNA, and thus the poly(U) sequence is in minus-strand RNA. The poly(U) from RFs was on the average 60 residues long, whereas that isolated from the RIs was 80 residues long. Poly(U) sequences isolated from RFs and RIs by digestion with RNase Ti contained 5'-phosphoryl- ated pUp and ppUp residues, indicating that the poly(U) sequence was the 5'- terminus of the minus-strand RNA. The poly(U) sequence in RFs or RIs was free to bind to poly(A)-Sepharose only after denaturation of the RNAs, indicating that the poly(U) was hydrogen bonded to the poly(A) at the 3'-terminus of the plus-strand RNA in these molecules. When treated with 0.02 g.g of RNase A per ml, both RFs and RIs yielded the same distribution of the three cores, RFI, RFII, and RFIII. -
Eastern Equine Encephalitis (EEE) Description
Eastern Equine Importance Eastern, Western, and Venezuelan equine encephalomyelitis are mosquito-borne, Encephalomyelitis, viral infections that can cause severe encephalitis in horses and humans. Some of Western Equine these viruses also cause disease occasionally in other mammals and birds. No specific treatment is available, and depending on the virus and host, the case fatality rate may Encephalomyelitis and be as high as 90%. As a result of vaccination, severe Eastern (EEE) and Western (WEE) equine encephalomyelitis epidemics no longer occur regularly in the U.S., but Venezuelan Equine sporadic cases and small outbreaks are still seen. Epidemic Venezuelan equine Encephalomyelitis encephalomyelitis (VEE) viruses continue to emerge periodically in South America, and sweep through equine and human populations. One two-year VEE epidemic, Sleeping Sickness which began in 1969, extended from South America to the southern U.S., and caused an estimated 38,000-50,000 cases in equids. Epidemic VEE viruses are also potential Eastern Equine Encephalomyelitis bioterrorist weapons. (EEE) –Eastern Equine Encephalitis, Eastern Encephalitis Etiology Eastern, Western and Venezuelan equine encephalomyelitis result from infection Western Equine Encephalomyelitis by the respectively named viruses in the genus Alphavirus (family Togaviridae). In (WEE) –Western Equine Encephalitis the human literature, the disease is usually called Eastern, Western or Venezuelan equine encephalitis rather than encephalomyelitis. Venezuelan Equine Encephalomyelitis (VEE) –Peste Loca, Venezuelan Equine Eastern equine encephalomyelitis virus Encephalitis, Venezuelan Encephalitis, The numerous isolates of the Eastern equine encephalomyelitis virus (EEEV) can Venezuelan Equine Fever be grouped into two variants. The variant found in North America is more pathogenic than the variant that occurs in South and Central America.