Medical Aspects of Biological Warfare
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Evolutionary Relationships and Systematics of the Alphaviruses ANN M
JOURNAL OF VIROLOGY, Nov. 2001, p. 10118–10131 Vol. 75, No. 21 0022-538X/01/$04.00ϩ0 DOI: 10.1128/JVI.75.21.10118–10131.2001 Copyright © 2001, American Society for Microbiology. All Rights Reserved. Evolutionary Relationships and Systematics of the Alphaviruses ANN M. POWERS,1,2† AARON C. BRAULT,1† YUKIO SHIRAKO,3‡ ELLEN G. STRAUSS,3 1 3 1 WENLI KANG, JAMES H. STRAUSS, AND SCOTT C. WEAVER * Department of Pathology and Center for Tropical Diseases, University of Texas Medical Branch, Galveston, Texas 77555-06091; Division of Vector-Borne Infectious Diseases, Centers for Disease Control and Prevention, Fort Collins, Colorado2; and Division of Biology, California Institute of Technology, Pasadena, California 911253 Received 1 May 2001/Accepted 8 August 2001 Partial E1 envelope glycoprotein gene sequences and complete structural polyprotein sequences were used to compare divergence and construct phylogenetic trees for the genus Alphavirus. Tree topologies indicated that the mosquito-borne alphaviruses could have arisen in either the Old or the New World, with at least two transoceanic introductions to account for their current distribution. The time frame for alphavirus diversifi- cation could not be estimated because maximum-likelihood analyses indicated that the nucleotide substitution rate varies considerably across sites within the genome. While most trees showed evolutionary relationships consistent with current antigenic complexes and species, several changes to the current classification are proposed. The recently identified fish alphaviruses salmon pancreas disease virus and sleeping disease virus appear to be variants or subtypes of a new alphavirus species. Southern elephant seal virus is also a new alphavirus distantly related to all of the others analyzed. -
A Zika Virus Envelope Mutation Preceding the 2015 Epidemic Enhances Virulence and Fitness for Transmission
A Zika virus envelope mutation preceding the 2015 epidemic enhances virulence and fitness for transmission Chao Shana,b,1,2, Hongjie Xiaa,1, Sherry L. Hallerc,d,e, Sasha R. Azarc,d,e, Yang Liua, Jianying Liuc,d, Antonio E. Muruatoc, Rubing Chenc,d,e,f, Shannan L. Rossic,d,f, Maki Wakamiyaa, Nikos Vasilakisd,f,g,h,i, Rongjuan Peib, Camila R. Fontes-Garfiasa, Sanjay Kumar Singhj, Xuping Xiea, Scott C. Weaverc,d,e,k,l,2, and Pei-Yong Shia,d,e,k,l,2 aDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX 77555; bState Key Laboratory of Virology, Wuhan Institute of Virology, Chinese Academy of Sciences, 430071 Wuhan, China; cDepartment of Microbiology and Immunology, University of Texas Medical Branch, Galveston, TX 77555; dInstitute for Human Infections and Immunity, University of Texas Medical Branch, Galveston, TX 77555; eInstitute for Translational Science, University of Texas Medical Branch, Galveston, TX 77555; fDepartment of Pathology, University of Texas Medical Branch, Galveston, TX 77555; gWorld Reference Center of Emerging Viruses and Arboviruses, University of Texas Medical Branch, Galveston, TX 77555; hCenter for Biodefence and Emerging Infectious Diseases, University of Texas Medical Branch, Galveston, TX 77555; iCenter for Tropical Diseases, University of Texas Medical Branch, Galveston, TX 77555; jDepartment of Neurosurgery-Research, The University of Texas MD Anderson Cancer Center, Houston, TX 77030; kSealy Institute for Vaccine Sciences, University of Texas Medical Branch, Galveston, TX 77555; and lSealy Center for Structural Biology and Molecular Biophysics, University of Texas Medical Branch, Galveston, TX 77555 Edited by Peter Palese, Icahn School of Medicine at Mount Sinai, New York, NY, and approved July 2, 2020 (received for review March 26, 2020) Arboviruses maintain high mutation rates due to lack of proof- recently been shown to orchestrate flavivirus assembly through reading ability of their viral polymerases, in some cases facilitating recruiting structural proteins and viral RNA (8, 9). -
Temperature-Sensitive Mutants of Sindbis Virus: Complementation Group F Mutants Have Lesions in Nsp4 YOUNG S
JOURNAL OF VIROLOGY, Mar. 1989, p. 1194-1202 Vol. 63, No. 3 0022-538X/89/031194-09$02.00/0 Copyright © 1989, American Society for Microbiology Mapping of RNA- Temperature-Sensitive Mutants of Sindbis Virus: Complementation Group F Mutants Have Lesions in nsP4 YOUNG S. HAHN,' ARASH GRAKOUI,2 CHARLES M. RICE,2 ELLEN G. STRAUSS,' AND JAMES H. STRAUSS'* Division ofBiology, California Institute of Technology, Pasadena, California 91125,1 and Department of Microbiology and Immunology, Washington University, St. Louis, Missouri 631102 Received 24 October 1988/Accepted 28 November 1988 Temperature-sensitive (ts) mutants of Sindbis virus belonging to complementation group F, ts6, tsllO, and ts118, are defective in RNA synthesis at the nonpermissive temperature. cDNA clones of these group F mutants, as well as of ts+ revertants, have been constructed. To assign the ts phenotype to a specific region in the viral genome, restriction fragments from the mutant cDNA clones were used to replace the corresponding regions of the full-length clone Totol101 of Sindbis virus. These hybrid plasmids were transcribed in vitro by SP6 RNA polymerase to produce infectious transcripts, and the virus recovered was tested for temperature sensitivity. After the ts lesion of each mutant was mapped to a specific region of 400 to 800 nucleotides by this approach, this region of the cDNA clones of both the ts mutant and ts+ revertants was sequenced in order to determine the precise nucleotide change and amino acid substitution responsible for each mutation. Rescued mutants, which have a uniform background except for one or two defined changes, were examined for viral RNA synthesis and complementation to show that the phenotypes observed were the result of the mutations mapped. -
Guide for Common Viral Diseases of Animals in Louisiana
Sampling and Testing Guide for Common Viral Diseases of Animals in Louisiana Please click on the species of interest: Cattle Deer and Small Ruminants The Louisiana Animal Swine Disease Diagnostic Horses Laboratory Dogs A service unit of the LSU School of Veterinary Medicine Adapted from Murphy, F.A., et al, Veterinary Virology, 3rd ed. Cats Academic Press, 1999. Compiled by Rob Poston Multi-species: Rabiesvirus DCN LADDL Guide for Common Viral Diseases v. B2 1 Cattle Please click on the principle system involvement Generalized viral diseases Respiratory viral diseases Enteric viral diseases Reproductive/neonatal viral diseases Viral infections affecting the skin Back to the Beginning DCN LADDL Guide for Common Viral Diseases v. B2 2 Deer and Small Ruminants Please click on the principle system involvement Generalized viral disease Respiratory viral disease Enteric viral diseases Reproductive/neonatal viral diseases Viral infections affecting the skin Back to the Beginning DCN LADDL Guide for Common Viral Diseases v. B2 3 Swine Please click on the principle system involvement Generalized viral diseases Respiratory viral diseases Enteric viral diseases Reproductive/neonatal viral diseases Viral infections affecting the skin Back to the Beginning DCN LADDL Guide for Common Viral Diseases v. B2 4 Horses Please click on the principle system involvement Generalized viral diseases Neurological viral diseases Respiratory viral diseases Enteric viral diseases Abortifacient/neonatal viral diseases Viral infections affecting the skin Back to the Beginning DCN LADDL Guide for Common Viral Diseases v. B2 5 Dogs Please click on the principle system involvement Generalized viral diseases Respiratory viral diseases Enteric viral diseases Reproductive/neonatal viral diseases Back to the Beginning DCN LADDL Guide for Common Viral Diseases v. -
Identification of Eilat Virus and Prevalence of Infection Among
Virology 530 (2019) 85–88 Contents lists available at ScienceDirect Virology journal homepage: www.elsevier.com/locate/virology Identification of Eilat virus and prevalence of infection among Culex pipiens L. populations, Morocco, 2016 T Amal Bennounaa,1, Patricia Gilb,c,1, Hicham El Rhaffoulid, Antoni Exbrayatb,c, Etienne Loireb,c, ⁎ ⁎⁎ Thomas Balenghiena,b,c, Ghita Chlyehe, Serafin Gutierrezb,c, , Ouafaa Fassi Fihria, a Department of animal pathology and public health. Hassan II Agronomy & Veterinary Medicine Institute, Rabat, Morocco b CIRAD, UMR ASTRE, F-34398 Montpellier, France c ASTRE, CIRAD, INRA, Univ Montpellier, Montpellier, France d Veterinary Division, FAR Military Health Service, Meknes, Morocco e Département de Production, Protection et Biotechnologies Végétales, Unité de Zoologie, Hassan II Agronomy and Veterinary Medicine Institute, Rabat, Morocco ARTICLE INFO ABSTRACT Keywords: Eilat virus (EILV) is described as one of the few alphaviruses restricted to insects. We report the record of a Eilat virus nearly-complete sequence of an alphavirus genome showing 95% identity with EILV during a metagenomic Alphavirus analysis performed on 1488 unblood-fed females and 1076 larvae of the mosquito Culex pipiens captured in Culex pipiens Rabat (Morocco). Genetic distance and phylogenetic analyses placed the EILV-Morocco as a variant of EILV. The Morocco observed infection rates in both larvae and adults suggested an active circulation of the virus in Rabat and its maintenance in the environment either through vertical transmission or through horizontal infection of larvae in breeding sites. This is the first report of EILV out of Israel and in Culex pipiens populations. 1. Introduction from May to September 2016. -
Molecular Epidemiology and Characterisation of Wesselsbron Virus and Co-Circulating Alphaviruses in Sentinel Animals in South Africa
Molecular Epidemiology and Characterisation of Wesselsbron Virus and Co-circulating Alphaviruses in Sentinel Animals in South Africa 3 4 Human S.1, Gerdes T , Stroebel J. C. , and Venter M1, 2* 1 Department of Medical Virology, Faculty of Health Sciences, University of Pretoria, South Africa; 2 National Health Laboratory Services, Tshwane Academic Division; 3 Onderstepoort Veterinary Institute, South Africa; 4 Western Cape Provincial Veterinary Laboratory * Contact person: Dr M Venter. Senior lecturer, Department of Medical Virology, Faculty of Health Sciences, University of Pretoria/NHLS Tshwane Academic Division, P.O Box 2034, Pretoria, 0001, South Africa. Tel: +27 12 319 2660, Fax: +27 12 319 5550, e-mail: [email protected], [email protected] ABSTRACT Flavi and alphaviruses are a significant cause of morbidity and mortality in both humans and animals worldwide. In order to determine the contribution of flavi and alphaviruses to unexplained neurological hepatic or fever cases in horses and other animals in South Africa, cases resembling these symptoms were screened for Flaviviruses (other than West Nile virus) and Alphaviruses. The results show that both Wesselsbron and alphaviruses (Sindbis-like and Middelburg virus) can contribute to neurological disease and fevers in horses. KEYWORDS Wesselsbron virus disease, Sindbis-like virus, Middelburg virus INTRODUCTION In South Africa (SA) the most important mosquito borne viruses are West Nile Virus (WNV) and Wesselsbron virus (Flaviviridae) and the Sindbis and Middelburg viruses (Togaviridae). These viruses are transmitted by Culex spp. (WNV and Sindbis virus) and Aedes spp. (Wesselsbron and Middelburg virus) mosquitoes. Wesselsbron (WSLB) virus was first discovered in 1955 in the Wesselsbron district of the Free State province in SA where it was isolated from an eight-day-old lamb (Weiss et al., 1956). -
Characterization of the Rubella Virus Nonstructural Protease Domain and Its Cleavage Site
JOURNAL OF VIROLOGY, July 1996, p. 4707–4713 Vol. 70, No. 7 0022-538X/96/$04.0010 Copyright q 1996, American Society for Microbiology Characterization of the Rubella Virus Nonstructural Protease Domain and Its Cleavage Site 1 2 2 1 JUN-PING CHEN, JAMES H. STRAUSS, ELLEN G. STRAUSS, AND TERYL K. FREY * Department of Biology, Georgia State University, Atlanta, Georgia 30303,1 and Division of Biology, California Institute of Technology, Pasadena, California 911252 Received 27 October 1995/Accepted 3 April 1996 The region of the rubella virus nonstructural open reading frame that contains the papain-like cysteine protease domain and its cleavage site was expressed with a Sindbis virus vector. Cys-1151 has previously been shown to be required for the activity of the protease (L. D. Marr, C.-Y. Wang, and T. K. Frey, Virology 198:586–592, 1994). Here we show that His-1272 is also necessary for protease activity, consistent with the active site of the enzyme being composed of a catalytic dyad consisting of Cys-1151 and His-1272. By means of radiochemical amino acid sequencing, the site in the polyprotein cleaved by the nonstructural protease was found to follow Gly-1300 in the sequence Gly-1299–Gly-1300–Gly-1301. Mutagenesis studies demonstrated that change of Gly-1300 to alanine or valine abrogated cleavage. In contrast, Gly-1299 and Gly-1301 could be changed to alanine with retention of cleavage, but a change to valine abrogated cleavage. Coexpression of a construct that contains a cleavage site mutation (to serve as a protease) together with a construct that contains a protease mutation (to serve as a substrate) failed to reveal trans cleavage. -
Validation of the Easyscreen Flavivirus Dengue Alphavirus Detection Kit
RESEARCH ARTICLE Validation of the easyscreen flavivirus dengue alphavirus detection kit based on 3base amplification technology and its application to the 2016/17 Vanuatu dengue outbreak 1 1 1 2 2 Crystal Garae , Kalkoa Kalo , George Junior Pakoa , Rohan Baker , Phill IsaacsID , 2 Douglas Spencer MillarID * a1111111111 1 Vila Central Hospital, Port Vila, Vanuatu, 2 Genetic Signatures, Sydney, Australia a1111111111 a1111111111 * [email protected] a1111111111 a1111111111 Abstract Background OPEN ACCESS The family flaviviridae and alphaviridae contain a diverse group of pathogens that cause sig- Citation: Garae C, Kalo K, Pakoa GJ, Baker R, nificant morbidity and mortality worldwide. Diagnosis of the virus responsible for disease is Isaacs P, Millar DS (2020) Validation of the easyscreen flavivirus dengue alphavirus detection essential to ensure patients receive appropriate clinical management. Very few real-time kit based on 3base amplification technology and its RT-PCR based assays are able to detect the presence of all members of these families application to the 2016/17 Vanuatu dengue using a single primer and probe set. We have developed a novel chemistry, 3base, which outbreak. PLoS ONE 15(1): e0227550. https://doi. org/10.1371/journal.pone.0227550 simplifies the viral nucleic acids allowing the design of RT-PCR assays capable of pan-fam- ily identification. Editor: Abdallah M. Samy, Faculty of Science, Ain Shams University (ASU), EGYPT Methodology/Principal finding Received: April 11, 2019 Synthetic constructs, viral nucleic acids, intact viral particles and characterised reference Accepted: December 16, 2019 materials were used to determine the specificity and sensitivity of the assays. Synthetic con- Published: January 17, 2020 structs demonstrated the sensitivities of the pan-flavivirus detection component were in the Copyright: © 2020 Garae et al. -
Investigating the Role of Host TTR-Rbps During SFV4 and MHV-68 Infection
Investigating the role of host TTR-RBPs during SFV4 and MHV-68 infection Thesis submitted in accordance with the requirements of the University of Liverpool for the degree of Doctor in Philosophy by Jamie Casswell October 2019 Contents Figure Contents Page……………………………………………………………………………………7 Table Contents Page…………………………………………………………………………………….9 Acknowledgements……………………………………………………………………………………10 Abbreviations…………………………………………………………………………………………….11 Abstract……………………………………………………………………………………………………..17 1. Chapter 1 Introduction……………………………………………………………………………19 1.1 DNA and RNA viruses ............................................................................. 20 1.2 Taxonomy of eukaryotic viruses ............................................................. 21 1.3 Arboviruses ............................................................................................ 22 1.4 Togaviridae ............................................................................................ 22 1.4.1 Alphaviruses ............................................................................................................................. 23 1.4.1.1 Semliki Forest Virus ........................................................................................................... 25 1.4.1.2 Alphavirus virion structure and structural proteins ......................................................... 26 1.4.1.3 Alphavirus non-structural proteins ................................................................................... 29 1.4.1.4 Alphavirus genome organisation -
Following Acute Encephalitis, Semliki Forest Virus Is Undetectable in the Brain by Infectivity Assays but Functional Virus RNA C
viruses Article Following Acute Encephalitis, Semliki Forest Virus is Undetectable in the Brain by Infectivity Assays but Functional Virus RNA Capable of Generating Infectious Virus Persists for Life Rennos Fragkoudis 1,2, Catherine M. Dixon-Ballany 1, Adrian K. Zagrajek 1, Lukasz Kedzierski 3 and John K. Fazakerley 1,3,* ID 1 The Roslin Institute and Royal (Dick) School of Veterinary Studies, College of Medicine & Veterinary Medicine, University of Edinburgh, Edinburgh, Midlothian EH25 9RG, UK; [email protected] (R.F.); [email protected] (C.M.D.-B.); [email protected] (A.K.Z.) 2 The School of Veterinary Medicine and Science, the University of Nottingham, Sutton Bonington Campus, Leicestershire LE12 5RD, UK 3 Department of Microbiology and Immunology, Faculty of Medicine, Dentistry and Health Sciences at The Peter Doherty Institute for Infection and Immunity and the Melbourne Veterinary School, Faculty of Veterinary and Agricultural Sciences, the University of Melbourne, 792 Elizabeth Street, Melbourne 3000, Australia; [email protected] * Correspondence: [email protected]; Tel.: +61-3-9731-2281 Received: 25 April 2018; Accepted: 17 May 2018; Published: 18 May 2018 Abstract: Alphaviruses are mosquito-transmitted RNA viruses which generally cause acute disease including mild febrile illness, rash, arthralgia, myalgia and more severely, encephalitis. In the mouse, peripheral infection with Semliki Forest virus (SFV) results in encephalitis. With non-virulent strains, infectious virus is detectable in the brain, by standard infectivity assays, for around ten days. As we have shown previously, in severe combined immunodeficient (SCID) mice, infectious virus is detectable for months in the brain. -
The Open Virology Journal
Send Orders for Reprints to [email protected] 80 The Open Virology Journal Content list available at: www.benthamopen.com/TOVJ/ DOI: 10.2174/1874357901812010080, 2018, 12, (Suppl-2, M5) 80-98 REVIEW ARTICLE Zoonotic Viral Diseases of Equines and Their Impact on Human and Animal Health Balvinder Kumar*, Anju Manuja, BR Gulati, Nitin Virmani and B.N. Tripathi ICAR-National Research Centre on Equines, Hisar-125001, India Received: April 25, 2017 Revised: March 14, 2018 Accepted: May 15, 2018 Abstract: Introduction: Zoonotic diseases are the infectious diseases that can be transmitted to human beings and vice versa from animals either directly or indirectly. These diseases can be caused by a range of organisms including bacteria, parasites, viruses and fungi. Viral diseases are highly infectious and capable of causing pandemics as evidenced by outbreaks of diseases like Ebola, Middle East Respiratory Syndrome, West Nile, SARS-Corona, Nipah, Hendra, Avian influenza and Swine influenza. Expalantion: Many viruses affecting equines are also important human pathogens. Diseases like Eastern equine encephalitis (EEE), Western equine encephalitis (WEE), and Venezuelan-equine encephalitis (VEE) are highly infectious and can be disseminated as aerosols. A large number of horses and human cases of VEE with fatal encephalitis have continuously occurred in Venezuela and Colombia. Vesicular stomatitis (VS) is prevalent in horses in North America and has zoonotic potential causing encephalitis in children. Hendra virus (HeV) causes respiratory and neurological disease and death in man and horses. Since its first outbreak in 1994, 53 disease incidents have been reported in Australia. West Nile fever has spread to many newer territories across continents during recent years. -
Infectious Dnas Derived from Insect-Specific Flavivirus
www.nature.com/scientificreports Corrected: Author Correction OPEN Infectious DNAs derived from insect-specifc favivirus genomes enable identifcation of pre- and Received: 10 January 2017 Accepted: 24 April 2017 post-entry host restrictions in Published online: 07 June 2017 vertebrate cells Thisun B. H. Piyasena , Yin X. Setoh, Jody Hobson-Peters, Natalee D. Newton, Helle Bielefeldt-Ohmann, Breeanna J. McLean, Laura J. Vet, Alexander A. Khromykh & Roy A. Hall Flaviviruses such as West Nile virus (WNV), dengue virus and Zika virus are mosquito-borne pathogens that cause signifcant human diseases. A novel group of insect-specifc faviviruses (ISFs), which only replicate in mosquitoes, have also been identifed. However, little is known about the mechanisms of ISF host restriction. We report the generation of infectious cDNA from two Australian ISFs, Parramatta River virus (PaRV) and Palm Creek virus (PCV). Using circular polymerase extension cloning (CPEC) with a modifed OpIE2 insect promoter, infectious cDNA was generated and transfected directly into mosquito cells to produce infectious virus indistinguishable from wild-type virus. When infectious PaRV cDNA under transcriptional control of a mammalian promoter was used to transfect mouse embryo fbroblasts, the virus failed to initiate replication even when cell entry steps were by-passed and the type I interferon response was lacking. We also used CPEC to generate viable chimeric viruses between PCV and WNV. Analysis of these hybrid viruses revealed that ISFs are also restricted from replication in vertebrate cells at the point of entry. The approaches described here to generate infectious ISF DNAs and chimeric viruses provide unique tools to further dissect the mechanisms of their host restriction.