Evolution Through the Search for Novelty
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Natural Selection and Coalescent Theory
Natural Selection and Coalescent Theory John Wakeley Harvard University INTRODUCTION The story of population genetics begins with the publication of Darwin’s Origin of Species and the tension which followed concerning the nature of inheritance. Today, workers in this field aim to understand the forces that produce and maintain genetic variation within and between species. For this we use the most direct kind of genetic data: DNA sequences, even entire genomes. Our “Great Obsession” with explaining genetic variation (Gillespie, 2004a) can be traced back to Darwin’s recognition that natural selection can occur only if individuals of a species vary, and this variation is heritable. Darwin might have been surprised that the importance of natural selection in shaping variation at the molecular level would be de-emphasized, beginning in the late 1960s, by scientists who readily accepted the fact and importance of his theory (Kimura, 1983). The motivation behind this chapter is the possible demise of this Neutral Theory of Molecular Evolution, which a growing number of population geneticists feel must follow recent observations of genetic variation within and between species. One hundred fifty years after the publication of the Origin, we are struggling to fully incorporate natural selection into the modern, genealogical models of population genetics. The main goal of this chapter is to present the mathematical models that have been used to describe the effects of positive selective sweeps on genetic variation, as mediated by gene genealogies, or coalescent trees. Background material, comprised of population genetic theory and simulation results, is provided in order to facilitate an understanding of these models. -
Science Fiction Stories with Good Astronomy & Physics
Science Fiction Stories with Good Astronomy & Physics: A Topical Index Compiled by Andrew Fraknoi (U. of San Francisco, Fromm Institute) Version 7 (2019) © copyright 2019 by Andrew Fraknoi. All rights reserved. Permission to use for any non-profit educational purpose, such as distribution in a classroom, is hereby granted. For any other use, please contact the author. (e-mail: fraknoi {at} fhda {dot} edu) This is a selective list of some short stories and novels that use reasonably accurate science and can be used for teaching or reinforcing astronomy or physics concepts. The titles of short stories are given in quotation marks; only short stories that have been published in book form or are available free on the Web are included. While one book source is given for each short story, note that some of the stories can be found in other collections as well. (See the Internet Speculative Fiction Database, cited at the end, for an easy way to find all the places a particular story has been published.) The author welcomes suggestions for additions to this list, especially if your favorite story with good science is left out. Gregory Benford Octavia Butler Geoff Landis J. Craig Wheeler TOPICS COVERED: Anti-matter Light & Radiation Solar System Archaeoastronomy Mars Space Flight Asteroids Mercury Space Travel Astronomers Meteorites Star Clusters Black Holes Moon Stars Comets Neptune Sun Cosmology Neutrinos Supernovae Dark Matter Neutron Stars Telescopes Exoplanets Physics, Particle Thermodynamics Galaxies Pluto Time Galaxy, The Quantum Mechanics Uranus Gravitational Lenses Quasars Venus Impacts Relativity, Special Interstellar Matter Saturn (and its Moons) Story Collections Jupiter (and its Moons) Science (in general) Life Elsewhere SETI Useful Websites 1 Anti-matter Davies, Paul Fireball. -
The Drink Tank Sixth Annual Giant Sized [email protected]: James Bacon & Chris Garcia
The Drink Tank Sixth Annual Giant Sized Annual [email protected] Editors: James Bacon & Chris Garcia A Noise from the Wind Stephen Baxter had got me through the what he’ll be doing. I first heard of Stephen Baxter from Jay night. So, this is the least Giant Giant Sized Crasdan. It was a night like any other, sitting in I remember reading Ring that next Annual of The Drink Tank, but still, I love it! a room with a mostly naked former ballerina afternoon when I should have been at class. I Dedicated to Mr. Stephen Baxter. It won’t cover who was in the middle of what was probably finished it in less than 24 hours and it was such everything, but it’s a look at Baxter’s oevre and her fifth overdose in as many months. This was a blast. I wasn’t the big fan at that moment, the effect he’s had on his readers. I want to what we were dealing with on a daily basis back though I loved the novel. I had to reread it, thank Claire Brialey, M Crasdan, Jay Crasdan, then. SaBean had been at it again, and this time, and then grabbed a copy of Anti-Ice a couple Liam Proven, James Bacon, Rick and Elsa for it was up to me and Jay to clean up the mess. of days later. Perhaps difficult times made Ring everything! I had a blast with this one! Luckily, we were practiced by this point. Bottles into an excellent escape from the moment, and of water, damp washcloths, the 9 and the first something like a month later I got into it again, 1 dialed just in case things took a turn for the and then it hit. -
The Evolution Trilogy
1 The Evolution Trilogy Todd Borho 2 Contents Part 1 – James Bong Series - 4 Part 2 – SeAgora Novel - 184 Part 3 – Agora One Novel - 264 3 James Bong Premise: Anarchism, action, and comedy blended into a spoof of the James Bond franchise. Setting: Year: 2028 Characters and Locations: James Bong – Former MI6 asset for special operations. Now an anarchist committed to freeing people from statist hands. 30 years old, well built, steely gray eyes, dirty blond hair. Bong moves frequently. K – Nerdy anarchist hacker in his early twenties based in Acapulco, Mexico. Miss Moneybit – Feisty, attractive blogger in her late twenties and based in Washington, DC. General Small - Bumbling and incompetent General. Former Army Intel and now with the CIA. Sir Hugo Trax – MI6 officer who was involved in training and controlling Bong during Bong’s MI6 days. Episode 1 – Part 1 Scene 1 Bong is driving at a scorching speed down a desert highway in a black open-source 3D printed vehicle modeled after the Acura NSX. K’s voice: Bong! Bong (narrows eyes at encrypted blockchain based smartwatch): K, what the hell? I had my watch off! K (proud, sitting in his ridiculously overstuffed highback office chair): I know, I turned it on remotely. I’ve got great news! Bong (looking ahead at the cop car and the cop’s victim on the side of the road): Kinda busy right now. K (twirling in his chair): It can’t wait! It’s a go! It’s a go! I’m so excited! Bong (sarcastically): You’re breaking up on me. -
The Numinous in Gothic and Post-Gothic Ghost Experience
University of Connecticut OpenCommons@UConn Honors Scholar Theses Honors Scholar Program Spring 5-6-2012 Evolution of Effect: The uminouN s in Gothic and Post-Gothic Ghost Experience Literature Ryan P. Kennedy University of Connecticut - Storrs, [email protected] Follow this and additional works at: https://opencommons.uconn.edu/srhonors_theses Part of the English Language and Literature Commons Recommended Citation Kennedy, Ryan P., "Evolution of Effect: The uminousN in Gothic and Post-Gothic Ghost Experience Literature" (2012). Honors Scholar Theses. 252. https://opencommons.uconn.edu/srhonors_theses/252 Kennedy 1 Evolution of Effect: The Numinous in Gothic and Post-Gothic Ghost Experience Literature by Ryan P. Kennedy A Thesis submitted to the Honors Department, University of Connecticut In Partial Fulfillment of the Requirements for The Honors B.A. Degree in English Storrs, Connecticut April 2012 Kennedy 2 The earliest instances of Gothic fiction can best be described as the guilty pleasures of a self-congratulatory period of Enlightenment. The empiricism of thinkers like John Locke had come to dominant acceptance, and the belief was that the reproducible evidence of the senses was the only thing that could be upheld as truth. In this sort of atmosphere, seemingly spectral appearances were written off; the belief was that, if a spirit would not kindly consent to the demands of scientific rigor, then there was no reason to entertain their existence. E.J. Clery, author of several books on the rise of the Gothic school and the development of supernatural fiction offers an explanation for the change in perspective in regards to ghostly subject matter: “It is as though the urban relocation of the supernatural has effected a change in the very nature of superstition. -
Acoustic Behavior and Ecology of the Resplendent Quetzal Pharomachrus Mocinno, a Flagship Tropical Bird Species Pablo Rafael Bolanos Sittler
Acoustic behavior and ecology of the Resplendent Quetzal Pharomachrus mocinno, a flagship tropical bird species Pablo Rafael Bolanos Sittler To cite this version: Pablo Rafael Bolanos Sittler. Acoustic behavior and ecology of the Resplendent Quetzal Pharomachrus mocinno, a flagship tropical bird species. Biodiversity and Ecology. Museum national d’histoire naturelle - MNHN PARIS, 2019. English. NNT : 2019MNHN0001. tel-02048769 HAL Id: tel-02048769 https://tel.archives-ouvertes.fr/tel-02048769 Submitted on 25 Feb 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. MUSEUM NATIONAL D’HISTOIRE NATURELLE Ecole Doctorale Sciences de la Nature et de l’Homme – ED 227 Année 2019 N°attribué par la bibliothèque |_|_|_|_|_|_|_|_|_|_|_|_| THESE Pour obtenir le grade de DOCTEUR DU MUSEUM NATIONAL D’HISTOIRE NATURELLE Spécialité : écologie Présentée et soutenue publiquement par Pablo BOLAÑOS Le 18 janvier 2019 Acoustic behavior and ecology of the Resplendent Quetzal Pharomachrus mocinno, a flagship tropical bird species Sous la direction de : Dr. Jérôme SUEUR, Maître de Conférences, MNHN Dr. Thierry AUBIN, Directeur de Recherche, Université Paris Saclay JURY: Dr. Márquez, Rafael Senior Researcher, Museo Nacional de Ciencias Naturales, Madrid Rapporteur Dr. -
4.6 Inheritance, Variation and Evolution Higher
4.6 Inheritance, Variation Name: ________________________ and Evolution Higher Class: ________________________ Date: ________________________ Time: 405 minutes Marks: 402 marks Comments: Q1. Different antibiotics destroy bacteria in different ways. • Some antibiotics disrupt the bacterial cell membrane. • Some antibiotics disrupt the bacterial cell wall. (a) Antibiotics that disrupt the bacterial cell membrane often cause more side effects in humans compared with antibiotics that disrupt bacterial cell walls. Suggest why. ___________________________________________________________________ (1) (b) Some antibiotics prevent ribosomes functioning. Suggest how this damages the bacterium. ___________________________________________________________________ (1) (c) Drug manufacturers are spending less on research into new antibiotics. One reason why is because new antibiotics are rarely prescribed. Some people think that governments should pay drug manufacturers to develop new antibiotics. Suggest why. ___________________________________________________________________ ___________________________________________________________________ ___________________________________________________________________ ___________________________________________________________________ ___________________________________________________________________ ___________________________________________________________________ ___________________________________________________________________ (3) (Total 5 marks) Q2. The figure below shows a carp. (a) A mutation causes -
Cosmic Visions of the Future: the Science Fiction of Stephen Baxter Tom Lombardo “In My Books, I Deal with a Whole Set of Futu
Cosmic Visions of the Future: The Science Fiction of Stephen Baxter Tom Lombardo “In my books, I deal with a whole set of futures. That’s deliberate. I’d say the point of science fiction is trying to figure out the meaning of our lives. What is the meaning for humanity of this new understanding we have?” Stephen Baxter The seventeenth century philosopher Baruch Spinoza argued that reality should be viewed “through the eyes of eternity.” To get a true picture of things, look at reality in the context of the big cosmic picture. If we follow this line of thinking and apply it to the future, then we should stand back from our local and relatively short term ideas on the future, stretch our imaginative powers to the limits, and attempt to envision the most all-encompassing panoramic visions of the cosmos, both in space and time. We should also, following Spinoza, ask and consider possible answers to the big questions of life in pondering the meaning and significance of the future. In this spirit, the philosopher and science fiction writer Olaf Stapledon, in his novels The Last and First Men and Star Maker, speculated on the entire future history of humanity, the evolution of intelligence and mind within the universe until literally the end of time, the existence and nature of God, the purpose and meaning of life, and the unending quest for knowledge and enlightenment.1 Frequently compared with Stapledon, the contemporary science fiction writer Stephen Baxter not only writes on a vast cosmic scale that, in fact, exceeds Stapledon in scope, but also attempts to address in his novels, as did Stapledon, the big philosophical questions of existence. -
Evolution of Ecological Diversity in the Neotropical Tanagers of the Genus
Louisiana State University LSU Digital Commons LSU Doctoral Dissertations Graduate School 2003 Evolution of ecological diversity in the neotropical tanagers of the genus Tangara (Aves: Thraupidae) Kazuya Naoki Louisiana State University and Agricultural and Mechanical College, [email protected] Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_dissertations Recommended Citation Naoki, Kazuya, "Evolution of ecological diversity in the neotropical tanagers of the genus Tangara (Aves: Thraupidae)" (2003). LSU Doctoral Dissertations. 2021. https://digitalcommons.lsu.edu/gradschool_dissertations/2021 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Doctoral Dissertations by an authorized graduate school editor of LSU Digital Commons. For more information, please [email protected]. EVOLUTION OF ECOLOGICAL DIVERSITY IN THE NEOTROPICAL TANAGERS OF THE GENUS TANGARA (AVES: THRAUPIDAE) A Dissertation Submitted to the Graduate Faculty of the Louisiana State University and Agricultural and Mechanical College in partial fulfillment of the requirements for the degree of Doctor of Philosophy in The Department of Biological Sciences by Kazuya Naoki B.S., Universidad de Costa Rica, 1996 August 2003 ACKNOWLEDGMENTS Many people and institutions in many countries helped make this dissertation possible. First I thank my parents and my sister in Japan to understand and support my interests in tropical biology for last 14 years. Even though I have failed to get in touch with them frequently, they always showed great comprehension on my passion and love to nature and offered to support me in all possible ways. I thank my advisor, J. -
Genealogical Trees, Coalescent Theory and the Analysis of Genetic Polymorphisms
REVIEWS GENEALOGICAL TREES, COALESCENT THEORY AND THE ANALYSIS OF GENETIC POLYMORPHISMS Noah A. Rosenberg and Magnus Nordborg Improvements in genotyping technologies have led to the increased use of genetic polymorphism for inference about population phenomena, such as migration and selection. Such inference presents a challenge, because polymorphism data reflect a unique, complex, non-repeatable evolutionary history. Traditional analysis methods do not take this into account. A stochastic process known as the ‘coalescent’ presents a coherent statistical framework for analysis of genetic polymorphisms. 1 POLYMORPHISM DATA In their classic experiment, Luria and Delbrück states of the different loci are statistically dependent Data that include the genotypes observed independent runs of the evolution of phage owing to genetic linkage, and for each locus, the of many individuals sampled at resistance in bacterial populations that were initially allelic states of different haplotypes are statistically one or more loci; here we susceptible to phage infection. For each run, the fre- dependent owing to their shared ancestry. These consider a locus to be polymorphic if two or more quency of phage resistance at the end of the experi- dependencies are the result of the unique history of distinct types are observed, ment was measured. The goal was to test hypotheses mutation, recombination and COALESCENCE of lineages regardless of their frequencies. about the processes that gave rise to variation: the fre- in the ancestry of the sample. These facts must be quency of phage resistance varied considerably across incorporated if the data are to be analysed in a coher- HAPLOTYPE the runs, in a manner more consistent with the spon- ent statistical framework. -
PDF < Articles on Novels by Stephen Baxter, Including: the Time Ships, Evolution (Novel), Anti-Ice, the Light of Other Days
ZGBJ0LIIUY / Articles On Novels By Stephen Baxter, including: The Time Ships, Evolution (novel),... / PDF Articles On Novels By Stephen Baxter, including: The Time Ships, Evolution (novel), Anti- ice, The Light Of Other Days, Titan (stephen Baxter Novel), Moonseed (stephen Baxter Novel), Raft (novel), Time By Books, Hephaestus Hephaestus Books, 2016. Paperback. Book Condition: New. PRINT ON DEMAND Book; New; Publication Year 2016; Not Signed; Fast Shipping from the UK. No. book. READ ONLINE [ 4.63 MB ] Reviews I actually began looking at this pdf. It is actually rally interesting throgh reading time period. You will not really feel monotony at at any time of your respective time (that's what catalogues are for concerning if you ask me). -- Brayan Mohr Sr. A superior quality publication along with the font used was fascinating to learn. I have read through and i also am certain that i am going to going to go through yet again again in the future. Your life period will likely be enhance the instant you total reading this publication. -- Donnie Rice ODZCL0KO0Q > Articles On Novels By Stephen Baxter, including: The Time Ships, Evolution (novel),... / PDF Other PDFs New KS2 English SAT Buster 10-Minute Tests: Grammar, Punctuation & Spelling (2016 SATs & Beyond) Coordination Group Publications Ltd (CGP). Paperback. Book Condition: new. BRAND NEW, New KS2 English SAT Buster 10-Minute Tests: Grammar, Punctuation & Spelling (2016 SATs & Beyond), CGP Books, CGP Books, This book of SAT Buster 10-Minute tests is a brilliant way to... The Birds Christmas Carol.by Kate Douglas Wiggin (Illustrated) Createspace Independent Publishing Platform, United States, 2016. -
Medieval Echoes in CS Lewis's Space Trilogy
University of Arkansas, Fayetteville ScholarWorks@UARK Theses and Dissertations 12-2019 Recovered Images: Medieval Echoes in C. S. Lewis’s Space Trilogy Nathan Earl Houston Fayard University of Arkansas, Fayetteville Follow this and additional works at: https://scholarworks.uark.edu/etd Part of the Children's and Young Adult Literature Commons, Classical Literature and Philology Commons, Literature in English, British Isles Commons, and the Medieval Studies Commons Citation Fayard, N. E. (2019). Recovered Images: Medieval Echoes in C. S. Lewis’s Space Trilogy. Theses and Dissertations Retrieved from https://scholarworks.uark.edu/etd/3451 This Dissertation is brought to you for free and open access by ScholarWorks@UARK. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of ScholarWorks@UARK. For more information, please contact [email protected]. Recovered Images: Medieval Echoes in C. S. Lewis’s Space Trilogy A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in English by Nathan Earl Houston Fayard Samford University Bachelor of Arts in English, 2006 University of Illinois, Springfield Master of Arts in English, 2011 December 2019 University of Arkansas This dissertation is approved for recommendation to the Graduate Council. ________________________________ William Quinn, Ph.D. Dissertation Director ________________________________ ________________________________ Joshua Smith, Ph.D. Mary Beth Long, Ph.D. Committee Member Committee Member Abstract C. S. Lewis has begun to garner more scholarly attention in the last few decades, but his first novels, his science fiction or Space trilogy, continue to be largely ignored by academia. Yet, these three novels are deserving of more serious study, as they are pioneering works of literary science fiction, and even more surprisingly, of literary medievalism.