Nothing in Cognitive Neuroscience Makes Sense Except in the Light of Evolution
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Relaxed Selection in the Wild
TREE-1109; No of Pages 10 Review Relaxed selection in the wild David C. Lahti1, Norman A. Johnson2, Beverly C. Ajie3, Sarah P. Otto4, Andrew P. Hendry5, Daniel T. Blumstein6, Richard G. Coss7, Kathleen Donohue8 and Susan A. Foster9 1 Department of Biology, University of Massachusetts, Amherst, MA 01003, USA 2 Department of Plant, Soil, and Insect Sciences, University of Massachusetts, Amherst, MA 01003, USA 3 Center for Population Biology, University of California, Davis, CA 95616, USA 4 Department of Zoology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada 5 Redpath Museum and Department of Biology, McGill University, Montreal, QC H3A 2K6, Canada 6 Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095, USA 7 Department of Psychology, University of California, Davis, CA 95616, USA 8 Department of Biology, Duke University, Durham, NC 02138, USA 9 Department of Biology, Clark University, Worcester, MA 01610, USA Natural populations often experience the weakening or are often less clear than typical cases of trait evolution. removal of a source of selection that had been important When an environmental change results in strong selection in the maintenance of one or more traits. Here we refer to on a trait from a known source, a prediction for trait these situations as ‘relaxed selection,’ and review recent evolution often follows directly from this fact [2]. When studies that explore the effects of such changes on traits such a strong source of selection is removed, however, no in their ecological contexts. In a few systems, such as the clear prediction emerges. Rather, the likelihood of various loss of armor in stickleback, the genetic, developmental consequences can only be understood by integrating the and ecological bases of trait evolution are being discov- remaining sources of selection and processes at all levels of ered. -
The Pandemic Exposes Human Nature: 10 Evolutionary Insights PERSPECTIVE Benjamin M
PERSPECTIVE The pandemic exposes human nature: 10 evolutionary insights PERSPECTIVE Benjamin M. Seitza,1, Athena Aktipisb, David M. Bussc, Joe Alcockd, Paul Bloome, Michele Gelfandf, Sam Harrisg, Debra Liebermanh, Barbara N. Horowitzi,j, Steven Pinkerk, David Sloan Wilsonl, and Martie G. Haseltona,1 Edited by Michael S. Gazzaniga, University of California, Santa Barbara, CA, and approved September 16, 2020 (received for review June 9, 2020) Humans and viruses have been coevolving for millennia. Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2, the virus that causes COVID-19) has been particularly successful in evading our evolved defenses. The outcome has been tragic—across the globe, millions have been sickened and hundreds of thousands have died. Moreover, the quarantine has radically changed the structure of our lives, with devastating social and economic consequences that are likely to unfold for years. An evolutionary per- spective can help us understand the progression and consequences of the pandemic. Here, a diverse group of scientists, with expertise from evolutionary medicine to cultural evolution, provide insights about the pandemic and its aftermath. At the most granular level, we consider how viruses might affect social behavior, and how quarantine, ironically, could make us susceptible to other maladies, due to a lack of microbial exposure. At the psychological level, we describe the ways in which the pandemic can affect mating behavior, cooperation (or the lack thereof), and gender norms, and how we can use disgust to better activate native “behavioral immunity” to combat disease spread. At the cultural level, we describe shifting cultural norms and how we might harness them to better combat disease and the negative social consequences of the pandemic. -
Failure to Launch? the Influence of Limb Autotomy on the Escape Behavior of a Semiaquatic Grasshopper Paroxya Atlantica
Behavioral Ecology doi:10.1093/beheco/arr045 Advance Access publication 4 May 2011 Original Article Failure to launch? The influence of limb autotomy on the escape behavior of a semiaquatic grasshopper Paroxya atlantica (Acrididae) Philip W. Batemana,b,c and Patricia A. Flemingb aDepartment of Zoology and Entomology, University of Pretoria, Pretoria 0002, South Africa, bSchool of Veterinary and Biomedical Sciences, Murdoch University, Murdoch, WA 6150, Australia, and cArchbold Biological Station, Lake Placid, PO Box 2057, Lake Placid, FL 33862, USA Downloaded from Autotomy is an extreme escape tactic where an animal sheds an appendage to escape predation. Many species alter their behavior postautotomy to compensate for this loss. We examined the escape behavior in the field of a semiaquatic grasshopper (Paroxya atlantica) that could escape either by flight and landing in vegetation or flight and landing in water and swimming to safety. We predicted that animals missing a hind limb would be more reactive (i.e., have longer flight initiation distances; FID) and would beheco.oxfordjournals.org prefer to escape to vegetation rather than to water as loss of a limb is likely to reduce swimming ability. However, our predictions were not supported. FID in autotomized animals was not different from that in intact animals. Furthermore, although autotom- ized grasshoppers paused more often and swam slower than intact individuals, autotomized grasshoppers more often escaped to water, reaching it via shorter flights that were lateral to the approach of the observer (intact grasshoppers more often flew directly away from the observer). We also noted differences in behavior before disturbance: Autotomised animals perched lower on emergent vegetation than did intact ones, presumably in readiness for escape via water, and also showed a greater likelihood to at Murdoch University on June 19, 2011 hide (squirreling) from the approaching observer prior to launch into flight. -
Biological Sciences 1
Biological Sciences 1 Biological Sciences Marine Biology The Marine Biology major provides students with a strong foundation in basic biological concepts such as genetics, ecology, cell biology and marine systems as well as chemistry and mathematics. The plan of study provides the opportunity to choose elective courses from a wide variety of courses offered at Auburn University. In addition, students are required to take summer courses offered at marine labs around the United States, including Dauphin Island Sea Lab and Gulf Coast Research Lab. Students are also encouraged to consider internships and undergraduate research. Marine Biology graduates are well-prepared for advanced study in any marine science area or employment with marine labs, various governmental and nongovernmental agencies involved with coastal management and conservation, and tourism. Microbial, Cellular and Molecular Biology The Microbial, Cellular and Molecular Biology major provides students with an excellent foundation in the areas of microbiology, cellular and molecular biology that emphasizes the understanding of life at the cellular and molecular level. The choice of a formal option within the major allows students to concentrate on a particular area of interest. Each option provides a wide variety of courses and opportunities for undergraduate research. Students selecting the Microbiology option will be well prepared for postgraduate work or career advancement in a number of areas including food, environmental and medical microbiology. Students selecting the Cell and Molecular Biology option would also be well prepared for postgraduate study or career advancement in any area of eukaryotic cell or molecular biology. Both options provide excellent preparation for students interested in biotechnology or professional programs in the health sciences. -
Mantodea (Insecta), with a Review of Aspects of Functional Morphology and Biology
aua o ew eaa Ramsay, G. W. 1990: Mantodea (Insecta), with a review of aspects of functional morphology and biology. Fauna of New Zealand 19, 96 pp. Editorial Advisory Group (aoimes mae o a oaioa asis MEMBERS AT DSIR PLANT PROTECTION Mou Ae eseac Cee iae ag Aucka ew eaa Ex officio ieco — M ogwo eae Sysemaics Gou — M S ugae Co-opted from within Systematics Group Dr B. A ooway Κ Cosy UIESIIES EESEAIE R. M. Emeso Eomoogy eame ico Uiesiy Caeuy ew eaa MUSEUMS EESEAIE M R. L. ama aua isoy Ui aioa Museum o iae ag Weigo ew eaa OESEAS REPRESENTATIVE J. F. awece CSIO iisio o Eomoogy GO o 1700, Caea Ciy AC 2601, Ausaia Series Editor M C ua Sysemaics Gou SI a oecio Mou Ae eseac Cee iae ag Aucka ew eaa aua o ew eaa Number 19 Maoea (Iseca wi a eiew o asecs o ucioa mooogy a ioogy G W Ramsay SI a oecio M Ae eseac Cee iae ag Aucka ew eaa emoa us wig mooogy eosigma cooaio siuaio acousic sesiiiy eece eaiou egeeaio eaio aasiism aoogy a ie Caaoguig-i-uicaio ciaio AMSAY GW Maoea (Iseca – Weigo SI uisig 199 (aua o ew eaa ISS 111-533 ; o 19 IS -77-51-1 I ie II Seies UC 59575(931 Date of publication: see cover of subsequent numbers Suggese om o ciaio amsay GW 199 Maoea (Iseca wi a eiew o asecs o ucioa mooogy a ioogy Fauna of New Zealand [no.] 19. —— Fauna o New Zealand is eae o uicaio y e Seies Eio usig comue- ase e ocessig ayou a ase ie ecoogy e Eioia Aisoy Gou a e Seies Eio ackowege e oowig co-oeaio SI UISIG awco – sueisio o oucio a isiuio M C Maews – assisace wi oucio a makeig Ms A Wig – assisace wi uiciy a isiuio MOU AE ESEAC CEE SI Miss M oy -
Natural Selection Plays an Important Role in Shaping the Codon Usage of Structural Genes of the Viruses Belonging to the Coronaviridae Family
viruses Article Natural Selection Plays an Important Role in Shaping the Codon Usage of Structural Genes of the Viruses Belonging to the Coronaviridae Family Dimpal A. Nyayanit 1,†, Pragya D. Yadav 1,† , Rutuja Kharde 1 and Sarah Cherian 2,* 1 Maximum Containment Facility, ICMR-National Institute of Virology, Sus Road, Pashan, Pune 411021, India; [email protected] (D.A.N.); [email protected] (P.D.Y.); [email protected] (R.K.) 2 Bioinformatics Group, ICMR-National Institute of Virology, Pune 411001, India * Correspondence: [email protected] or [email protected]; Tel.: +91-20-260061213 † These authors equally contributed to this work. Abstract: Viruses belonging to the Coronaviridae family have a single-stranded positive-sense RNA with a poly-A tail. The genome has a length of ~29.9 kbps, which encodes for genes that are essential for cell survival and replication. Different evolutionary constraints constantly influence the codon usage bias (CUB) of different genes. A virus optimizes its codon usage to fit the host environment on which it savors. This study is a comprehensive analysis of the CUB for the different genes encoded by viruses of the Coronaviridae family. Different methods including relative synonymous codon usage (RSCU), an Effective number of codons (ENc), parity plot 2, and Neutrality plot, were adopted to analyze the factors responsible for the genetic evolution of the Coronaviridae family. Base composition and RSCU analyses demonstrated the presence of A-ended and U-ended codons being preferred in the 3rd codon position and are suggestive of mutational selection. The lesser ENc value for the spike ‘S’ gene suggests a higher bias in the codon usage of this gene compared to the other structural Citation: Nyayanit, D.A.; Yadav, P.D.; genes. -
Transformations of Lamarckism Vienna Series in Theoretical Biology Gerd B
Transformations of Lamarckism Vienna Series in Theoretical Biology Gerd B. M ü ller, G ü nter P. Wagner, and Werner Callebaut, editors The Evolution of Cognition , edited by Cecilia Heyes and Ludwig Huber, 2000 Origination of Organismal Form: Beyond the Gene in Development and Evolutionary Biology , edited by Gerd B. M ü ller and Stuart A. Newman, 2003 Environment, Development, and Evolution: Toward a Synthesis , edited by Brian K. Hall, Roy D. Pearson, and Gerd B. M ü ller, 2004 Evolution of Communication Systems: A Comparative Approach , edited by D. Kimbrough Oller and Ulrike Griebel, 2004 Modularity: Understanding the Development and Evolution of Natural Complex Systems , edited by Werner Callebaut and Diego Rasskin-Gutman, 2005 Compositional Evolution: The Impact of Sex, Symbiosis, and Modularity on the Gradualist Framework of Evolution , by Richard A. Watson, 2006 Biological Emergences: Evolution by Natural Experiment , by Robert G. B. Reid, 2007 Modeling Biology: Structure, Behaviors, Evolution , edited by Manfred D. Laubichler and Gerd B. M ü ller, 2007 Evolution of Communicative Flexibility: Complexity, Creativity, and Adaptability in Human and Animal Communication , edited by Kimbrough D. Oller and Ulrike Griebel, 2008 Functions in Biological and Artifi cial Worlds: Comparative Philosophical Perspectives , edited by Ulrich Krohs and Peter Kroes, 2009 Cognitive Biology: Evolutionary and Developmental Perspectives on Mind, Brain, and Behavior , edited by Luca Tommasi, Mary A. Peterson, and Lynn Nadel, 2009 Innovation in Cultural Systems: Contributions from Evolutionary Anthropology , edited by Michael J. O ’ Brien and Stephen J. Shennan, 2010 The Major Transitions in Evolution Revisited , edited by Brett Calcott and Kim Sterelny, 2011 Transformations of Lamarckism: From Subtle Fluids to Molecular Biology , edited by Snait B. -
Sirenian Feeding Apparatus: Functional Morphology of Feeding Involving Perioral Bristles and Associated Structures
THE SIRENIAN FEEDING APPARATUS: FUNCTIONAL MORPHOLOGY OF FEEDING INVOLVING PERIORAL BRISTLES AND ASSOCIATED STRUCTURES By CHRISTOPHER DOUGLAS MARSHALL A DISSERTATION PRESENTED TO THE GRADUATE SCHOOL OF THE UNrVERSITY OF FLORIDA IN PARTIAL FULFILLMENT OF THE REOUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY UNIVERSITY OF FLORIDA 1997 DEDICATION to us simply as I dedicate this work to the memory of J. Rooker (known "Rooker") and to sirenian conservation. Rooker was a subject involved in the study during the 1993 sampling year at Lowry Park Zoological Gardens. Rooker died during the red tide event in May of 1996; approximately 140 other manatees also died. During his rehabilitation at Lowry Park Zoo, Rooker provided much information regarding the mechanism of manatee feeding and use of the perioral bristles. The "mortality incident" involving the red tide event in southwest Florida during the summer of 1996 should serve as a reminder that the Florida manatee population and the status of all sirenians is precarious. Although some estimates suggest that the Florida manatee population may be stable, annual mortality numbers as well as habitat degradation continue to increase. Sirenian conservation and research efforts must continue. ii ACKNOWLEDGMENTS Research involving Florida manatees required that I work with several different government agencies and private parks. The staff of the Sirenia Project, U.S. Geological Service, Biological Resources Division - Florida Caribbean Science Center has been most helpful in conducting the behavioral aspect of this research and allowed this work to occur under their permit (U.S. Fish and Wildlife Permit number PRT-791721). Numerous conversations regarding manatee biology with Dr. -
Tail Autotomy Plays No Important Role in Influencing Locomotor Performance and Antipredator Behavior in a Cursorial Gecko
ethology international journal of behavioural biology Ethology Tail Autotomy Plays No Important Role in Influencing Locomotor Performance and Anti-Predator Behavior in a Cursorial Gecko Hong-Liang Lu* , Guo-Hua Ding , Ping Ding* & Xiang Ji * Key Laboratory of Conservation Biology for Endangered Wildlife of the Ministry of Education, College of Life Sciences, Zhejiang University, Hangz- hou 310058, Zhejiang, China Jiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, Nanjing 210046, Jiangsu, China Correspondence Abstract Xiang Ji, Jiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life We used the frog-eyed sand gecko (Teratoscincus scincus) as a model sys- Sciences, Nanjing Normal University, Nanjing tem to evaluate the locomotor costs of tail loss, and to examine whether 210046, Jiangsu, China. tailless geckos use alternative anti-predator behavior to compensate for E-mail: [email protected], xiangji150@ the costs of tail loss. Of the 16 field-captured geckos, eight were used as hotmail.com experimental animals and the remaining ones as controls. Locomotor performance, activity level and anti-predator behavior were measured Received: January 21, 2010 Initial acceptance: February 22, 2010 for experimental geckos before and after the tail-removing treatment. Final acceptance: March 15, 2010 Control geckos never undergoing the tail-removing manipulation were (J. Kotiaho) measured to serve as controls for the measurements taken at the same time for experimental geckos. Experimental geckos did not differ from doi: 10.1111/j.1439-0310.2010.01780.x controls in activity level before they underwent the tail-removing manipulation, but became less active thereafter. -
Assessing Symbiont Extinction Risk Using Cophylogenetic Data 2 3 Jorge Doña1 and Kevin P
1 Assessing symbiont extinction risk using cophylogenetic data 2 3 Jorge Doña1 and Kevin P. Johnson1 4 5 1. Illinois Natural History Survey, Prairie Research Institute, University of Illinois at Urbana-Champaign, 6 1816 S. Oak St., Champaign, IL 61820, USA 7 8 *Corresponding authors: Jorge Doña & Kevin Johnson; e-mail: [email protected] & [email protected] 9 10 Abstract: Symbionts have a unique mode of life that has attracted the attention of ecologists and 11 evolutionary biologists for centuries. As a result of this attention, these disciplines have produced 12 a mature body of literature on host-symbiont interactions. In contrast, the discipline of symbiont 13 conservation is still in a foundational stage. Here, we aim to integrate methodologies on symbiont 14 coevolutionary biology with the perspective of conservation. We focus on host-symbiont 15 cophylogenies, because they have been widely used to study symbiont diversification history and 16 contain information on symbiont extinction. However, cophylogenetic information has never been 17 used nor adapted to the perspective of conservation. Here, we propose a new statistic, 18 “cophylogenetic extinction rate” (Ec), based on coevolutionary knowledge, that uses data from 19 event-based cophylogenetic analyses, and which could be informative to assess relative symbiont 20 extinction risks. Finally, we propose potential future research to further develop estimation of 21 symbiont extinction risk from cophylogenetic analyses and continue the integration of this existing 22 knowledge of coevolutionary biology and cophylogenetics into future symbiont conservation 23 studies and practices. 24 25 Keywords: coevolution, coextinction risk, conservation biology, cophylogenies, host-symbiont 26 interactions, parasites. -
Evolutionary Pressure in Lexicase Selection Jared M
When Specialists Transition to Generalists: Evolutionary Pressure in Lexicase Selection Jared M. Moore1 and Adam Stanton2 1School of Computing and Information Systems, Grand Valley State University, Allendale, MI, USA 2School of Computing and Mathematics, Keele University, Keele, ST5 5BG, UK [email protected], [email protected] Abstract Downloaded from http://direct.mit.edu/isal/proceedings-pdf/isal2020/32/719/1908636/isal_a_00254.pdf by guest on 02 October 2021 Generalized behavior is a long standing goal for evolution- ary robotics. Behaviors for a given task should be robust to perturbation and capable of operating across a variety of envi- ronments. We have previously shown that Lexicase selection evolves high-performing individuals in a semi-generalized wall crossing task–i.e., where the task is broadly the same, but there is variation between individual instances. Further Figure 1: The wall crossing task examined in this study orig- work has identified effective parameter values for Lexicase inally introduced in Stanton and Channon (2013). The ani- selection in this domain but other factors affecting and ex- plaining performance remain to be identified. In this paper, mat must cross a wall of varying height to reach the target we expand our prior investigations, examining populations cube. over evolutionary time exploring other factors that might lead wall-crossing task (Moore and Stanton, 2018). Two key to generalized behavior. Results show that genomic clusters factors contributing to the success of Lexicase were iden- do not correspond to performance, indicating that clusters of specialists do not form within the population. While early tified. First, effective Lexicase parameter configurations ex- individuals gain a foothold in the selection process by spe- perience an increasing frequency of tiebreaks. -
Characterization of Arm Autotomy in the Octopus, Abdopus Aculeatus (D’Orbigny, 1834)
Characterization of Arm Autotomy in the Octopus, Abdopus aculeatus (d’Orbigny, 1834) By Jean Sagman Alupay A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Integrative Biology in the Graduate Division of the University of California, Berkeley Committee in charge: Professor Roy L. Caldwell, Chair Professor David Lindberg Professor Damian Elias Fall 2013 ABSTRACT Characterization of Arm Autotomy in the Octopus, Abdopus aculeatus (d’Orbigny, 1834) By Jean Sagman Alupay Doctor of Philosophy in Integrative Biology University of California, Berkeley Professor Roy L. Caldwell, Chair Autotomy is the shedding of a body part as a means of secondary defense against a predator that has already made contact with the organism. This defense mechanism has been widely studied in a few model taxa, specifically lizards, a few groups of arthropods, and some echinoderms. All of these model organisms have a hard endo- or exo-skeleton surrounding the autotomized body part. There are several animals that are capable of autotomizing a limb but do not exhibit the same biological trends that these model organisms have in common. As a result, the mechanisms that underlie autotomy in the hard-bodied animals may not apply for soft bodied organisms. A behavioral ecology approach was used to study arm autotomy in the octopus, Abdopus aculeatus. Investigations concentrated on understanding the mechanistic underpinnings and adaptive value of autotomy in this soft-bodied animal. A. aculeatus was observed in the field on Mactan Island, Philippines in the dry and wet seasons, and compared with populations previously studied in Indonesia.