A Mitosporic Fungus Capturing Pollen Grains
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A Taxonomic and Phylogenetic Investigation of Conifer Endophytes
A Taxonomic and Phylogenetic Investigation of Conifer Endophytes of Eastern Canada by Joey B. Tanney A thesis submitted to the Faculty of Graduate and Postdoctoral Affairs in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biology Carleton University Ottawa, Ontario © 2016 Abstract Research interest in endophytic fungi has increased substantially, yet is the current research paradigm capable of addressing fundamental taxonomic questions? More than half of the ca. 30,000 endophyte sequences accessioned into GenBank are unidentified to the family rank and this disparity grows every year. The problems with identifying endophytes are a lack of taxonomically informative morphological characters in vitro and a paucity of relevant DNA reference sequences. A study involving ca. 2,600 Picea endophyte cultures from the Acadian Forest Region in Eastern Canada sought to address these taxonomic issues with a combined approach involving molecular methods, classical taxonomy, and field work. It was hypothesized that foliar endophytes have complex life histories involving saprotrophic reproductive stages associated with the host foliage, alternative host substrates, or alternate hosts. Based on inferences from phylogenetic data, new field collections or herbarium specimens were sought to connect unidentifiable endophytes with identifiable material. Approximately 40 endophytes were connected with identifiable material, which resulted in the description of four novel genera and 21 novel species and substantial progress in endophyte taxonomy. Endophytes were connected with saprotrophs and exhibited reproductive stages on non-foliar tissues or different hosts. These results provide support for the foraging ascomycete hypothesis, postulating that for some fungi endophytism is a secondary life history strategy that facilitates persistence and dispersal in the absence of a primary host. -
2 Pezizomycotina: Pezizomycetes, Orbiliomycetes
2 Pezizomycotina: Pezizomycetes, Orbiliomycetes 1 DONALD H. PFISTER CONTENTS 5. Discinaceae . 47 6. Glaziellaceae. 47 I. Introduction ................................ 35 7. Helvellaceae . 47 II. Orbiliomycetes: An Overview.............. 37 8. Karstenellaceae. 47 III. Occurrence and Distribution .............. 37 9. Morchellaceae . 47 A. Species Trapping Nematodes 10. Pezizaceae . 48 and Other Invertebrates................. 38 11. Pyronemataceae. 48 B. Saprobic Species . ................. 38 12. Rhizinaceae . 49 IV. Morphological Features .................... 38 13. Sarcoscyphaceae . 49 A. Ascomata . ........................... 38 14. Sarcosomataceae. 49 B. Asci. ..................................... 39 15. Tuberaceae . 49 C. Ascospores . ........................... 39 XIII. Growth in Culture .......................... 50 D. Paraphyses. ........................... 39 XIV. Conclusion .................................. 50 E. Septal Structures . ................. 40 References. ............................. 50 F. Nuclear Division . ................. 40 G. Anamorphic States . ................. 40 V. Reproduction ............................... 41 VI. History of Classification and Current I. Introduction Hypotheses.................................. 41 VII. Growth in Culture .......................... 41 VIII. Pezizomycetes: An Overview............... 41 Members of two classes, Orbiliomycetes and IX. Occurrence and Distribution .............. 41 Pezizomycetes, of Pezizomycotina are consis- A. Parasitic Species . ................. 42 tently shown -
MYCOTAXON Volume 91, Pp
MYCOTAXON Volume 91, pp. 185–192 January–March 2005 A new species of Dactylella and its teleomorph MINGHE MO, WEI ZHOU, YING HUANG, ZEFEN YU & KEQIN ZHANG* [email protected] Laboratory for Conservation and Utilization of Bioresources Yunnan University, Kunming 650091, P.R. China Abstract— Dactylella lignatilis, a new species, is described as the anamorph of an unidentified species of the genus Hyalorbilia. The fungus produces spindle-shaped to cylindrical conidia with 1-6 septa (usually 3-4). The conidia are 25-51 µm long (×=41), 2.5-6.3 µm wide (×=4.8), and are solitarily borne on extensively ramified conidiophores. The fungus fails to trap nematodes on water agar medium when challenged with nematodes. Keywords—anamorph-teleomorph connection Introduction The fungi of Orbiliaceae Nannf. show cup-shaped ascomata and usually occur in nature on substrates that are either continually moist or periodically dry out. Traditionally, the Orbiliaceae was placed within the Helotiales Nannf. and originally included three genera, Orbilia Fr., Hyalinia Boud. and Patinella Sacc. (Nannfeldt 1932). However, in the opinion of Spooner (1987), Patinella was to be misplaced in Orbiliaceae and the genus Habrostictis Fuckel should be included in the family. Furthermore, a critical analysis of the combination of morphological characters showed that Habrostictis and Hyalinia were synonymized with Orbilia (Baral 1994). Molecular evidence proved that the Orbiliaceae are not closely related to the Helotiales and now only two genera, Orbilia and Hyalorbilia Baral & G. Marson, were accepted for which a new class Orbiliomycetes was created (Eriksson et al. 2003). Many fungi have life cycles that include both sexual states (teleomorphs) and asexual states (anamorphs), and these may legitimately be given separate names (Hennebert & Weresub 1977, Weresub & Hennebert 1979). -
Orbilia Laevimarginata Sp. Nov. and Its Asexual Morph
Phytotaxa 203 (3): 245–253 ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ PHYTOTAXA Copyright © 2015 Magnolia Press Article ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.203.3.3 Orbilia laevimarginata sp. nov. and its asexual morph YING ZHANG1, XIAOXIA HE1, HANS-OTTO BARAL2, MIN QIAO1, MICHAEL WEIβ3, BIN LIU4, KE-QIN ZHANG1 & ZEFEN YU1* 1Laboratory for Conservation and Utilization of Bio-resources and Key Laboratory for Microbial Resources of the Ministry of Education, Yunnan University, Kunming 650091, P.R. China 2Blaihofstraße 42, D-72074 Tübingen (Germany) 3Department of Biology, University of Tübingen (Germany) 4 Institute of Applied Microbiology, Guangxi University, Nanning 530005, P.R. China Abstract O. laevimarginata is here described as a new species, and also its asexual morph could not be assigned to an existing taxon. Anamorphic strains were obtained from three teleomorph specimens which were collected at different sites and dates. The anamorph is characterized by cylindric-ellipsoid to oblong conidia, mainly 1-septate, growing either singly or mostly from 2–10 denticles in a capitate arrangement on the tip of conidiophores. These morphological characters are similar to those of the nematophagous anamorph genus Arthrobotrys, but the present isolates lack the ability to produce any trapping devices when contacting with nematodes. Phylogenetic analysis inferred from ITS rDNA sequences on different groups within Or- bilia showed that the isolates of O. laevimarginata clustered together in a clade separate from Orbilia crenatomarginata (= Hyalinia crystallina). The two species are close to O. scolecospora and an undescribed species, which all have a crenulate to dentate apothecial margin composed of solid glassy processes. -
Redalyc.DIVERSITY of SAPROTROPHIC ANAMORPHIC
Darwiniana ISSN: 0011-6793 [email protected] Instituto de Botánica Darwinion Argentina Allegrucci, Natalia; Cabello, Marta N.; Arambarri, Angélica M. DIVERSITY OF SAPROTROPHIC ANAMORPHIC ASCOMYCETES FROM NATIVE FORESTS IN ARGENTINA: AN UPDATED REVIEW Darwiniana, vol. 47, núm. 1, 2009, pp. 108-124 Instituto de Botánica Darwinion Buenos Aires, Argentina Available in: http://www.redalyc.org/articulo.oa?id=66912085007 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative DARWINIANA 47(1): 108-124. 2009 ISSN 0011-6793 DIVERSITY OF SAPROTROPHIC ANAMORPHIC ASCOMYCETES FROM NATIVE FORESTS IN ARGENTINA: AN UPDATED REVIEW Natalia Allegrucci, Marta N. Cabello & Angélica M. Arambarri Instituto de Botánica Spegazzini, Facultad de Ciencias Naturales y Museo, Universidad Nacional de La Plata, 1900 La Plata, Provincia de Buenos Aires, Argentina; [email protected] (author for correspondence). Abstract. Allegrucci, N.; M. N. Cabello & A. M. Arambarri. 2009. Diversity of Saprotrophic Anamorphic Ascomy- cetes from native forests in Argentina: an updated review. Darwiniana 47(1): 108-124. Eight regions of native forests have been recognized in Argentina: Chaco forest, Misiones rain forest, Tucumán-Bolivia forest (Yunga), Andean-Patagonian forest, “Monte”, “Espinal”, fluvial forests of the Paraguay, Paraná and Uruguay rivers, and “Talares” in the Pampean region. We reviewed the available data concerning biodiversity of saprotrophic micro-fungi (anamorphic Ascomycota) in those native forests from Argentina, from the earliest collections, done by Spegazzini, to present. Among the above mentioned regions most studies on saprotrophic micro-fungi concentrates on the Andean-Pata- gonian forest, the fluvial forests of the Paraguay, Paraná and Uruguay rivers and the “Talares”, in the Pampean region. -
An Online Resource for Marine Fungi
Fungal Diversity https://doi.org/10.1007/s13225-019-00426-5 (0123456789().,-volV)(0123456789().,- volV) An online resource for marine fungi 1,2 3 1,4 5 6 E. B. Gareth Jones • Ka-Lai Pang • Mohamed A. Abdel-Wahab • Bettina Scholz • Kevin D. Hyde • 7,8 9 10 11 12 Teun Boekhout • Rainer Ebel • Mostafa E. Rateb • Linda Henderson • Jariya Sakayaroj • 13 6 6,17 14 Satinee Suetrong • Monika C. Dayarathne • Vinit Kumar • Seshagiri Raghukumar • 15 1 16 6 K. R. Sridhar • Ali H. A. Bahkali • Frank H. Gleason • Chada Norphanphoun Received: 3 January 2019 / Accepted: 20 April 2019 Ó School of Science 2019 Abstract Index Fungorum, Species Fungorum and MycoBank are the key fungal nomenclature and taxonomic databases that can be sourced to find taxonomic details concerning fungi, while DNA sequence data can be sourced from the NCBI, EBI and UNITE databases. Nomenclature and ecological data on freshwater fungi can be accessed on http://fungi.life.illinois.edu/, while http://www.marinespecies.org/provides a comprehensive list of names of marine organisms, including information on their synonymy. Previous websites however have little information on marine fungi and their ecology, beside articles that deal with marine fungi, especially those published in the nineteenth and early twentieth centuries may not be accessible to those working in third world countries. To address this problem, a new website www.marinefungi.org was set up and is introduced in this paper. This website provides a search facility to genera of marine fungi, full species descriptions, key to species and illustrations, an up to date classification of all recorded marine fungi which includes all fungal groups (Ascomycota, Basidiomycota, Blastocladiomycota, Chytridiomycota, Mucoromycota and fungus-like organisms e.g. -
Towards Incorporating Asexually Reproducing Fungi in the Natural Classification and Notes for Pleomorphic Genera
Mycosphere 12(1): 238–405 (2021) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/12/1/4 Towards incorporating asexually reproducing fungi in the natural classification and notes for pleomorphic genera Wijayawardene NN1,2,3, Hyde KD4, Anand G5, Dissanayake LS6, Tang LZ1,* and Dai DQ1,* 1Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan 655011, P.R. China 2State Key Laboratory of Functions and Applications of Medicinal Plants, Guizhou Medical University, Guiyang 550014, P.R. China 3Section of Genetics, Institute for Research and Development in Health and Social Care No: 393/3, Lily Avenue, Off Robert Gunawardane Mawatha, Battaramulla 10120, Sri Lanka4Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 5Department of Botany, University of Delhi, Delhi-110007, India 6The Engineering Research Center of Southwest Bio–Pharmaceutical Resource Ministry of Education, Guizhou University, Guiyang 550025, Guizhou Province, P.R. China Wijayawardene NN, Hyde KD, Anand G, Dissanayake LS, Tang LZ, Dai DQ 2021 – Towards incorporating asexually reproducing fungi in the natural classification and notes for pleomorphic genera. Mycosphere 12(1), 238–405, Doi 10.5943/mycosphere/12/1/4 Abstract This is a continuation of a series of studies incorporating asexually reproducing fungi in a natural classification. Over 3653 genera (ca. 30,000 morphological species) are known from asexual reproduction (1388 coelomycetes and 2265 hyphomycetes) in their life cycle. Among these, 687 genera are pleomorphic (305 coelomycetous; 378 hyphomycetous and four genera show both coelomycetous and hyphomycetous morphs). We provide notes for these pleomorphic genera in this paper. -
Arthrobotrys Yunnanensis Sp. Nov., the Fourth Anamorph of Orbilia Auricolor
Fungal Diversity Arthrobotrys yunnanensis sp. nov., the fourth anamorph of Orbilia auricolor MingHe Mo, XiaoWei Huang, Wei Zhou, Ying Huang, Yu E Hao and KeQin Zhang* Laboratory for Conservation and Utilization of Bio-resources, Yunnan University, Kunming, 650091, Yunnan Province, PR China Mo, M.H., Huang, X.W., Zhou, W., Huang, Y., Hao, Y.E. and Zhang, K.Q. (2005). Arthrobotrys yunnanensis sp. nov., the fourth anamorph of Orbilia auricolor. Fungal Diversity 18: 107-115. A new species of predacious fungi, Arthrobotrys yunnanensis, is described and illustrated as the fourth anamorph of Orbilia auricolor. The fungus produces simple, erect conidiophores with several short apical denticles. The conidia are nonseptate or occasionally uniseptate, elongate ellipsoid-cylindrical or slightly clavate. In aged cultures it forms spherical to ellipsoidal chlamydospores. In the presence of nematodes, the fungus forms three-dimensional adhesive networks. In this paper the known anamorphs connected to the genus Orbilia also are summarized. Key words: anamorph-teleomorph connection, Arthrobotrys, Orbilia, predacious fungi. Introduction Nematophagous fungi have been the subject of research over several decades in fundamental studies of their ecology, distribution and systematics, and as potential biological control agents of nematode pathogens of plants and animals (Li et al., 2002; Liu and Zhang, 2003; Dong et al., 2004). The predacious hyphomycetes in Arthrobotrys Corda and related genera, some with teleomorphs in Orbilia Fr. (Ascomycota, Orbiliaceae), destroy nematodes using several kinds of trapping devices: stalker and sessile adhesive knobs, two- or three-dimensional adhesive nets, and constricting and non-constricting hyphal rings (Scholler et al., 1999). The known anamorphs of Orbilia include both predacious and non-predacious fungi (Table 1). -
Do Foliar Fungal Communities of Norway Spruce Shift Along a Tree Species Diversity Gradient in Mature European Forests?
Fungal Ecology 23 (2016) 97e108 Contents lists available at ScienceDirect Fungal Ecology journal homepage: www.elsevier.com/locate/funeco Do foliar fungal communities of Norway spruce shift along a tree species diversity gradient in mature European forests? * Diem Nguyen , Johanna Boberg, Katarina Ihrmark, Elna Stenstrom,€ Jan Stenlid Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, Box 7026, 75007 Uppsala, Sweden article info abstract Article history: Foliar fungal species are diverse and colonize all plants, though whether forest tree species composition Received 18 November 2015 influences the distribution of these fungal communities remains unclear. Fungal communities include Received in revised form quiescent taxa and the functionally important and metabolically active taxa that respond to changes in 1 July 2016 the environment. To determine fungal community shifts along a tree species diversity gradient, needles Accepted 6 July 2016 of Norway spruce were sampled from trees from four mature European forests. We hypothesized that the fungal communities and specific fungal taxa would correlate with tree species diversity. Furthermore, the Corresponding Editor: Marie Louise Davey active fungal community, and not the total community, would shift along the tree diversity gradient. High-throughput sequencing showed significant differences in the fungal communities in the different Keywords: forests, and in one forest, tree diversity effects were observed, though this was not a general phenom- Diversity gradient enon. Our study also suggests that studying the metabolically active community may not provide FunDivEUROPE additional information about community composition or diversity. Forests © 2016 The Author(s). Published by Elsevier Ltd. This is an open access article under the CC BY license Fungal community (http://creativecommons.org/licenses/by/4.0/). -
Towards Incorporating Anamorphic Fungi in a Natural Classification – Checklist and Notes for 2010
Mycosphere Towards incorporating anamorphic fungi in a natural classification – checklist and notes for 2010 Hyde KD1,2*, McKenzie EHC3 and KoKo TW1 1School of Mae Fah Luang University, 333 M. 1. T. Tasud Muang District, Chiang Rai 57100, Thailand. 2Botany and Microbiology Department, College of Science, King Saud University, Riyadh, Saudi Arabia. 3Manaaki Whenua Landcare Research, Private Bag 92170, Auckland, New Zealand. Hyde KD, McKenzie EHC, KoKo TW. (2011). Towards incorporating anamorphic fungi in a natural classification – checklist and notes for 2010. Mycosphere 2(1), 1–88. A complilation of anamorphic names for both Ascomycota and Basidiomycota is provided which compises 2873 genera. The genera are listed against a backbone of teleomorphic relationships where known. The study reveals that 699 genera and 94 anamorph-like genera are linked to teleomorphic genera names, 447 genera (one anamorph-like genus) are linked to teleomorph families, orders or classes, while for more than 1728 (60.15%) genera no teleomorph link is known. Key words –Asexual fungi – life cycle – sexual fungi – taxonomy Article Information Received 4 February 2011 Accepted 7 February 2011 Published online 10 March 2011 *Corresponding author: Hyde KD – e-mail – [email protected] Introduction et al. 2010), these genera will be classified in The purpose of the present paper is to families, orders and classes of Ascomycota and collate the knowledge of anamorphic fungi in Basidiomycota. This will result in more and relationship to their teleomorphic states. It more anamorphic states being described and attempts to classify the anamorphic genera in a illustrated without being given formal names natural biological framework for the Ascomy- and therefore it is important to have a forum cota based on the Outline of Ascomycota 2009 where anamorphic data can be brought to the (Lumbsch & Huhndorf 2010) and for the attention of researchers. -
Recommendations Orbiliaceae 9.4.2015
Recommendations about Genera to be Protected or Suppressed in the Orbiliaceae (Orbiliomycetes) Hans-Otto Baral, Evi Weber, Walter Gams, Marc Stadler, Ludmila Marvanová, Michael Weiß, Bin Liu, XingZhong Liu, Guy Marson, Gregor Hagedorn Abstract: A list of all generic names that have been brought into connection with the Orbiliomycetes is provided. A recommendation is made about which generic names should be used in accordance with the new rules and the chosen generic concept. This concerns cases where different generic names compete not only within the same morph but also with a different morph. There is a high mismatch in the current generic concepts between asexual and sexual morph: a narrow concept was used for the asexual morph, but a rather broad concept for the sexual morph. Therefore, much more anamorph generic names have been established. However, quite a few genera of both morphs turned out to be artificial as they were based on single characters without genetical support. Three different generic concepts within the Orbiliomycetes are here presented. A broad concept recognizes a large genus Orbilia, with which most of the listed names fall into synonymy. A moderate concept would subdivide Orbilia into a number of genera, with the nematode-trapping fungi merged in Arthobotrys. A narrow generic concept accepts within the latter group different genera for different trapping organs, but would also subdivide the remaining groups of Orbilia into various further genera. In our monograph we maintained the broad concept because quite a few species included in Orbilia s. l. are difficult to place, and because morphology often does not coincide with molecular data.