Dry After-Ripening, Light, Cold Stratification and Temperature Effects on Seed Germination of Primula Poissonii from Yunnan, China
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* Correspondence To: Yujing Yan, Email: [email protected] Or Charles C
Supplementary Materials for Phytogeographic history of the Tea family inferred through high-resolution phylogeny and fossils *Yujing Yan1,2, *Charles C. Davis2, Dimitar Dimitrov1,3, Zhiheng Wang4, Carsten Rahbek5,1,4,6,7, Michael Krabbe Borregaard1 1. Center for Macroecology, Evolution and Climate, GLOBE Institute, University of Copenhagen, Universitetsparken 15, 2100, Copenhagen, Denmark 2. Department of Organismic and Evolutionary Biology, Harvard University Herbaria, 22 Divinity Ave, Cambridge, MA 02138, USA 3. Department of Natural History, University Museum of Bergen, University of Bergen, P.O. Box 7800, 5020 Bergen, Norway 4. Institute of Ecology, College of Urban and Environmental Sciences, Key Laboratory of Earth Surface Processes of Ministry of Education, Peking University, Beijing 100871, China 5. Center for Global Mountain Biodiversity, GLOBE Institute, University of Copenhagen, Universitetsparken 15, 2100 Copenhagen, Denmark 6. Department of Life Sciences, Imperial College London, Silkwood Park campus, Ascot SL5 7PY, UK 7. Danish Institute for Advanced Study, University of Southern Denmark, Odense, Denmark. * Correspondence to: Yujing Yan, email: [email protected] or Charles C. Davis, email: [email protected] This PDF file includes: Appendix 1 (p.4) Supplementary Notes 1 (p. 2-4) Supplementary Tables S1 to S11 (p.7-42) Supplementary Figures S1 to S10 (p.43-52) 1 Supplementary Note 1. Inference of biogeographical patterns using a fully Bayesian method in RevBayes We applied an alternative biogeographic method proposed by Landis et al. (2020) to a subset of our Theaceae empirical dataset and compared its performance to our method. This method uses a hierarchical Bayesian approach to account for the uncertainty in the position of fossils (lack of characters), phylogenetic relationships, and the geological/biogeographic template at once. -
A Consensus Phylogenomic Approach Highlights Paleopolyploid and Rapid Radiation in the History of Ericales
RESEARCH ARTICLE A consensus phylogenomic approach highlights paleopolyploid and rapid radiation in the history of Ericales Drew A. Larson1,4 , Joseph F. Walker2 , Oscar M. Vargas3 , and Stephen A. Smith1 Manuscript received 8 December 2019; revision accepted 12 February PREMISE: Large genomic data sets offer the promise of resolving historically recalcitrant 2020. species relationships. However, different methodologies can yield conflicting results, 1 Department of Ecology & Evolutionary Biology, University of especially when clades have experienced ancient, rapid diversification. Here, we analyzed Michigan, Ann Arbor, MI 48109, USA the ancient radiation of Ericales and explored sources of uncertainty related to species tree 2 Sainsbury Laboratory (SLCU), University of Cambridge, Cambridge, inference, conflicting gene tree signal, and the inferred placement of gene and genome CB2 1LR, UK duplications. 3 Department of Ecology & Evolutionary Biology, University of California, Santa Cruz, CA 95060, USA METHODS: We used a hierarchical clustering approach, with tree-based homology and 4Author for correspondence (e-mail: [email protected]) orthology detection, to generate six filtered phylogenomic matrices consisting of data Citation: Larson, D. A., J. F. Walker, O. M. Vargas, and S. A. Smith. from 97 transcriptomes and genomes. Support for species relationships was inferred 2020. A consensus phylogenomic approach highlights paleopolyploid from multiple lines of evidence including shared gene duplications, gene tree conflict, and rapid radiation -
Attack Insects on Roses C Flowers NOW!
American Primrose Society Quarterly Winter Issue 1983 Volume 41, Number 1 Published January 24, 1983 President's message Copyright 1948 Entered 2nd Class, Edmonds, Washington Editor's Committee: 1570 9th Avc. North The holidays, joyous reunions and celebrations are over. I hope they were Edmonds, WA 98020 joyous for all concerned. We now look forward to a new year with renewed Larry and Linda Bailey hope and expectations that it will be better than the last. During these Irene Buckles winter months, as gardeners, we make out our seed orders, sort out and Dan and Evelyn Douglas Jerry Flintoff clean any seed of our own we have saved, do our dreaming and planning Cy Happy On the cover for all the things we are going to do with our plants this coming season. Allan and Rosctta Jones If you are the practical person and keep your plans within the limits of Dee Peck Primula nutans - the enchanted your ability to accomplish, you are the exception among gardeners. Most Orpha Salsman Primula from China. Photograph Brian and June Skidmore gardeners plan during the winter months more than they can complete taken by Larry Bailey in his garden. during the rush of activity during the spring; so, some projects have to be See page 10. postponed to another year. That is why we live so long trying to complete ISSN 0162-6671 our projects. As A.P.S. members I would recommend two things to put in your plans. First, grow more species Primula. Second, make some hand pollinated crosses with a purpose. -
Plant World Seeds 2016
NEW! PLANT WORLD NEW! PENSTEMON CONFERTUS SEEDS ECHIUM 'RED ROCKET' 2016 NEW! NEW! COSMOS ATROSANGUINEUS AUBRIETA 'SNOWDRIFT' NEW! NEW! JOVELLANA VIOLACEA TANACETUM PARTHENIUM 'MALMESBURY' NEW! NEW! DIERAMA 'PINK FAIRIES' VISCARIA OCULATA 'BLUE ANGEL' www.plant-world-seeds.com Possibly the world’s only catalogue selling this year’s fresh seeds! The last mild winter was kind to Plant World, with plant sales here breaking all previous records, so not everyone is concreting over their plots! This was further helped by the fact that much of our old dilapidated nursery area had been demolished, making way for new easy-to-use waist-height sales tables, and comprehensive coloured information boards for every one of the countless unusual plants sold here. With one of the largest number of seeds offered in the world, our website continues to expand, presently offering more than three thousand different items, many of them exclusive to ourselves, so if you have never yet visited it please give it a try. Exciting plant trips to The Himalayas, Patagonia and Crete wound up the year. As I approach 70 and Tessa 60, we Some of our new discoveries.... finally decided to give up running b Cosmos atrosanguineus - Rich, almost-black, marathons for worthy causes. In April chocolate-scented flowers vary in colour, size this year my dear younger brother and habit. Probably the first ever seed offering. Derek died suddenly after two painful Sorry, only one packet per customer. years of treatment for Non Hodgkins b Viscaria 'Blue Angel' - The "Blue Campion" a Lymphoma. So we decided to enter the rare and fantastic dwarf cottage garden plant, 2015 Great North Run half marathon to with masses of wide-open, large, two-tone mid raise funds for the Lymphoma blue flowers smothering it. -
Phylogeny, Biogeography, Floral Morphology Of
PHYLOGENY, BIOGEOGRAPHY, FLORAL MORPHOLOGY OF CYPHOCARPOIDEAE (CAMPANULACEAE) By Kimberly M. Hansen A Thesis Submitted in Partial Fulfillment of the Requirements for the Degree of Master of Science in Biology Northern Arizona University May 2016 Approved: Tina J. Ayers, Ph.D., Chair Gerard J. Allan, Ph.D. Randall W. Scott, Ph.D. ABSTRACT PHYLOGENY, BIOGEOGRAPHY, FLORAL MORPHOLOGY OF CYPHOCARPOIDEAE (CAMPANULACEAE) KIMBERLY M. HANSEN Campanulaceae is a family of flowering plants in the Asterales that is composed of five morphologically distinct subfamilies. Historically, systematic studies have focused within the two large subfamilies and have largely ignored the relationships among the subfamilies. Furthermore, studies of the anomalous Cyphocarpoideae, consisting of three species distributed in the Atacama Desert of Chile, are all but absent from the literature. Historical hypotheses concerning the evolution of the subfamilies and the placement of Cyphocarpoideae are tested with molecular phylogenies constructed from 57 plastid coding sequences for 78 taxa and 3 nuclear ribosomal genes for 47 taxa. All five subfamilies are sampled including a phylogenetically diverse representation of the larger subfamilies and all three extant species of Cyphocarpoideae. A rapid radiation early in the evolution of Campanulaceae is evident including an initial divergence into two lineages. In the lineage comprised of Lobelioideae, Nemacladoideae and Cyphocarpoideae, Cyphocarpoideae is sister to Nemacladoideae. Divergence dates, geologic events and floristic affinities are used to reconstruct a biogeographic history that includes a single long distance dispersal event from South Africa (origin of Lobelioideae) to the Neotropics via GAARlandia followed by a second dispersal to the Nearctic (origin of Nemacladoideae). The distribution of Cyphocarpoideae can be explained by a dispersal from either the Nearctic or Neotropics. -
Primula Vulgaris (Primrose) Genome Assembly, Annotation and Gene Expression, with Comparative Genomics on the Heterostyly Superg
www.nature.com/scientificreports OPEN Primula vulgaris (primrose) genome assembly, annotation and gene expression, with comparative Received: 15 March 2018 Accepted: 14 November 2018 genomics on the heterostyly Published: xx xx xxxx supergene Jonathan M. Cocker 1,2, Jonathan Wright 2, Jinhong Li1,2, David Swarbreck2, Sarah Dyer3, Mario Caccamo3 & Philip M. Gilmartin1,2 Primula vulgaris (primrose) exhibits heterostyly: plants produce self-incompatible pin- or thrum-form fowers, with anthers and stigma at reciprocal heights. Darwin concluded that this arrangement promotes insect-mediated cross-pollination; later studies revealed control by a cluster of genes, or supergene, known as the S (Style length) locus. The P. vulgaris S locus is absent from pin plants and hemizygous in thrum plants (thrum-specifc); mutation of S locus genes produces self-fertile homostyle fowers with anthers and stigma at equal heights. Here, we present a 411 Mb P. vulgaris genome assembly of a homozygous inbred long homostyle, representing ~87% of the genome. We annotate over 24,000 P. vulgaris genes, and reveal more genes up-regulated in thrum than pin fowers. We show reduced genomic read coverage across the S locus in other Primula species, including P. veris, where we defne the conserved structure and expression of the S locus genes in thrum. Further analysis reveals the S locus has elevated repeat content (64%) compared to the wider genome (37%). Our studies suggest conservation of S locus genetic architecture in Primula, and provide a platform for identifcation and evolutionary analysis of the S locus and downstream targets that regulate heterostyly in diverse heterostylous species. -
Uarttdy Oftoamerican
uarttdy of TO American Primrose VOLUME XXI WINTER 1963 NUMBER 1 Primula pulverulenta at Hannon Acres OFFICERS—AMERICAN PRIMROSE SOCIETY President—Mr. Herbert H. Dickson 13347 56th Ave. South, Seattle 88, Wn. Quarterly Vice President—Mrs. Rosetta M. Jones .6210 So 286th St., Kent, Wn. Rec. Sec'y.—Mrs. Mary E. Zack. 8825 N.W. Bailey, Portland 9, Ore. Corresponding Sec'y—Mrs. Alice Hills Baylor. Johnson, Vermont of the Treasurer—Mrs. Lawrence G. Tait 14015 84th Ave. N.E., Bothell, Wn. REGIONAL VICE-PRESIDENTS Mrs. L. N. Rindspach, Pres. Wn. St. Primrose Soc 19723 88th Ave. N.E., Bothell, Wn. American Primrose Society Mr. Floyd S. Keller, Pres. Tacoma Primrose Soc 8511 S. Ainsworth, Tacoma, Wn, Dr. Raymond F. Piper, Pres. Onandoga Primrose Society, VOLUME XXT WINTER 1963 NUMBER 1 1310 Comstock Avenue, Syracuse 5, N.Y. Mrs. F. J. Macey—Pres. Canadian Primula & Alpine Society, _ 4020 Marine Dr. West, Vancouver, B.C., Canada A Tribute To Dan Bamford 2 Mrs. Raymond Elmstrom—Pres. Oregon Primrose Society, 8715 S.E. 36th St., Milwaukie 22, Ore. Concerning Primulas. Chupirr 2 Candelabra Section Grace. Dowling 4 Mrs. Francis Rae, Pres. East Side Garden Club 9007 132 Ave. N.E., Kirkland, Wn. Mrs. Marion Hannah—Pres. Emeritus, Friday Harbor Primrose Club, Other Members of the Primulaceae Doretta Klaber 14 _ Friday Harbor, Wn. Mrs. Reuben Stohr, Pres. Lewis Co. Primrose Society, 1963 Spring Primrose Shows 17 1512 Grand Ave., Centralia, Wn. Mr. Robert Saxe... 166 Eleventh Ave., San FrancisC9 18, Calif. Mr. Robert Luscher Thedford P. O., Ontario, Canada Nominations for 1963 A. -
The Draft Genome of Primula Veris Yields Insights Into the Molecular Basis of Heterostyly Nowak Et Al
The draft genome of Primula veris yields insights into the molecular basis of heterostyly Nowak et al. Nowak et al. Genome Biology (2015) 16:12 DOI 10.1186/s13059-014-0567-z Nowak et al. Genome Biology (2015) 16:12 DOI 10.1186/s13059-014-0567-z RESEARCH Open Access The draft genome of Primula veris yields insights into the molecular basis of heterostyly Michael D Nowak1,2*, Giancarlo Russo3, Ralph Schlapbach3, Cuong Nguyen Huu4, Michael Lenhard4 and Elena Conti1 Abstract Background: The flowering plant Primula veris is a common spring blooming perennial that is widely cultivated throughout Europe. This species is an established model system in the study of the genetics, evolution, and ecology of heterostylous floral polymorphisms. Despite the long history of research focused on this and related species, the continued development of this system has been restricted due the absence of genomic and transcriptomic resources. Results: We present here a de novo draft genome assembly of P. veris covering 301.8 Mb, or approximately 63% of the estimated 479.22 Mb genome, with an N50 contig size of 9.5 Kb, an N50 scaffold size of 164 Kb, and containing an estimated 19,507 genes. The results of a RADseq bulk segregant analysis allow for the confident identification of four genome scaffolds that are linked to the P. veris S-locus. RNAseq data from both P. veris and the closely related species P. vulgaris allow for the characterization of 113 candidate heterostyly genes that show significant floral morph-specific differential expression. One candidate gene of particular interest is a duplicated GLOBOSA homolog that may be unique to Primula (PveGLO2), and is completely silenced in L-morph flowers. -
Chloroplast Genome Evolution in Actinidiaceae: Clpp Loss, Heterogenous Divergence and Phylogenomic Practice
RESEARCH ARTICLE Chloroplast Genome Evolution in Actinidiaceae: clpP Loss, Heterogenous Divergence and Phylogenomic Practice Wen-Cai Wang2, Si-Yun Chen3, Xian-Zhi Zhang1* 1 College of Forestry, Northwest A&F University, Yangling, Shaanxi, China, 2 School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London, United Kingdom, 3 Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China a11111 * [email protected] Abstract Actinidiaceae is a well-known economically important plant family in asterids. To elucidate OPEN ACCESS the chloroplast (cp) genome evolution within this family, here we present complete genomes Citation: Wang W-C, Chen S-Y, Zhang X-Z (2016) of three species from two sister genera (Clematoclethra and Actinidia) in the Actinidiaceae Chloroplast Genome Evolution in Actinidiaceae: clpP via genome skimming technique. Comparative analyses revealed that the genome structure Loss, Heterogenous Divergence and Phylogenomic and content were rather conservative in three cp genomes in spite of different inheritance Practice. PLoS ONE 11(9): e0162324. doi:10.1371/ pattern, i.e.paternal in Actinidia and maternal in Clematoclethra. The clpP gene was lacked journal.pone.0162324 in all the three sequenced cp genomes examined here indicating that the clpP gene loss is Editor: Zhong-Hua Chen, University of Western likely a conspicuous synapomorphic characteristic during the cp genome evolution of Actini- Sydney, AUSTRALIA diaceae. Comprehensive sequence comparisons in Actinidiaceae cp genomes uncovered Received: June 11, 2016 that there were apparently heterogenous divergence patterns among the cpDNA regions, Accepted: August 19, 2016 suggesting a preferred data-partitioned analysis for cp phylogenomics. -
Sequence Divergence and Phylogenetic Relationships
International Journal of Molecular Sciences Article Comparative Plastid Genomes of Primula Species: Sequence Divergence and Phylogenetic Relationships Ting Ren 1, Yanci Yang 1, Tao Zhou 2 and Zhan-Lin Liu 1,* ID 1 Key Laboratory of Resource Biology and Biotechnology in Western China (Ministry of Education), College of Life Sciences, Northwest University, Xi’an 710069, China; [email protected] (T.R.); [email protected] (Y.Y.) 2 School of Pharmacy, Xi’an Jiaotong University, Xi’an 710061, China; [email protected] * Correspondence: [email protected] Received: 13 March 2018; Accepted: 29 March 2018; Published: 1 April 2018 Abstract: Compared to traditional DNA markers, genome-scale datasets can provide mass information to effectively address historically difficult phylogenies. Primula is the largest genus in the family Primulaceae, with members distributed mainly throughout temperate and arctic areas of the Northern Hemisphere. The phylogenetic relationships among Primula taxa still maintain unresolved, mainly due to intra- and interspecific morphological variation, which was caused by frequent hybridization and introgression. In this study, we sequenced and assembled four complete plastid genomes (Primula handeliana, Primula woodwardii, Primula knuthiana, and Androsace laxa) by Illumina paired-end sequencing. A total of 10 Primula species (including 7 published plastid genomes) were analyzed to investigate the plastid genome sequence divergence and their inferences for the phylogeny of Primula. The 10 Primula plastid genomes were similar in terms of their gene content and order, GC content, and codon usage, but slightly different in the number of the repeat. Moderate sequence divergence was observed among Primula plastid genomes. Phylogenetic analysis strongly supported that Primula was monophyletic and more closely related to Androsace in the Primulaceae family. -
The Gesneriaceae As a Case Study
Unicentre CH-1015 Lausanne http://serval.unil.ch RRYear : 2016 CORRELATES AND GENETIC BASIS OF PLANT DIVERSIFICATION IN THE NEOTROPICS: THE GESNERIACEAE AS A CASE STUDY Serrano Serrano Martha Liliana Serrano Serrano Martha Liliana, 2016, CORRELATES AND GENETIC BASIS OF PLANT DIVERSIFICATION IN THE NEOTROPICS: THE GESNERIACEAE AS A CASE STUDY Originally published at : Thesis, University of Lausanne Posted at the University of Lausanne Open Archive http://serval.unil.ch Document URN : urn:nbn:ch:serval-BIB_D4955919051E9 Droits d’auteur L'Université de Lausanne attire expressément l'attention des utilisateurs sur le fait que tous les documents publiés dans l'Archive SERVAL sont protégés par le droit d'auteur, conformément à la loi fédérale sur le droit d'auteur et les droits voisins (LDA). A ce titre, il est indispensable d'obtenir le consentement préalable de l'auteur et/ou de l’éditeur avant toute utilisation d'une oeuvre ou d'une partie d'une oeuvre ne relevant pas d'une utilisation à des fins personnelles au sens de la LDA (art. 19, al. 1 lettre a). A défaut, tout contrevenant s'expose aux sanctions prévues par cette loi. Nous déclinons toute responsabilité en la matière. Copyright The University of Lausanne expressly draws the attention of users to the fact that all documents published in the SERVAL Archive are protected by copyright in accordance with federal law on copyright and similar rights (LDA). Accordingly it is indispensable to obtain prior consent from the author and/or publisher before any use of a work or part of a work for purposes other than personal use within the meaning of LDA (art. -
Typification of Primula L. Taxa Names (Primulaceae)
adansonia 2019 ● 41 ● 9 DIRECTEUR DE LA PUBLICATION : Bruno David Président du Muséum national d’Histoire naturelle RÉDACTEUR EN CHEF / EDITOR-IN-CHIEF : Thierry Deroin RÉDACTEURS / EDITORS : Porter P. Lowry II ; Zachary S. Rogers ASSISTANTS DE RÉDACTION / ASSISTANT EDITORS : Emmanuel Côtez ([email protected]) ; Anne Mabille MISE EN PAGE / PAGE LAYOUT : Emmanuel Côtez COMITÉ SCIENTIFIQUE / SCIENTIFIC BOARD : P. Baas (Nationaal Herbarium Nederland, Wageningen) F. Blasco (CNRS, Toulouse) M. W. Callmander (Conservatoire et Jardin botaniques de la Ville de Genève) J. A. Doyle (University of California, Davis) P. K. Endress (Institute of Systematic Botany, Zürich) P. Feldmann (Cirad, Montpellier) L. Gautier (Conservatoire et Jardins botaniques de la Ville de Genève) F. Ghahremaninejad (Kharazmi University, Téhéran) K. Iwatsuki (Museum of Nature and Human Activities, Hyogo) K. Kubitzki (Institut für Allgemeine Botanik, Hamburg) J.-Y. Lesouef (Conservatoire botanique de Brest) P. Morat (Muséum national d’Histoire naturelle, Paris) J. Munzinger (Institut de Recherche pour le Développement, Montpellier) S. E. Rakotoarisoa (Millenium Seed Bank, Royal Botanic Gardens Kew, Madagascar Conservation Centre, Antananarivo) É. A. Rakotobe (Centre d’Applications des Recherches pharmaceutiques, Antananarivo) P. H. Raven (Missouri Botanical Garden, St. Louis) G. Tohmé (Conseil national de la Recherche scientifique Liban, Beyrouth) J. G. West (Australian National Herbarium, Canberra) J. R. Wood (Oxford) COUVERTURE / COVER : Lectotype of Primula membranifolia