HPTLC-Bioluminescence-Coupling Using Luminescent Bacterium Vibrio Fischeri
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Diverse Deep-Sea Anglerfishes Share a Genetically Reduced Luminous
RESEARCH ARTICLE Diverse deep-sea anglerfishes share a genetically reduced luminous symbiont that is acquired from the environment Lydia J Baker1*, Lindsay L Freed2, Cole G Easson2,3, Jose V Lopez2, Dante´ Fenolio4, Tracey T Sutton2, Spencer V Nyholm5, Tory A Hendry1* 1Department of Microbiology, Cornell University, New York, United States; 2Halmos College of Natural Sciences and Oceanography, Nova Southeastern University, Fort Lauderdale, United States; 3Department of Biology, Middle Tennessee State University, Murfreesboro, United States; 4Center for Conservation and Research, San Antonio Zoo, San Antonio, United States; 5Department of Molecular and Cell Biology, University of Connecticut, Storrs, United States Abstract Deep-sea anglerfishes are relatively abundant and diverse, but their luminescent bacterial symbionts remain enigmatic. The genomes of two symbiont species have qualities common to vertically transmitted, host-dependent bacteria. However, a number of traits suggest that these symbionts may be environmentally acquired. To determine how anglerfish symbionts are transmitted, we analyzed bacteria-host codivergence across six diverse anglerfish genera. Most of the anglerfish species surveyed shared a common species of symbiont. Only one other symbiont species was found, which had a specific relationship with one anglerfish species, Cryptopsaras couesii. Host and symbiont phylogenies lacked congruence, and there was no statistical support for codivergence broadly. We also recovered symbiont-specific gene sequences from water collected near hosts, suggesting environmental persistence of symbionts. Based on these results we conclude that diverse anglerfishes share symbionts that are acquired from the environment, and *For correspondence: that these bacteria have undergone extreme genome reduction although they are not vertically [email protected] (LJB); transmitted. -
FDA: "Glowing" Seafood?
FDA: "Glowing" Seafood? http://web.archive.org/web/20080225162926/http://vm.cfsan.fda.gov/~ea... U.S. Food and Drug Administration Seafood Products Research Center July 1998 "GLOWING" SEAFOOD? by Patricia N. Sado* Introduction Seafood that produces a bright, blue-green light in the dark could be a meal from outer space or haute cuisine in a science fiction novel. The U. S. Food and Drug Administration (FDA) has received many consumer complaints about various seafood products "glowing" in the dark. Some of these consumers called their local health departments, poison control centers, and their U.S. Senator because they thought they had been poisoned by radiation. These consumers said they had trouble convincing people that their seafood was emitting light. One consumer took his imitation crabmeat to a local television station. Unfortunately his seafood had dried out and did not glow for the television reporters. Several consumers said that it took them many weeks before they found phone numbers for various government agencies to make inquiries. Several consumers thought their "glowing" seafood was due to phosphorescing phytoplankton, or even fluorescence. The consumers' seafood products "glowing" in the dark were not due to radiation or to fluorescence, which requires an ultraviolet light to trigger the reaction. These seafood products exhibited luminescence due to the presence of certain bacteria that are capable of emitting light. Luminescence by bacteria is due to a chemical reaction catalyzed by luciferase, a protein similar to that found in fireflies. The reaction involves oxidation of a reduced flavin mononucleotide and a long chain aliphatic aldehyde by molecular oxygen to produce oxidized flavin plus fatty acid and light (5, 12). -
The Evolution of Bacterial Shape Complexity by a Curvature-Inducing Module
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.20.954503; this version posted February 20, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Title: The evolution of bacterial shape complexity by a curvature-inducing module Authors: Nicholas R. Martin, Edith Blackman, Benjamin P. Bratton, Thomas M. Bartlett†, Zemer Gitai*. Affiliations: Department of Molecular Biology, Princeton University, Princeton, NJ 08544, USA *Correspondence to: [email protected] †Present address: Department of Microbiology, Harvard Medical School, Boston, MA 02115 Abstract: Bacteria can achieve a staggering diversity of cell shapes that promote critical functions like growth, motility, and virulence1-4. Previous studies suggested that bacteria establish complex shapes by co-opting the core machineries essential for elongation and division5,6. In contrast, we discovered a two-protein module, CrvAB, that can curve bacteria autonomously of the major elongation and division machinery by forming a dynamic, asymmetrically-localized structure in the periplasm. CrvAB is essential for curvature in its native species, Vibrio cholerae, and is sufficient to curve multiple heterologous species spanning 2.5 billion years of evolution. Thus, modular shape determinants can promote the evolution of morphological complexity independently of existing cell shape regulation. Main Text: Cells come in a variety of shapes that contribute to fitness in diverse environments 1,2,7,8. In bacteria, cell curvature can influence motility and host colonization 1,3,4. -
Diversity and Evolution of Bacterial Bioluminescence Genes in the Global Ocean Thomas Vannier, Pascal Hingamp, Floriane Turrel, Lisa Tanet, Magali Lescot, Y
Diversity and evolution of bacterial bioluminescence genes in the global ocean Thomas Vannier, Pascal Hingamp, Floriane Turrel, Lisa Tanet, Magali Lescot, Y. Timsit To cite this version: Thomas Vannier, Pascal Hingamp, Floriane Turrel, Lisa Tanet, Magali Lescot, et al.. Diversity and evolution of bacterial bioluminescence genes in the global ocean. NAR Genomics and Bioinformatics, Oxford University Press, 2020, 2 (2), 10.1093/nargab/lqaa018. hal-02514159 HAL Id: hal-02514159 https://hal.archives-ouvertes.fr/hal-02514159 Submitted on 21 Mar 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Published online 14 March 2020 NAR Genomics and Bioinformatics, 2020, Vol. 2, No. 2 1 doi: 10.1093/nargab/lqaa018 Diversity and evolution of bacterial bioluminescence genes in the global ocean Thomas Vannier 1,2,*, Pascal Hingamp1,2, Floriane Turrel1, Lisa Tanet1, Magali Lescot 1,2,* and Youri Timsit 1,2,* 1Aix Marseille Univ, Universite´ de Toulon, CNRS, IRD, MIO UM110, 13288 Marseille, France and 2Research / Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022 Tara GOSEE, 3 rue Michel-Ange, Downloaded from https://academic.oup.com/nargab/article-abstract/2/2/lqaa018/5805306 by guest on 21 March 2020 75016 Paris, France Received October 21, 2019; Revised February 14, 2020; Editorial Decision March 02, 2020; Accepted March 06, 2020 ABSTRACT ganisms and is particularly widespread in marine species (7–9). -
(COVIS) Overview
National Enteric Disease Surveillance: Cholera and Other Vibrio Illness Surveillance (COVIS) Surveillance System Overview: Cholera and Other Vibrio Illness Surveillance (COVIS) Background on infection with species from the family Vibrionaceae Infection with pathogenic species of the family Vibrionaceae can cause two distinct categories of infection: cholera and vibriosis, both of which are nationally notifiable. Cholera is, by definition, caused by infection with toxigenic Vibrio cholerae O1 or O139 and was first reported in the United States in 1832. Infection is characterized by acute, watery diarrhea. An average of 5-10 cases of cholera are reported annually in the United States; most are acquired during international travel, however, on average 1-2 per year are domestically acquired. An increase in the number of cholera cases reported in the United States has occurred when there are cholera outbreaks in the Western Hemisphere, such as Latin America in the 1990s and Haiti in 2010, with almost all attributable to exposures during international travel. CDC annually reports to the World Health Organization all confirmed cholera cases diagnosed in the United States. Vibriosis is caused by infection with any species of the family Vibrionaceae (excluding toxigenic Vibrio cholerae O1 and O139), with an estimated 80,000 cases and 300 deaths annually in the United States (1). The most common clinical manifestations are watery diarrhea, primary septicemia, wound infection, and otitis externa. Risk factors for illness include consumption of shellfish, -
Generation of Fluorescent Bacteria with the Genes Coding for Lumazine Protein and Riboflavin Biosynthesis
sensors Communication Generation of Fluorescent Bacteria with the Genes Coding for Lumazine Protein and Riboflavin Biosynthesis Sunjoo Lim, Eugeney Oh, Miae Choi, Euiho Lee and Chan-Yong Lee * Department of Biochemistry, Chungnam National University, Daejeon 34134, Korea; [email protected] (S.L.); [email protected] (E.O.); [email protected] (M.C.); [email protected] (E.L.) * Correspondence: [email protected]; Tel.: +82-42-821-5482 Abstract: Lumazine protein is a member of the riboflavin synthase superfamily and the intense fluorescence is caused by non-covalently bound to 6,7-dimethyl 8-ribityllumazine. The pRFN4 plasmid, which contains the riboflavin synthesis genes from Bacillus subtilis, was originally designed for overproduction of the fluorescent ligand of 6,7-dimethyl 8-ribityllumazine. To provide the basis for a biosensor based on the lux gene from bioluminescent bacteria of Photobacterium leiognathi, the gene coding for N-terminal domain half of the lumazine protein extending to amino acid 112 (N-LumP) and the gene for whole lumazine protein (W-LumP) from P. leiognathi were introduced by polymerase chain reaction (PCR) and ligated into pRFN4 vector, to construct the recombinant plasmids of N-lumP-pRFN4 and W-lumP-pRFN4 as well as their modified plasmids by insertion of the lux promoter. The expression of the genes in the recombinant plasmids was checked in various Escherichia coli strains, and the fluorescence intensity in Escherichia coli 43R can even be observed in a single cell. These results concerning the co-expression of the genes coding for lumazine protein and for riboflavin synthesis raise the possibility to generate fluorescent bacteria which can be used in the Citation: Lim, S.; Oh, E.; Choi, M.; field of bio-imaging. -
Isolation and Identification of Bioluminescent Bacteria in Squid and Water of Malaysia
Int'l Journal of Advances in Agricultural & Environmental Engg. (IJAAEE) Vol. 1, Issue 2 (2014) ISSN 2349-1523 EISSN 2349-1531 Isolation And Identification Of Bioluminescent Bacteria In Squid And Water Of Malaysia Noor Aini Yaser1, Mohd Faiz Foong Abdullah2, Aslizah Mohd Aris3, Iwana Izni Zainudin3 also in marine ecosystem. Abstract— Bioluminescence is an emission of light that produce These bioluminescent bacteria reported belong to the class by chemical reaction of enzymatic activity and biochemical of the Gammaproteobacteria. Among the bioluminescent bacteria living organism. The most abundant and widely distributed light reported, 17 bioluminescent species were currently known [7]. emitting organism is luminous bacteria either found as free-living in The luminous bacteria were also classified into three genera the ocean or gut symbiont in the host. These sets of species are diversely spread in terrestrial environment, freshwater and also in which are Vibrio, Photobacterium and Xenorhabdus marine ecosystem. These species of bacteria emit blue-green light (Photorhabdus) and the species within the genus Vibrio and provoked by the enzyme luciferase and regulated by the lux gene Photobacterium are usually exist in marine environment and operon and emitted at 490 nm. Some of the uses of the Xenorhabdus belong to terrestrial environment. bioluminescence are as genetic reporters and biosensors. General Some of the natural important of the bioluminescence in microbiological techniques have been used to isolate bioluminescent nature is in attracting prey, camouflage, deterring predators bacteria from water samples and squid. The characterization of 6 isolates bioluminescent bacteria was conducted macroscopic and and in aiding in hunting [8]. microscopically and was further analyses at molecular level using Bioluminescence is the phenomenon that consists of light 16sDNA and sequenced for species identification. -
BIOSCIENCE EXPLAINED, 2001 Bioscience | Explained Vol 1 | No 1
bioscience | explained Vol 1 | No 1 Edith A. Widder Harbor Branch Oceanographic Institution, Fort Pierce, Florida Marine bioluminescence Why do so many animals in the open ocean make light? Who makes light and why? Bioluminescence is visible light made by living creatures. Such creatures are rare on land but extremely common in the oceans. A list of some of the many different kinds of bioluminescent creatures in the world, classified by the different environments in which they live, gives some sense of the relative significance of bioluminescence in the marine environment, compared to in the terrestrial and freshwater realms (Table 1). Bioluminescent creatures occur in all oceans at all depths with the greatest numbers found in the upper 1000 m of the vast open ocean. The prevalence of bioluminescence here is a consequence of the unique visual characteristics of this environment. This is a world without hiding places where sunlight filtering down through the depths decreases approximately 10-fold for every 75 m of descent until all visible light disappears below 1000 m. In this twilight realm the light is dim and blue and highly directional so that the only creatures that are visible are those directly overhead or those that produce their own light with bioluminescence. In this context bioluminescence can aid in the survival of an organism in three critical ways: 1. Bioluminescence can help an animal find food. When looking for something in the dark a flashlight is a very handy tool and many animals have built-in bioluminescent flashlights. The aptly named flashlight fish is a good example (Video clip 1). -
Enhanced Fluorescence Nanoimaging
Ultraluminescent gold core–shell nanoparticles applied to individual bacterial detection based on metal- enhanced fluorescence nanoimaging Daniela Gontero Alicia V. Veglia Denis Boudreau Angel Guillermo Bracamonte Daniela Gontero, Alicia V. Veglia, Denis Boudreau, Angel Guillermo Bracamonte, “Ultraluminescent gold core–shell nanoparticles applied to individual bacterial detection based on metal-enhanced fluorescence nanoimaging,” J. Nanophoton. 12(1), 012505 (2017), doi: 10.1117/1.JNP.12.012505. Ultraluminescent gold core–shell nanoparticles applied to individual bacterial detection based on metal-enhanced fluorescence nanoimaging Daniela Gontero,a Alicia V. Veglia,b Denis Boudreau,c and Angel Guillermo Bracamonteb,* aLaboratorio de Análisis Clínicos y Bacteriológicos, Clínica de la Familia II. Río Tercero, Córdoba, Argentina bUniversidad Nacional de Córdoba, Instituto de Investigaciones en Físico Química de Córdoba (INFIQC), Departamento de Química Orgánica, Facultad de Ciencias Químicas, Ciudad Universitaria, Córdoba, Argentina cUniversité Laval, Centre d’Optique, Photonique et Laser, Département de Chimie, Québec, Canada Abstract. Gold core–shell nanoparticles were synthesized based on metallic cores, variable silica shell spacers covered with modified fluorescent silica layers. Ultraluminescent properties were obtained based on metal-enhanced fluorescence (MEF). Different silica spacers were syn- thesized to optimize the MEF enhancement factor (MEFEF). An optimal MEFEF was determined d− − ¼ equal to 9.5 for shorter silica spacers ( SiO2 10 nm). These nanoparticles were deposed on Escherichia coli bacteria at different concentration levels for Bioimaging generation over their surfaces. The best luminescent nanoparticles were deposed on intermediate and higher bacteria concentrations. In the presence of intermediate bacteria concentrations, the ultraluminescent nanoparticles adsorbed showed an increase of 35% to 45% compared with individual nanopar- ticles. -
Microbial Colonization in Marine Environments: Overview of Current Knowledge and Emerging Research Topics
Journal of Marine Science and Engineering Review Microbial Colonization in Marine Environments: Overview of Current Knowledge and Emerging Research Topics Gabriella Caruso Institute of Polar Sciences, National Reasearch Council (ISP-CNR), Spianata S. Raineri 86, 98122 Messina, Italy; [email protected]; Tel.: +39-090-6015423; Fax: +39-090-669007 Received: 13 December 2019; Accepted: 22 January 2020; Published: 24 January 2020 Abstract: Microbial biofilms are biological structures composed of surface-attached microbial communities embedded in an extracellular polymeric matrix. In aquatic environments, the microbial colonization of submerged surfaces is a complex process involving several factors, related to both environmental conditions and to the physical-chemical nature of the substrates. Several studies have addressed this issue; however, more research is still needed on microbial biofilms in marine ecosystems. After a brief report on environmental drivers of biofilm formation, this study reviews current knowledge of microbial community attached to artificial substrates, as obtained by experiments performed on several material types deployed in temperate and extreme polar marine ecosystems. Depending on the substrate, different microbial communities were found, sometimes highlighting the occurrence of species-specificity. Future research challenges and concluding remarks are also considered. Emphasis is given to future perspectives in biofilm studies and their potential applications, related to biofouling prevention (such as cell-to-cell communication by quorum sensing or improved knowledge of drivers/signals affecting biological settlement) as well as to the potential use of microbial biofilms as sentinels of environmental changes and new candidates for bioremediation purposes. Keywords: biofilms; microbes; colonization; substrates; temperate areas; polar regions 1. Introduction Biofilm formation on substrate surfaces is the first step in biofouling formation [1–5]. -
Diverse Deep-Sea Anglerfishes Share a Genetically Reduced Luminous Symbiont That Is Acquired from the Environment
Nova Southeastern University NSUWorks Biology Faculty Articles Department of Biological Sciences 10-1-2019 Diverse deep-sea anglerfishes share a genetically reduced luminous symbiont that is acquired from the environment Lydia Baker Cornell University Lindsay L. Freed Nova Southeastern University, [email protected] Cole Easson Nova Southeastern University; Middle Tennessee State University, [email protected] Jose Lopez Nova Southeastern University, [email protected] Dante Fenolio San Antonio Zoo, [email protected] See next page for additional authors Follow this and additional works at: https://nsuworks.nova.edu/cnso_bio_facarticles Part of the Biology Commons, and the Marine Biology Commons NSUWorks Citation Baker, Lydia; Lindsay L. Freed; Cole Easson; Jose Lopez; Dante Fenolio; Tracey Sutton; Spencer Nyholm; and Tory Hendry. 2019. "Diverse deep-sea anglerfishes share a genetically reduced luminous symbiont that is acquired from the environment." eLife 2019, (8): e47606. doi:10.7554/eLife.47606.001. This Article is brought to you for free and open access by the Department of Biological Sciences at NSUWorks. It has been accepted for inclusion in Biology Faculty Articles by an authorized administrator of NSUWorks. For more information, please contact [email protected]. Authors Lydia Baker, Lindsay L. Freed, Cole Easson, Jose Lopez, Dante Fenolio, Tracey Sutton, Spencer Nyholm, and Tory Hendry This article is available at NSUWorks: https://nsuworks.nova.edu/cnso_bio_facarticles/986 RESEARCH ARTICLE Diverse deep-sea anglerfishes share -
Luminescent Textiles Using Biobased Products – a Bioinspired Approach
Luminescent textiles using biobased products – A bioinspired approach Doctoral dissertation by SWETA IYER In the partial fulfillment of Erasmus Mundus Joint Doctorate Programme: SMDTex Sustainable Management and Design for Textiles Jointly Organized by University of Lille, France University of Borås, Sweden Soochow University, China Luminescent textiles using biobased products – A bioinspired approach Department of Textile Material Technology University of Borås SE-501 90, Borås, Sweden Copyright © Sweta Iyer, 2020 Cover image by Biswajeet Mohanty Printed in Sweden by Etcetera, Borås ISBN 978-91-88838-85-8 (printed) ISBN 978-91-88838-86-5 (pdf) ISSN 0280-381X, Skrifter från Högskolan i Borås, nr. 109 Electronic version: http://urn.kb.se/resolve?urn=urn:nbn:se:hb:diva-23689 II Luminescent textiles using biobased products – A bioinspired approach Abstract Nature is the most exquisite thing around us with the existence of living organisms exhibiting different intrinsic properties such as water repellence, camouflage behavior, pine cone effect, and touch-sensitive plants. Transfer of knowledge inspired by nature to technological applications has enabled scientists to create sustainable solutions. Nature has designed a few biobased molecules that are responsible for bioluminescence and photoluminescence in some living species. In this thesis, the potential use of luminescence phenomena existing in nature toward the attainment of luminescent textiles was explored. The primary focus of the thesis was to create a biomimetic design method to obtain luminescent textiles using biobased products. Thus, the design method was focused on the selection of optimum bioluminescent reaction systems to emulate on textiles. In the first part of the thesis, a detailed literature study on luminescence phenomenon seen in nature was reviewed.