Control of Aliivibrio Fischeri Luminescence and Decrease In
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Diverse Deep-Sea Anglerfishes Share a Genetically Reduced Luminous
RESEARCH ARTICLE Diverse deep-sea anglerfishes share a genetically reduced luminous symbiont that is acquired from the environment Lydia J Baker1*, Lindsay L Freed2, Cole G Easson2,3, Jose V Lopez2, Dante´ Fenolio4, Tracey T Sutton2, Spencer V Nyholm5, Tory A Hendry1* 1Department of Microbiology, Cornell University, New York, United States; 2Halmos College of Natural Sciences and Oceanography, Nova Southeastern University, Fort Lauderdale, United States; 3Department of Biology, Middle Tennessee State University, Murfreesboro, United States; 4Center for Conservation and Research, San Antonio Zoo, San Antonio, United States; 5Department of Molecular and Cell Biology, University of Connecticut, Storrs, United States Abstract Deep-sea anglerfishes are relatively abundant and diverse, but their luminescent bacterial symbionts remain enigmatic. The genomes of two symbiont species have qualities common to vertically transmitted, host-dependent bacteria. However, a number of traits suggest that these symbionts may be environmentally acquired. To determine how anglerfish symbionts are transmitted, we analyzed bacteria-host codivergence across six diverse anglerfish genera. Most of the anglerfish species surveyed shared a common species of symbiont. Only one other symbiont species was found, which had a specific relationship with one anglerfish species, Cryptopsaras couesii. Host and symbiont phylogenies lacked congruence, and there was no statistical support for codivergence broadly. We also recovered symbiont-specific gene sequences from water collected near hosts, suggesting environmental persistence of symbionts. Based on these results we conclude that diverse anglerfishes share symbionts that are acquired from the environment, and *For correspondence: that these bacteria have undergone extreme genome reduction although they are not vertically [email protected] (LJB); transmitted. -
Delineating Virulence of Vibrio Campbellii
www.nature.com/scientificreports OPEN Delineating virulence of Vibrio campbellii: a predominant luminescent bacterial pathogen in Indian shrimp hatcheries Sujeet Kumar1*, Chandra Bhushan Kumar1,2, Vidya Rajendran1, Nishawlini Abishaw1, P. S. Shyne Anand1, S. Kannapan1, Viswas K. Nagaleekar3, K. K. Vijayan1 & S. V. Alavandi1 Luminescent vibriosis is a major bacterial disease in shrimp hatcheries and causes up to 100% mortality in larval stages of penaeid shrimps. We investigated the virulence factors and genetic identity of 29 luminescent Vibrio isolates from Indian shrimp hatcheries and farms, which were earlier presumed as Vibrio harveyi. Haemolysin gene-based species-specifc multiplex PCR and phylogenetic analysis of rpoD and toxR identifed all the isolates as V. campbellii. The gene-specifc PCR revealed the presence of virulence markers involved in quorum sensing (luxM, luxS, cqsA), motility (faA, lafA), toxin (hly, chiA, serine protease, metalloprotease), and virulence regulators (toxR, luxR) in all the isolates. The deduced amino acid sequence analysis of virulence regulator ToxR suggested four variants, namely A123Q150 (AQ; 18.9%), P123Q150 (PQ; 54.1%), A123P150 (AP; 21.6%), and P123P150 (PP; 5.4% isolates) based on amino acid at 123rd (proline or alanine) and 150th (glutamine or proline) positions. A signifcantly higher level of the quorum-sensing signal, autoinducer-2 (AI-2, p = 2.2e−12), and signifcantly reduced protease activity (p = 1.6e−07) were recorded in AP variant, whereas an inverse trend was noticed in the Q150 variants AQ and PQ. The pathogenicity study in Penaeus (Litopenaeus) vannamei juveniles revealed that all the isolates of AQ were highly pathogenic with Cox proportional hazard ratio 15.1 to 32.4 compared to P150 variants; PP (5.4 to 6.3) or AP (7.3 to 14). -
FDA: "Glowing" Seafood?
FDA: "Glowing" Seafood? http://web.archive.org/web/20080225162926/http://vm.cfsan.fda.gov/~ea... U.S. Food and Drug Administration Seafood Products Research Center July 1998 "GLOWING" SEAFOOD? by Patricia N. Sado* Introduction Seafood that produces a bright, blue-green light in the dark could be a meal from outer space or haute cuisine in a science fiction novel. The U. S. Food and Drug Administration (FDA) has received many consumer complaints about various seafood products "glowing" in the dark. Some of these consumers called their local health departments, poison control centers, and their U.S. Senator because they thought they had been poisoned by radiation. These consumers said they had trouble convincing people that their seafood was emitting light. One consumer took his imitation crabmeat to a local television station. Unfortunately his seafood had dried out and did not glow for the television reporters. Several consumers said that it took them many weeks before they found phone numbers for various government agencies to make inquiries. Several consumers thought their "glowing" seafood was due to phosphorescing phytoplankton, or even fluorescence. The consumers' seafood products "glowing" in the dark were not due to radiation or to fluorescence, which requires an ultraviolet light to trigger the reaction. These seafood products exhibited luminescence due to the presence of certain bacteria that are capable of emitting light. Luminescence by bacteria is due to a chemical reaction catalyzed by luciferase, a protein similar to that found in fireflies. The reaction involves oxidation of a reduced flavin mononucleotide and a long chain aliphatic aldehyde by molecular oxygen to produce oxidized flavin plus fatty acid and light (5, 12). -
Developments in Aquatic Microbiology
INTERNATL MICROBIOL (2000) 3: 203–211 203 © Springer-Verlag Ibérica 2000 REVIEW ARTICLE Samuel P. Meyers Developments in aquatic Department of Oceanography and Coastal Sciences, Louisiana State University, microbiology Baton Rouge, LA, USA Received 30 August 2000 Accepted 29 September 2000 Summary Major discoveries in marine microbiology over the past 4-5 decades have resulted in the recognition of bacteria as a major biomass component of marine food webs. Such discoveries include chemosynthetic activities in deep-ocean ecosystems, survival processes in oligotrophic waters, and the role of microorganisms in food webs coupled with symbiotic relationships and energy flow. Many discoveries can be attributed to innovative methodologies, including radioisotopes, immunofluores- cent-epifluorescent analysis, and flow cytometry. The latter has shown the key role of marine viruses in marine system energetics. Studies of the components of the “microbial loop” have shown the significance of various phagotrophic processes involved in grazing by microinvertebrates. Microbial activities and dissolved organic carbon are closely coupled with the dynamics of fluctuating water masses. New biotechnological approaches and the use of molecular biology techniques still provide new and relevant information on the role of microorganisms in oceanic and estuarine environments. International interdisciplinary studies have explored ecological aspects of marine microorganisms and their significance in biocomplexity. Studies on the Correspondence to: origins of both life and ecosystems now focus on microbiological processes in the Louisiana State University Station. marine environment. This paper describes earlier and recent discoveries in marine Post Office Box 19090-A. Baton Rouge, LA 70893. USA (aquatic) microbiology and the trends for future work, emphasizing improvements Tel.: +1-225-3885180 in methodology as major catalysts for the progress of this broadly-based field. -
The Evolution of Bacterial Shape Complexity by a Curvature-Inducing Module
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.20.954503; this version posted February 20, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Title: The evolution of bacterial shape complexity by a curvature-inducing module Authors: Nicholas R. Martin, Edith Blackman, Benjamin P. Bratton, Thomas M. Bartlett†, Zemer Gitai*. Affiliations: Department of Molecular Biology, Princeton University, Princeton, NJ 08544, USA *Correspondence to: [email protected] †Present address: Department of Microbiology, Harvard Medical School, Boston, MA 02115 Abstract: Bacteria can achieve a staggering diversity of cell shapes that promote critical functions like growth, motility, and virulence1-4. Previous studies suggested that bacteria establish complex shapes by co-opting the core machineries essential for elongation and division5,6. In contrast, we discovered a two-protein module, CrvAB, that can curve bacteria autonomously of the major elongation and division machinery by forming a dynamic, asymmetrically-localized structure in the periplasm. CrvAB is essential for curvature in its native species, Vibrio cholerae, and is sufficient to curve multiple heterologous species spanning 2.5 billion years of evolution. Thus, modular shape determinants can promote the evolution of morphological complexity independently of existing cell shape regulation. Main Text: Cells come in a variety of shapes that contribute to fitness in diverse environments 1,2,7,8. In bacteria, cell curvature can influence motility and host colonization 1,3,4. -
Genetic Diversity of Culturable Vibrio in an Australian Blue Mussel Mytilus Galloprovincialis Hatchery
Vol. 116: 37–46, 2015 DISEASES OF AQUATIC ORGANISMS Published September 17 doi: 10.3354/dao02905 Dis Aquat Org Genetic diversity of culturable Vibrio in an Australian blue mussel Mytilus galloprovincialis hatchery Tzu Nin Kwan*, Christopher J. S. Bolch National Centre for Marine Conservation and Resource Sustainability, University of Tasmania, Locked Bag 1370, Newnham, Tasmania 7250, Australia ABSTRACT: Bacillary necrosis associated with Vibrio species is the common cause of larval and spat mortality during commercial production of Australian blue mussel Mytilus galloprovincialis. A total of 87 randomly selected Vibrio isolates from various stages of rearing in a commercial mus- sel hatchery were characterised using partial sequences of the ATP synthase alpha subunit gene (atpA). The sequenced isolates represented 40 unique atpA genotypes, overwhelmingly domi- nated (98%) by V. splendidus group genotypes, with 1 V. harveyi group genotype also detected. The V. splendidus group sequences formed 5 moderately supported clusters allied with V. splen- didus/V. lentus, V. atlanticus, V. tasmaniensis, V. cyclitrophicus and V. toranzoniae. All water sources showed considerable atpA gene diversity among Vibrio isolates, with 30 to 60% of unique isolates recovered from each source. Over half (53%) of Vibrio atpA genotypes were detected only once, and only 7 genotypes were recovered from multiple sources. Comparisons of phylogenetic diversity using UniFrac analysis showed that the culturable Vibrio community from intake, header, broodstock and larval tanks were phylogenetically similar, while spat tank communities were different. Culturable Vibrio associated with spat tank seawater differed in being dominated by V. toranzoniae-affiliated genotypes. The high diversity of V. splendidus group genotypes detected in this study reinforces the dynamic nature of microbial communities associated with hatchery culture and complicates our efforts to elucidate the role of V. -
Diversity and Evolution of Bacterial Bioluminescence Genes in the Global Ocean Thomas Vannier, Pascal Hingamp, Floriane Turrel, Lisa Tanet, Magali Lescot, Y
Diversity and evolution of bacterial bioluminescence genes in the global ocean Thomas Vannier, Pascal Hingamp, Floriane Turrel, Lisa Tanet, Magali Lescot, Y. Timsit To cite this version: Thomas Vannier, Pascal Hingamp, Floriane Turrel, Lisa Tanet, Magali Lescot, et al.. Diversity and evolution of bacterial bioluminescence genes in the global ocean. NAR Genomics and Bioinformatics, Oxford University Press, 2020, 2 (2), 10.1093/nargab/lqaa018. hal-02514159 HAL Id: hal-02514159 https://hal.archives-ouvertes.fr/hal-02514159 Submitted on 21 Mar 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Published online 14 March 2020 NAR Genomics and Bioinformatics, 2020, Vol. 2, No. 2 1 doi: 10.1093/nargab/lqaa018 Diversity and evolution of bacterial bioluminescence genes in the global ocean Thomas Vannier 1,2,*, Pascal Hingamp1,2, Floriane Turrel1, Lisa Tanet1, Magali Lescot 1,2,* and Youri Timsit 1,2,* 1Aix Marseille Univ, Universite´ de Toulon, CNRS, IRD, MIO UM110, 13288 Marseille, France and 2Research / Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022 Tara GOSEE, 3 rue Michel-Ange, Downloaded from https://academic.oup.com/nargab/article-abstract/2/2/lqaa018/5805306 by guest on 21 March 2020 75016 Paris, France Received October 21, 2019; Revised February 14, 2020; Editorial Decision March 02, 2020; Accepted March 06, 2020 ABSTRACT ganisms and is particularly widespread in marine species (7–9). -
(COVIS) Overview
National Enteric Disease Surveillance: Cholera and Other Vibrio Illness Surveillance (COVIS) Surveillance System Overview: Cholera and Other Vibrio Illness Surveillance (COVIS) Background on infection with species from the family Vibrionaceae Infection with pathogenic species of the family Vibrionaceae can cause two distinct categories of infection: cholera and vibriosis, both of which are nationally notifiable. Cholera is, by definition, caused by infection with toxigenic Vibrio cholerae O1 or O139 and was first reported in the United States in 1832. Infection is characterized by acute, watery diarrhea. An average of 5-10 cases of cholera are reported annually in the United States; most are acquired during international travel, however, on average 1-2 per year are domestically acquired. An increase in the number of cholera cases reported in the United States has occurred when there are cholera outbreaks in the Western Hemisphere, such as Latin America in the 1990s and Haiti in 2010, with almost all attributable to exposures during international travel. CDC annually reports to the World Health Organization all confirmed cholera cases diagnosed in the United States. Vibriosis is caused by infection with any species of the family Vibrionaceae (excluding toxigenic Vibrio cholerae O1 and O139), with an estimated 80,000 cases and 300 deaths annually in the United States (1). The most common clinical manifestations are watery diarrhea, primary septicemia, wound infection, and otitis externa. Risk factors for illness include consumption of shellfish, -
Generation of Fluorescent Bacteria with the Genes Coding for Lumazine Protein and Riboflavin Biosynthesis
sensors Communication Generation of Fluorescent Bacteria with the Genes Coding for Lumazine Protein and Riboflavin Biosynthesis Sunjoo Lim, Eugeney Oh, Miae Choi, Euiho Lee and Chan-Yong Lee * Department of Biochemistry, Chungnam National University, Daejeon 34134, Korea; [email protected] (S.L.); [email protected] (E.O.); [email protected] (M.C.); [email protected] (E.L.) * Correspondence: [email protected]; Tel.: +82-42-821-5482 Abstract: Lumazine protein is a member of the riboflavin synthase superfamily and the intense fluorescence is caused by non-covalently bound to 6,7-dimethyl 8-ribityllumazine. The pRFN4 plasmid, which contains the riboflavin synthesis genes from Bacillus subtilis, was originally designed for overproduction of the fluorescent ligand of 6,7-dimethyl 8-ribityllumazine. To provide the basis for a biosensor based on the lux gene from bioluminescent bacteria of Photobacterium leiognathi, the gene coding for N-terminal domain half of the lumazine protein extending to amino acid 112 (N-LumP) and the gene for whole lumazine protein (W-LumP) from P. leiognathi were introduced by polymerase chain reaction (PCR) and ligated into pRFN4 vector, to construct the recombinant plasmids of N-lumP-pRFN4 and W-lumP-pRFN4 as well as their modified plasmids by insertion of the lux promoter. The expression of the genes in the recombinant plasmids was checked in various Escherichia coli strains, and the fluorescence intensity in Escherichia coli 43R can even be observed in a single cell. These results concerning the co-expression of the genes coding for lumazine protein and for riboflavin synthesis raise the possibility to generate fluorescent bacteria which can be used in the Citation: Lim, S.; Oh, E.; Choi, M.; field of bio-imaging. -
Pathogenic Mechanisms of Photobacterium Damselae Subspecies Piscicida in Hybrid Striped Bass Ahmad A
Louisiana State University LSU Digital Commons LSU Doctoral Dissertations Graduate School 2002 Pathogenic mechanisms of Photobacterium damselae subspecies piscicida in hybrid striped bass Ahmad A. Elkamel Louisiana State University and Agricultural and Mechanical College, [email protected] Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_dissertations Part of the Veterinary Pathology and Pathobiology Commons Recommended Citation Elkamel, Ahmad A., "Pathogenic mechanisms of Photobacterium damselae subspecies piscicida in hybrid striped bass" (2002). LSU Doctoral Dissertations. 773. https://digitalcommons.lsu.edu/gradschool_dissertations/773 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Doctoral Dissertations by an authorized graduate school editor of LSU Digital Commons. For more information, please [email protected]. PATHOGENIC MECHANISMS OF PHOTOBACTERIUM DAMSELAE SUBSPECIES PISCICIDA IN HYBRID STRIPED BASS A Dissertation Submitted to the Graduate Faculty of the Louisiana State University and Agricultural and Mechanical College in partial fulfillment of the requirements for the degree of Doctor of Philosophy in The Department of Pathobiological Sciences by Ahmad A. Elkamel B.V. Sc., Assiut University, 1993 May 2002 DEDICATION This work is dedicated to the people in my life who encouraged each step of my academic career. My mother was anxious as I was for each exam or presentation. I have been always looking to my Dad as a model, and trying to follow his footsteps in academic career. My wife stood by me like no other one in the world, and her love and support helped me see one of my dreams come true. -
Short Communication Isolation of Bioluminescent Bacteria From
Indian Journal of Geo Marine Sciences Vol. 49 (03), March 2020, pp. 471-476 Short Communication Isolation of bioluminescent bacteria from widely distributed light emitting organisms are marine organisms luminescent bacteria. Such bioluminescent bacteria are either found in planktonic form in the ocean6-12 or Paritosh Parmar, Arpit Shukla, Meenu Saraf & Baldev Patel* in symbiotic relationship with the marine host for instance certain fishes and squids2,8,13-17. Department of Microbiology & Biotechnology, University School of Sciences, Gujarat University, Ahmedabad-380 009, India The reaction which is responsible for emission of *[E-mail: [email protected]] light involves the enzyme luciferase that oxidizes long chain aliphatic aldehyde (RCHO), reduced flavin Received 31 July 2018; 05 October 2018 mononucleotide (FMNH2), and oxygen (O2) to a long chain aliphatic acid (RCOOH), oxidized flavin Bioluminescence is an emission of cold light by enzyme driven reaction within certain living organisms. The most mononucleotide (FMN), and water (H2O). In this abundant and widely distributed light emitting organisms are process, the excess energy is liberated and emitted as luminescent bacteria. Such organisms are either found as free- luminescent blue-green light of 490 nm (Fig. 1)4. All living in the ocean or in symbiotic relationship with the marine luminescent bacteria are distributed among three host. To employ bioluminescence in environmental monitoring, 4,18 isolation of bioluminescent bacteria from the two different marine genera Vibrio, Photobacterium, Xenorhabdus . samples (sea water sample and various organs of squid and fish) However, recently one more genera Kurthia has also were collected from different sites of Veraval seashore and fish been reported to be luminescent19. -
16S Ribosomal DNA Sequencing Confirms the Synonymy of Vibrio Harveyi and V
DISEASES OF AQUATIC ORGANISMS Vol. 52: 39–46, 2002 Published November 7 Dis Aquat Org 16S ribosomal DNA sequencing confirms the synonymy of Vibrio harveyi and V. carchariae Eric J. Gauger, Marta Gómez-Chiarri* Department of Fisheries, Animal and Veterinary Science, 20A Woodward Hall, University of Rhode Island, Kingston, Rhode Island 02881, USA ABSTRACT: Seventeen bacterial strains previously identified as Vibrio harveyi (Baumann et al. 1981) or V. carchariae (Grimes et al. 1984) and the type strains of V. harveyi, V. carchariae and V. campbellii were analyzed by 16S ribosomal DNA (rDNA) sequencing. Four clusters were identified in a phylo- genetic analysis performed by comparing a 746 base pair fragment of the 16S rDNA and previously published sequences of other closely related Vibrio species. The type strains of V. harveyi and V. car- chariae and about half of the strains identified as V. harveyi or V. carchariae formed a single, well- supported cluster designed as ‘bona fide’ V. harveyi/carchariae. A second more heterogeneous clus- ter included most other strains and the V. campbellii type strain. Two remaining strains are shown to be more closely related to V. rumoiensis and V. mediterranei. 16S rDNA sequencing has confirmed the homogeneity and synonymy of V. harveyi and V. carchariae. Analysis of API20E biochemical pro- files revealed that they are insufficient by themselves to differentiate V. harveyi and V. campbellii strains. 16S rDNA sequencing, however, can be used in conjunction with biochemical techniques to provide a reliable method of distinguishing V. harveyi from other closely related species. KEY WORDS: Vibrio harveyi · Vibrio carchariae · Vibrio campbellii · Vibrio trachuri · Ribosomal DNA · Biochemical characteristics · Diagnostic · API20E Resale or republication not permitted without written consent of the publisher INTRODUCTION environmental sources (Ruby & Morin 1979, Orndorff & Colwell 1980, Feldman & Buck 1984, Grimes et al.