Bacterial Bioluminescence
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FDA: "Glowing" Seafood?
FDA: "Glowing" Seafood? http://web.archive.org/web/20080225162926/http://vm.cfsan.fda.gov/~ea... U.S. Food and Drug Administration Seafood Products Research Center July 1998 "GLOWING" SEAFOOD? by Patricia N. Sado* Introduction Seafood that produces a bright, blue-green light in the dark could be a meal from outer space or haute cuisine in a science fiction novel. The U. S. Food and Drug Administration (FDA) has received many consumer complaints about various seafood products "glowing" in the dark. Some of these consumers called their local health departments, poison control centers, and their U.S. Senator because they thought they had been poisoned by radiation. These consumers said they had trouble convincing people that their seafood was emitting light. One consumer took his imitation crabmeat to a local television station. Unfortunately his seafood had dried out and did not glow for the television reporters. Several consumers said that it took them many weeks before they found phone numbers for various government agencies to make inquiries. Several consumers thought their "glowing" seafood was due to phosphorescing phytoplankton, or even fluorescence. The consumers' seafood products "glowing" in the dark were not due to radiation or to fluorescence, which requires an ultraviolet light to trigger the reaction. These seafood products exhibited luminescence due to the presence of certain bacteria that are capable of emitting light. Luminescence by bacteria is due to a chemical reaction catalyzed by luciferase, a protein similar to that found in fireflies. The reaction involves oxidation of a reduced flavin mononucleotide and a long chain aliphatic aldehyde by molecular oxygen to produce oxidized flavin plus fatty acid and light (5, 12). -
Production of Acyl-Homoserine Lactone Quorum-Sensing Signals Is Wide- Spread in Gram-Negative Methylobacterium
J. Microbiol. Biotechnol. (2007), 17(2), 226–233 Production of Acyl-Homoserine Lactone Quorum-Sensing Signals is Wide- Spread in Gram-Negative Methylobacterium POONGUZHALI, SELVARAJ, MUNUSAMY MADHAIYAN, AND TONGMIN SA* Department of Agricultural Chemistry, Chungbuk National University, Cheongju, Chungbuk 361-763, Korea Received: August 2, 2006 Accepted: October 2, 2006 Abstract Members of Methylobacterium, referred as pink- knowledge on the Methylobacterium-plant interactions pigmented facultative methylotrophic bacteria, are frequently over the past two decades suggested interesting novel associated with terrestrial and aquatic plants, tending to form interactions between PPFMs and plants. Beneficial plant- aggregates on the phyllosphere. We report here that the production growth promoting bacteria interact with plants through of autoinducer molecules involved in the cell-to-cell signaling direct and indirect mechanisms. Direct mechanisms for the process, which is known as quorum sensing, is common among most part entail either providing the bacterial compounds Methylobacterium species. Several strains of Methylobacterium that promote plant growth or facilitating the uptake of were tested for their ability to produce N-acyl-homoserine nutrients; for example, production of phytohormones [9] lactone (AHL) signal molecules using different indicators. and siderophores [13]. The indirect effects occur through Most strains of Methylobacterium tested could elicit a suppression of one or more phytopathogenic microorganisms positive response in Agrobacterium tumefaciens harboring through biocontrol [20] or induction of plant defense lacZ fused to a gene that is regulated by autoinduction. The enzymes [14]. Beneficial effects of plant-Methylobacterium synthesis of these compounds was cell-density dependent, and associations have been suggested to be due to production the maximal activity was reached during the late exponential of phytohormones [22] and enzymes such as 1- to stationary phases. -
Chemical Communication Among Bacteria
Colloquium Chemical communication among bacteria Michiko E. Taga and Bonnie L. Bassler* Department of Molecular Biology, Princeton University, Princeton, NJ 08544-1014 Cell–cell communication in bacteria is accomplished through the Low GϩC Gram-positive bacteria typically use modified exchange of chemical signal molecules called autoinducers. This oligopeptides as autoinducers (15–17). These signals are gener- process, called quorum sensing, allows bacteria to monitor their ically referred to as autoinducing polypeptides (AIPs) (Fig. 1B). environment for the presence of other bacteria and to respond to AIPs are produced in the cytoplasm as precursor peptides and fluctuations in the number and͞or species present by altering are subsequently cleaved, modified, and exported. AIPs specif- particular behaviors. Most quorum-sensing systems are species- or ically interact with the external domains of membrane-bound group-specific, which presumably prevents confusion in mixed- two-component sensor kinase proteins. Interaction of the auto- species environments. However, some quorum-sensing circuits inducer with its cognate sensor stimulates the kinase activity of control behaviors that involve interactions among bacterial spe- the sensor kinase protein, resulting in the phosphorylation of its cies. These quorum-sensing circuits can involve both intra- and partner response regulator protein. The phosphorylated re- interspecies communication mechanisms. Finally, anti-quorum- sponse regulator protein binds DNA and alters the transcription sensing strategies are present in both bacteria and eukaryotes, and of target genes. Some examples of behaviors controlled by AIP these are apparently designed to combat bacteria that rely on quorum-sensing systems include genetic competence and sporu- cell–cell communication for the successful adaptation to particular lation in Bacillus subtilis (18, 19), competence for DNA uptake niches. -
Generation of Fluorescent Bacteria with the Genes Coding for Lumazine Protein and Riboflavin Biosynthesis
sensors Communication Generation of Fluorescent Bacteria with the Genes Coding for Lumazine Protein and Riboflavin Biosynthesis Sunjoo Lim, Eugeney Oh, Miae Choi, Euiho Lee and Chan-Yong Lee * Department of Biochemistry, Chungnam National University, Daejeon 34134, Korea; [email protected] (S.L.); [email protected] (E.O.); [email protected] (M.C.); [email protected] (E.L.) * Correspondence: [email protected]; Tel.: +82-42-821-5482 Abstract: Lumazine protein is a member of the riboflavin synthase superfamily and the intense fluorescence is caused by non-covalently bound to 6,7-dimethyl 8-ribityllumazine. The pRFN4 plasmid, which contains the riboflavin synthesis genes from Bacillus subtilis, was originally designed for overproduction of the fluorescent ligand of 6,7-dimethyl 8-ribityllumazine. To provide the basis for a biosensor based on the lux gene from bioluminescent bacteria of Photobacterium leiognathi, the gene coding for N-terminal domain half of the lumazine protein extending to amino acid 112 (N-LumP) and the gene for whole lumazine protein (W-LumP) from P. leiognathi were introduced by polymerase chain reaction (PCR) and ligated into pRFN4 vector, to construct the recombinant plasmids of N-lumP-pRFN4 and W-lumP-pRFN4 as well as their modified plasmids by insertion of the lux promoter. The expression of the genes in the recombinant plasmids was checked in various Escherichia coli strains, and the fluorescence intensity in Escherichia coli 43R can even be observed in a single cell. These results concerning the co-expression of the genes coding for lumazine protein and for riboflavin synthesis raise the possibility to generate fluorescent bacteria which can be used in the Citation: Lim, S.; Oh, E.; Choi, M.; field of bio-imaging. -
Isolation of the Autoinducer-Quenching Strain That Inhibits Lasr in Pseudomonas Aeruginosa
Int. J. Mol. Sci. 2014, 15, 6328-6342; doi:10.3390/ijms15046328 OPEN ACCESS International Journal of Molecular Sciences ISSN 1422-0067 www.mdpi.com/journal/ijms Article Isolation of the Autoinducer-Quenching Strain that Inhibits LasR in Pseudomonas aeruginosa Lixing Weng 1,*, Yuqian Zhang 2, Yuxiang Yang 3 and Lianhui Wang 2,* 1 School of Geography and Biological Information, Nanjing University of Posts and Telecommunications, Nanjing 210046, Jiangsu, China 2 Jiangsu Key Laboratory for Organic Electronics & Information Displays and Institute of Advanced Materials (IAM), Nanjing University of Posts and Telecommunications, 9 Wenyuan Road, Nanjing 210046, Jiangsu, China; E-Mail: [email protected] 3 Department of Microbiology and Microbial Engineering, School of Life Sciences, Fudan University, Shanghai 200433, China; E-Mail: [email protected] * Authors to whom correspondence should be addressed; E-Mails: [email protected] (L.We.); [email protected] (L.Wa.); Tel./Fax: +86-25-8586-6634 (L.We.); Tel.: +86-25-8586-6333 (L.Wa.); Fax: +86-25-8586-6396 (L.Wa.). Received: 4 July 2013; in revised form: 21 March 2014 / Accepted: 28 March 2014 / Published: 14 April 2014 Abstract: Quorum sensing (QS) has been recognized as a general phenomenon in microorganisms and plays an important role in many pathogenic bacteria. In this report, we used the Agrobacterium tumefaciens biosensor strain NT1 to rapidly screen for autoinducer-quenching inhibitors from bacteria. After initial screening 5389 isolates obtained from land and beach soil, 53 putative positive strains were identified. A confirmatory bioassay was carried out after concentrating the putative positive culture supernatant, and 22 strains were confirmed to have anti-LasR activity. -
Isolation and Identification of Bioluminescent Bacteria in Squid and Water of Malaysia
Int'l Journal of Advances in Agricultural & Environmental Engg. (IJAAEE) Vol. 1, Issue 2 (2014) ISSN 2349-1523 EISSN 2349-1531 Isolation And Identification Of Bioluminescent Bacteria In Squid And Water Of Malaysia Noor Aini Yaser1, Mohd Faiz Foong Abdullah2, Aslizah Mohd Aris3, Iwana Izni Zainudin3 also in marine ecosystem. Abstract— Bioluminescence is an emission of light that produce These bioluminescent bacteria reported belong to the class by chemical reaction of enzymatic activity and biochemical of the Gammaproteobacteria. Among the bioluminescent bacteria living organism. The most abundant and widely distributed light reported, 17 bioluminescent species were currently known [7]. emitting organism is luminous bacteria either found as free-living in The luminous bacteria were also classified into three genera the ocean or gut symbiont in the host. These sets of species are diversely spread in terrestrial environment, freshwater and also in which are Vibrio, Photobacterium and Xenorhabdus marine ecosystem. These species of bacteria emit blue-green light (Photorhabdus) and the species within the genus Vibrio and provoked by the enzyme luciferase and regulated by the lux gene Photobacterium are usually exist in marine environment and operon and emitted at 490 nm. Some of the uses of the Xenorhabdus belong to terrestrial environment. bioluminescence are as genetic reporters and biosensors. General Some of the natural important of the bioluminescence in microbiological techniques have been used to isolate bioluminescent nature is in attracting prey, camouflage, deterring predators bacteria from water samples and squid. The characterization of 6 isolates bioluminescent bacteria was conducted macroscopic and and in aiding in hunting [8]. microscopically and was further analyses at molecular level using Bioluminescence is the phenomenon that consists of light 16sDNA and sequenced for species identification. -
Quorum Sensing in Bacteria
17 Aug 2001 12:48 AR AR135-07.tex AR135-07.SGM ARv2(2001/05/10) P1: GDL Annu. Rev. Microbiol. 2001. 55:165–99 Copyright c 2001 by Annual Reviews. All rights reserved QUORUM SENSING IN BACTERIA Melissa B. Miller and Bonnie L. Bassler Department of Molecular Biology, Princeton University, Princeton, New Jersey 08544-1014; e-mail: [email protected], [email protected] Key Words autoinducer, homoserine lactone, two-component system, cell-cell communication, virulence ■ Abstract Quorum sensing is the regulation of gene expression in response to fluctuations in cell-population density. Quorum sensing bacteria produce and release chemical signal molecules called autoinducers that increase in concentration as a function of cell density. The detection of a minimal threshold stimulatory con- centration of an autoinducer leads to an alteration in gene expression. Gram-positive and Gram-negative bacteria use quorum sensing communication circuits to regulate a diverse array of physiological activities. These processes include symbiosis, virulence, competence, conjugation, antibiotic production, motility, sporulation, and biofilm for- mation. In general, Gram-negative bacteria use acylated homoserine lactones as au- toinducers, and Gram-positive bacteria use processed oligo-peptides to communicate. Recent advances in the field indicate that cell-cell communication via autoinducers occurs both within and between bacterial species. Furthermore, there is mounting data suggesting that bacterial autoinducers elicit specific responses from host organisms. Although the nature of the chemical signals, the signal relay mechanisms, and the target genes controlled by bacterial quorum sensing systems differ, in every case the ability to communicate with one another allows bacteria to coordinate the gene expression, and therefore the behavior, of the entire community. -
Making Informed Decisions: Regulatory Interactions Between Two-Component Systems
Review TRENDS in Microbiology Vol.11 No.8 August 2003 359 Making informed decisions: regulatory interactions between two-component systems Jetta J.E. Bijlsma and Eduardo A. Groisman Department of Molecular Microbiology, Howard Hughes Medical Institute, Washington University School of Medicine, Campus Box 8230, 660 S. Euclid Avenue, St Louis, MO 63110, USA Bacteria experience a multitude of stresses in the com- phosphorylate from small molecular weight phosphoryl plex niches they inhabit. These stresses are denoted by donors, such as acetyl phosphate and carbamoyl phos- specific signals that typically alter the activity of individ- phate [3,4]. In addition, the vast majority of sensor kinases ual two-component regulatory systems. Processing of exhibit phosphatase activity towards their cognate multiple signals by different two-component systems response regulators. Although most two-component sys- occurs when multiple sensors interact with a single tems entail a single His-to-Asp phosphotransfer event response regulator, by phosphatases interrupting phos- between a histidine kinase and a response regulator, there phoryl transfer in phosphorelays and through transcrip- is a subset that consists of a three-step His-Asp-His-Asp tional and post-transcriptional mechanisms. Gaining phosphorelay (Fig. 1b) [1,2]. The extra phosphorylatable insight into these mechanisms provides an understand- domains in a phosphorelay can be present in separate ing at the molecular level of bacterial adaptation to ever proteins or be part of multi-domain (i.e. -
BIOSCIENCE EXPLAINED, 2001 Bioscience | Explained Vol 1 | No 1
bioscience | explained Vol 1 | No 1 Edith A. Widder Harbor Branch Oceanographic Institution, Fort Pierce, Florida Marine bioluminescence Why do so many animals in the open ocean make light? Who makes light and why? Bioluminescence is visible light made by living creatures. Such creatures are rare on land but extremely common in the oceans. A list of some of the many different kinds of bioluminescent creatures in the world, classified by the different environments in which they live, gives some sense of the relative significance of bioluminescence in the marine environment, compared to in the terrestrial and freshwater realms (Table 1). Bioluminescent creatures occur in all oceans at all depths with the greatest numbers found in the upper 1000 m of the vast open ocean. The prevalence of bioluminescence here is a consequence of the unique visual characteristics of this environment. This is a world without hiding places where sunlight filtering down through the depths decreases approximately 10-fold for every 75 m of descent until all visible light disappears below 1000 m. In this twilight realm the light is dim and blue and highly directional so that the only creatures that are visible are those directly overhead or those that produce their own light with bioluminescence. In this context bioluminescence can aid in the survival of an organism in three critical ways: 1. Bioluminescence can help an animal find food. When looking for something in the dark a flashlight is a very handy tool and many animals have built-in bioluminescent flashlights. The aptly named flashlight fish is a good example (Video clip 1). -
Characterisation of the ATP-Binding Cassette Transporters Of
Characterisation Of The ATP-Binding Cassette Transporters Of Pseudomonas aeruginosa Victoria Grace Pederick Research Centre for Infectious Diseases, Department of Microbiology and Immunology, School of Molecular and Biomedical Sciences, University of Adelaide October 2014 TABLE OF CONTENTS ABSTRACT ............................................................................................................................... V DECLARATION .................................................................................................................... VII COPYRIGHT STATEMENT ................................................................................................ VIII ABBREVIATIONS ................................................................................................................. IX TABLE OF TABLES ............................................................................................................. XII TABLE OF FIGURES ........................................................................................................... XIII ACKNOWLEDGEMENTS .................................................................................................... XV CHAPTER 1: INTRODUCTION ........................................................................................ 1 Pseudomonas aeruginosa ........................................................................................... 1 1.1.1. P. aeruginosa and human disease ......................................................................... 1 1.1.1.1. Cystic -
Enhanced Fluorescence Nanoimaging
Ultraluminescent gold core–shell nanoparticles applied to individual bacterial detection based on metal- enhanced fluorescence nanoimaging Daniela Gontero Alicia V. Veglia Denis Boudreau Angel Guillermo Bracamonte Daniela Gontero, Alicia V. Veglia, Denis Boudreau, Angel Guillermo Bracamonte, “Ultraluminescent gold core–shell nanoparticles applied to individual bacterial detection based on metal-enhanced fluorescence nanoimaging,” J. Nanophoton. 12(1), 012505 (2017), doi: 10.1117/1.JNP.12.012505. Ultraluminescent gold core–shell nanoparticles applied to individual bacterial detection based on metal-enhanced fluorescence nanoimaging Daniela Gontero,a Alicia V. Veglia,b Denis Boudreau,c and Angel Guillermo Bracamonteb,* aLaboratorio de Análisis Clínicos y Bacteriológicos, Clínica de la Familia II. Río Tercero, Córdoba, Argentina bUniversidad Nacional de Córdoba, Instituto de Investigaciones en Físico Química de Córdoba (INFIQC), Departamento de Química Orgánica, Facultad de Ciencias Químicas, Ciudad Universitaria, Córdoba, Argentina cUniversité Laval, Centre d’Optique, Photonique et Laser, Département de Chimie, Québec, Canada Abstract. Gold core–shell nanoparticles were synthesized based on metallic cores, variable silica shell spacers covered with modified fluorescent silica layers. Ultraluminescent properties were obtained based on metal-enhanced fluorescence (MEF). Different silica spacers were syn- thesized to optimize the MEF enhancement factor (MEFEF). An optimal MEFEF was determined d− − ¼ equal to 9.5 for shorter silica spacers ( SiO2 10 nm). These nanoparticles were deposed on Escherichia coli bacteria at different concentration levels for Bioimaging generation over their surfaces. The best luminescent nanoparticles were deposed on intermediate and higher bacteria concentrations. In the presence of intermediate bacteria concentrations, the ultraluminescent nanoparticles adsorbed showed an increase of 35% to 45% compared with individual nanopar- ticles. -
Oral Microbiota and Helicobacter Pylori in Gastric Carcinogenesis: What Do We Know and Where Next? Seyedeh Zahra Bakhti and Saeid Latifi-Navid*
Bakhti and Latifi-Navid BMC Microbiology (2021) 21:71 https://doi.org/10.1186/s12866-021-02130-4 REVIEW Open Access Oral microbiota and Helicobacter pylori in gastric carcinogenesis: what do we know and where next? Seyedeh Zahra Bakhti and Saeid Latifi-Navid* Abstract Gastric cancer (GC) is one of the most common malignancies causing death worldwide, and Helicobacter pylori is a powerful inducer of precancerous lesions and GC. The oral microbiota is a complex ecosystem and is responsible for maintaining homeostasis, modulating the immune system, and resisting pathogens. It has been proposed that the gastric microbiota of oral origin is involved in the development and progression of GC. Nevertheless, the causal relationship between oral microbiota and GC and the role of H. pylori in this relationship is still controversial. This study was set to review the investigations done on oral microbiota and analyze various lines of evidence regarding the role of oral microbiota in GC, to date. Also, we discussed the interaction and relationship between H. pylori and oral microbiota in GC and the current understanding with regard to the underlying mechanisms of oral microbiota in carcinogenesis. More importantly, detecting the patterns of interaction between the oral cavity microbiota and H. pylori may render new clues for the diagnosis or screening of cancer. Integration of oral microbiota and H. pylori might manifest a potential method for the assessment of GC risk. Hence it needs to be specified the patterns of bacterial transmission from the oral cavity to the stomach and their interaction. Further evidence on the mechanisms underlying the oral microbiota communities and how they trigger GC may contribute to the identification of new prevention methods for GC.