The Function of PROTOPORPHYRINOGEN IX OXIDASE in Chlorophyll Biosynthesis Requires Oxidised Plastoquinone in Chlamydomonas Reinh
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1 Introduction
Introduction 1 1 Introduction Tetrapyrroles belong to a group of molecules with a common structure. They are synthesized in a branched pathway, in which various end products are formed to different amounts. The most abundant cyclic tetrapyrroles are chlorophyll (Chl) and heme, which are characterized by a chelated magnesium and ferrous ion, respectively. Chlorophyll is involved in light absorption and energy transduction during photosynthesis. Heme is a cofactor of hemoglobin, cytochromes, P450 mixed-function oxygenases, and catalases. Other members of the class of tetrapyrroles include siroheme (the prosthetic group of nitrite and sulphite reductases) and phytochromobilin, the chromophore of phytochrome, which is involved in light perception. Tetrapyrrole biosynthesis has been the subject of numerous studies over several decades. But genetic and biochemical characterization of tetrapyrrole biosynthesis has progressed by using approaches to genetically dissect the tetrapyrrole biosynthetic pathway. Pigment-deficient mutants and antisense technology have proved to be useful for examining the mechanisms of metabolic control or for analyzing biochemically the enzymatic steps which are affected by the mutation or by the antisense RNA expression. Tetrapyrrole intermediates are highly photoreactive. They can easily be excited and transfer the energy or electrons to O2. Then reactive oxygen species (ROS) are produced upon exposure to light and oxygen. Under normal growth conditions the risk of photooxidative damage from intermediates in tetrapyrrole biosynthesis is low. Excessive accumulation of such intermediates is the result of deregulation of tetrapyrrole biosynthesis. Toxic effects of porphyrins are evident in human patients with deficiencies of one of the enzymes of heme biosynthesis. These patients are suffering from metabolic diseases, which are called porphyrias (Moore, 1993). -
Mitochondrial Transport of Protoporphyrinogen IX in Erythroid Cells
www.impactjournals.com/oncotarget/ Oncotarget, Vol. 6, No. 25 Editorial Mitochondrial transport of protoporphyrinogen IX in erythroid cells Yvette Y. Yien, Alessa R. Ringel and Barry H. Paw Comment on: Yien Y, et al. TMEM14C is required for erythroid mitochondrial heme metabolism. J. Clin. Invest. 2014; 124:4294-4304. Heme plays a vital role in essential processes factors, indicating the presence of extragenic modifiers of such as detoxification, oxygen transport, circadian the disease that participate in the heme synthesis pathway. rhythm, microRNA processing, respiration, regulation Among potential modifiers are the genes required for of transcription and translation, and apoptosis. The the transport of heme, heme intermediates and iron majority of heme in the body is synthesized in red blood (summarized in Figure 1). One such example is a loss-of- cells, whose function is to transport oxygen via the function mutation in MFRN1 (SLC25A37), the erythroid heme-containing oxygen carrier protein, hemoglobin. mitochondrial iron transporter, which exacerbated Defects in erythroid heme homeostasis can result in protoporphyrin IX accumulation due to a gain-of-function anemia, caused by the decrease in hemoglobin synthesis, C-terminal deletion in ALAS2 [2]. porphyria, caused by accumulation of photoreactive heme In an RNAseq screen for transporters of heme intermediates, and iron overload [1]. intermediates in terminally differentiating erythroid Heme synthesis requires the coordinated transport cells, we identified Tmem14c as a gene that is required of heme intermediates and iron within the cell and across for heme synthesis and erythropoiesis in zebrafish and membranes to provide substrates access to enzymes, mice [3]. TMEM14C is an inner mitochondrial membrane prevent intercalation of photo-reactive heme intermediates protein with three tightly packed transmembrane into cellular membranes, and minimize generation of helices, predictive of its function as a transporter [4]. -
Evidence for the Role of Endogenous Carbon Monoxide in Memory Processing
Evidence for the Role of Endogenous Carbon Monoxide in Memory Processing M. C. Cutajar and T. M. Edwards Downloaded from http://mitprc.silverchair.com/jocn/article-pdf/19/4/557/1816404/jocn.2007.19.4.557.pdf by guest on 18 May 2021 Abstract & For a decade and a half, nitric oxide (NO) has been impli- number of electrophysiological investigations have concluded cated in memory processing across a wide variety of tasks and that endogenous CO is involved in long-term potentiation. species. Comparatively, endogenously produced carbon mon- Although not evidence for a role in memory per se, these oxide (CO) has lagged behind as a target for research into the studies did point to the possible importance of CO in mem- pharmacological processes underlying memory formation. This ory processing. In addition, there is now evidence to suggest is surprising given that CO is formed in memory-associated that endogenous CO is important in avoidance learning and brain regions, is structurally similar to NO, and along with possible for other tasks. This review therefore seeks to pro- NO can activate guanylate cyclase, which is an enzyme well mote endogenous CO as a potentially important target for characterized in memory processing. Nevertheless, a limited memory research. & INTRODUCTION important in memory processing (Kemenes, Kemenes, Carbon monoxide (CO) is traditionally thought of as Andrew, Benjamin, & O’Shea, 2002; Izquierdo et al., an air pollutant. Indeed, inhalation of environmental 2000; Bernabeu et al., 1997; Kendrick et al., 1997). By CO in sufficient quantities may lead to intoxication detailing the evidence for CO production in the hippo- through the production of carbonmonoxyhemoglobin, campus, its role in synaptic plasticity and those few which results in decreased oxygen storage and trans- behavioral studies implicating CO in memory consoli- port in the bloodstream. -
TION of BUCKWHEAT. It Has Been Known for a Long Time That Certain
PHOTOSENSITIZATION OF ANIMALS AFTER THE INGES- TION OF BUCKWHEAT. BY CHARLES SHEARD, PH.D., HAROLD D. CAYLOR, M.D., AND CARL SCHLOTTHAUER, D.V.M. (From tke Section on Pkysics and Biophysical Research, tke Section on Surgical Pathology, and the Division of Experimental Palhdogy and Surgery, Mayo Clinic and The Mayo Foundation, Rochester, Minnesota.) (Received for publication,~'March 1, 1928.) It has been known for a long time that certain animals, following the ingestion of various substances, are rendered sensitive to certain types of radiant energy. The present study covers biologic and physical observations on the degree of sensitization, the character of the sensitizing light and the nature of the photodynamic substance of buckwheat. White rabbits, mice, rats, goats, swine, dogs and varicolored guinea pigs were studied. Sunlight, carbon arc lamp (Efka or Hoffman) with Conradty-Norris vacuum carbon electrodes and quartz mercury vapor arcs (Victor X-Ray Corporation), both with and without various filters, were employed for irradiation. All of these sources contain infra-red, visible and ultra-violet radiations. I~SLr~ OF LITERATURE. Considerable literature, especially European, has appeared on the subject of diseases in animals and man brought about by optical sensitization. Somewhat detailed accounts of the contributions relative to diseases due to exogenous sensi- tization are to be found in the brochures by Hausmann and by Mayer. Years ago European stockmen found that in certain animals which had ingested buckwheat (plant or seed), erythema, itching, edema and convulsions developed and, in many cases, paralysis and death, on exposure to out-of-door sunshine. However, untoward symptoms did not arise if the animals were kept indoors or in partial darkness and they recovered from the sensitization induced by eating certain plants if they were removed from the light early in the onset of the symp- toms. -
Hyperbilirubinemia
Porphyrins Porphyrins (Porphins) are cyclic tetrapyrol compounds formed by the linkage )). of four pyrrole rings through methenyl bridges (( HC In the reduced porphyrins (Porphyrinogens) the linkage of four pyrrole rings (tetrapyrol) through methylene bridges (( CH2 )) The characteristic property of porphyrins is the formation of complexes with the metal ion bound to nitrogen atoms of the pyrrole rings. e.g. Heme (iron porphyrin). Proteins which contain heme ((hemoproteins)) are widely distributed e.g. Hemoglobin, Myoglobin, Cytochromes, Catalase & Tryptophan pyrrolase. Natural porphyrins have substituent side chains on the eight hydrogen atoms numbered on the pyrrole rings. These side chains are: CH 1-Methyl-group (M)… (( 3 )) 2-Acetate-group (A)… (( CH2COOH )) 3-Propionate-group (P)… (( CH2CH2COOH )) 4-Vinyl-group (V)… (( CH CH2 )) Porphyrins with asymmetric arrangement of the side chains are classified as type III porphyrins while those with symmetric arrangement of the side chains are classified as type I porphyrins. Only types I & III are present in nature & type III series is more important because it includes heme. 1 Heme Biosynthesis Heme biosynthesis occurs through the following steps: 1-The starting reaction is the condensation between succinyl-CoA ((derived from citric acid cycle in the mitochondria)) & glycine, this reaction is a rate limiting reaction in the hepatic heme synthesis, it occurs in the mitochondria & is catalyzed by ALA synthase (Aminolevulinate synthase) enzyme in the presence of pyridoxal phosphate as a cofactor. The product of this reaction is α-amino-β-ketoadipate which is rapidly decarboxylated to form δ-aminolevulinate (ALA). 2-In the cytoplasm condensation reaction between two molecules of ALA is catalyzed by ALA dehydratase enzyme to form two molecules of water & one 2 molecule of porphobilinogen (PBG) which is a precursor of pyrrole. -
Noncanonical Coproporphyrin-Dependent Bacterial Heme Biosynthesis Pathway That Does Not Use Protoporphyrin
Noncanonical coproporphyrin-dependent bacterial heme biosynthesis pathway that does not use protoporphyrin Harry A. Daileya,b,c,1, Svetlana Gerdesd, Tamara A. Daileya,b,c, Joseph S. Burcha, and John D. Phillipse aBiomedical and Health Sciences Institute and Departments of bMicrobiology and cBiochemistry and Molecular Biology, University of Georgia, Athens, GA 30602; dMathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL 60439; and eDivision of Hematology, Department of Medicine, University of Utah School of Medicine, Salt Lake City, UT 84132 Edited by J. Clark Lagarias, University of California, Davis, CA, and approved January 12, 2015 (received for review August 25, 2014) It has been generally accepted that biosynthesis of protoheme of a “primitive” pathway in Desulfovibrio vulgaris (13). This path- (heme) uses a common set of core metabolic intermediates that way, named the “alternative heme biosynthesis” path (or ahb), has includes protoporphyrin. Herein, we show that the Actinobacteria now been characterized by Warren and coworkers (15) in sulfate- and Firmicutes (high-GC and low-GC Gram-positive bacteria) are reducing bacteria. In the ahb pathway, siroheme, synthesized unable to synthesize protoporphyrin. Instead, they oxidize copro- from uroporphyrinogen III, can be further metabolized by suc- porphyrinogen to coproporphyrin, insert ferrous iron to make Fe- cessive demethylation and decarboxylation to yield protoheme (14, coproporphyrin (coproheme), and then decarboxylate coproheme 15) (Fig. 1 and Fig. S1). A similar pathway exists for protoheme- to generate protoheme. This pathway is specified by three genes containing archaea (15, 16). named hemY, hemH, and hemQ. The analysis of 982 representa- Current gene annotations suggest that all enzymes for pro- tive prokaryotic genomes is consistent with this pathway being karyotic heme synthetic pathways are now identified. -
Chlorophyll Biosynthesis
Chlorophyll Biosynthesis: Various Chlorophyllides as Exogenous Substrates for Chlorophyll Synthetase Jürgen Benz and Wolfhart Rüdiger Botanisches Institut, Universität München, Menziger Str. 67, D-8000 München 19 Z. Naturforsch. 36 c, 51 -5 7 (1981); received October 10, 1980 Dedicated to Professor Dr. H. Merxmüller on the Occasion of His 60th Birthday Chlorophyllides a and b, Protochlorophyllide, Bacteriochlorophyllide a, 3-Acetyl-3-devinylchlo- rophyllide a, Pyrochlorophyllide a, Pheophorbide a The esterification of various chlorophyllides with geranylgeranyl diphosphate was investigated as catalyzed by the enzyme chlorophyll synthetase. The enzyme source was an etioplast membrane fraction from etiolated oat seedlings ( Avena sativa L.). The following chlorophyllides were prepared from the corresponding chlorophylls by the chlorophyllase reaction: chlorophyllide a (2) and b (4), bacteriochlorophyllide a (5), 3-acetyl-3-devinylchlorophyllide a (6), and pyro chlorophyllide a (7). The substrates were solubilized with cholate which reproducibly reduced the activity of chlorophyll synthetase by 40-50%. It was found that the following compounds were good substrates for chlorophyll synthetase: chlorophyllide a and b, 3-acetyl-3-devinylchloro- phyllide a, and pyrochlorophyllide a. Only a poor or no reaction was found with protochloro phyllide, pheophorbide a, and bacteriochlorophyllide. This difference of reactivity was not due to distribution differences of the substrates between solution and pelletable membrane fraction. Furthermore, no interference between good and poor substrate was detected. Structural features necessary for chlorophyll synthetase substrates were discussed. Introduction Therefore no exogenous 2 was applied. The only substrate was 2 formed by photoconversion of endo The last steps of chlorophyll a (Chi a) biosynthe genous Protochlide (1) in the etioplast membrane. -
Magnesium-Protoporphyrin Chelatase of Rhodobacter
Proc. Natl. Acad. Sci. USA Vol. 92, pp. 1941-1944, March 1995 Biochemistry Magnesium-protoporphyrin chelatase of Rhodobacter sphaeroides: Reconstitution of activity by combining the products of the bchH, -I, and -D genes expressed in Escherichia coli (protoporphyrin IX/tetrapyrrole/chlorophyll/bacteriochlorophyll/photosynthesis) LUCIEN C. D. GIBSON*, ROBERT D. WILLOWSt, C. GAMINI KANNANGARAt, DITER VON WETTSTEINt, AND C. NEIL HUNTER* *Krebs Institute for Biomolecular Research and Robert Hill Institute for Photosynthesis, Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, S10 2TN, United Kingdom; and tCarlsberg Laboratory, Department of Physiology, Gamle Carlsberg Vej 10, DK-2500 Copenhagen Valby, Denmark Contributed by Diter von Wettstein, November 14, 1994 ABSTRACT Magnesium-protoporphyrin chelatase lies at Escherichia coli and demonstrate that the extracts of the E. coli the branch point of the heme and (bacterio)chlorophyll bio- transformants can convert Mg-protoporphyrin IX to Mg- synthetic pathways. In this work, the photosynthetic bacte- protoporphyrin monomethyl ester (20, 21). Apart from posi- rium Rhodobacter sphaeroides has been used as a model system tively identifying bchM as the gene encoding the Mg- for the study of this reaction. The bchH and the bchI and -D protoporphyrin methyltransferase, this work opens up the genes from R. sphaeroides were expressed in Escherichia coli. possibility of extending this approach to other parts of the When cell-free extracts from strains expressing BchH, BchI, pathway. In this paper, we report the expression of the genes and BchD were combined, the mixture was able to catalyze the bchH, -I, and -D from R. sphaeroides in E. coli: extracts from insertion of Mg into protoporphyrin IX in an ATP-dependent these transformants, when combined in vitro, are highly active manner. -
Surprising Roles for Bilins in a Green Alga Jean-David Rochaix1 Departments of Molecular Biology and Plant Biology, University of Geneva,1211 Geneva, Switzerland
COMMENTARY COMMENTARY Surprising roles for bilins in a green alga Jean-David Rochaix1 Departments of Molecular Biology and Plant Biology, University of Geneva,1211 Geneva, Switzerland It is well established that the origin of plastids which serves as chromophore of phyto- can be traced to an endosymbiotic event in chromes (Fig. 1). An intriguing feature of which a free-living photosynthetic prokaryote all sequenced chlorophyte genomes is that, invaded a eukaryotic cell more than 1 billion although they lack phytochromes, their years ago. Most genes from the intruder genomes encode two HMOXs, HMOX1 were gradually transferred to the host nu- andHMOX2,andPCYA.InPNAS,Duanmu cleus whereas a small number of these genes et al. (6) investigate the role of these genes in were maintained in the plastid and gave the green alga Chlamydomonas reinhardtii rise to the plastid genome with its associated and made unexpected findings. protein synthesizing system. The products of Duanmu et al. first show that HMOX1, many of the genes transferred to the nucleus HMOX2, and PCYA are catalytically active were then retargeted to the plastid to keep it and produce bilins in vitro (6). They also functional. Altogether, approximately 3,000 demonstrate in a very elegant way that these nuclear genes in plants and algae encode proteins are functional in vivo by expressing plastid proteins, whereas chloroplast ge- a cyanobacteriochrome in the chloroplast Fig. 1. Tetrapyrrole biosynthetic pathways. The heme nomes contain between 100 and 120 genes of C. reinhardtii, where, remarkably, the and chlorophyll biosynthetic pathways diverge at pro- (1). A major challenge for eukaryotic pho- photoreceptor is assembled with bound toporphyrin IX (ProtoIX). -
UTMB Testing Packet/Order Form
Galveston Porphyria Laboratory The University of Texas Medical Branch Galveston, Texas Instructions for Collecting, Processing and Shipping Samples for Porphyria Testing This packet contains the following: • Instructions for collecting, processing and shipping samples • Order form for testing • A primer on laboratory testing for porphyrias Updated 9 June 2021 Page 1 Instructions for Collecting, Processing and Shipping Samples I. Sample Collection and Processing GENERAL INSTRUCTIONS 1. Types of samples used for porphyria testing (For choice of tests, see the attached Primer): a. Urine – spot (random or single void) urine sample is recommended with no preservative. A first-void sample on arising in the morning is preferred. i. Creatinine is measured on all urine samples for “normalization” of the results. The amount of creatinine excreted every day is quite constant because it reflects muscle mass. Most adults excrete 1-2 grams of creatinine daily in urine. Expressing results per gram of creatinine corrects for variation in the hydration state of the patient over time. The sample should be light protected (e.g. by wrapping the container in aluminum foil) and immediately refrigerated or frozen. ii. A 24-hour collection is also suitable, but 5 gm of sodium carbonate (not sodium bicarbonate) should be added to the container before starting the collection, the container should be refrigerated and protected from light during the collection (e.g. by using a dark-colored plastic collection bottle). The total volume must be measured in a single container and only a portion (an “aliquot”) sent to the laboratory for testing. Detailed instructions on how to properly collect a 24-hour urine must be given verbally to the patient along with the container containing the preservative. -
I Topic - Algal Pigments and Algal Classification(ALGAE) Prepared by –Prof.(Dr.)Jainendra Kumar Coordinated By: Prof.(Dr) Shyam Nandan Prasad
Course- M.Sc. Botany Part -I Paper -I Topic - Algal Pigments and algal Classification(ALGAE) Prepared by –Prof.(Dr.)Jainendra Kumar Coordinated by: Prof.(Dr) Shyam Nandan Prasad The algae were broadly divided by F.F.Fritsch (1935) into eleven classes according to their colour - 1. Chlorophyceae or green algae 2. Xanthophyceae or yellow-green algae 3. Chrysophyceae 4. Bacillariophyceae or golden-brown algae 5. Cryptophyceae 6. Dinophyceae 7. Chloromonadineae 8. Eugleninae 9. Phaeophyceae or brown algae 10. Rhodophyceae or red algae, and 11. Myxophyceae or blue-green algae Normally, classification of algae is based on - 1. Nuclear Organization 2. Nature of Cell Wall Components 3. Pigmentation and Photosynthetic Apparatus The pigment is one of the most important criteria used in differentiation of classes in algae. The pigments in algae can be chlorophylls, carotenoids and biloproteins. These pigments are present in sac like structures called thylakoids. The thylakoids are arranged in stacks in the granum of the chloroplasts. Different groups of algae have different types of pigments and organization of thylakoids in chloroplast. The chlorophylls in algae are chlorophyll a, b, c, d and e types. Chlorophyll a is present in all classes of algae. Chlorophyll b is primary pigment of Chlorophyceae and Euglenineae. Chlorophyll c is found in Phaeophyceae and Cryptophyceae. Chlorophyll d is found in Rhodophyceae. Chlorophyll e is confined to Tribonema of Xanthophyceae. Pigments are chemical compounds which reflect only certain wavelengths of visible light. This makes them appear colourful. More important than their reflection of light is the ability of pigments to absorb certain wavelengths. Since each pigment reacts with only a narrow range of the spectrum, it is important for algae to produce pigments of different colours to capture more of the sun's energy. -
Quantify Chlorophyll a and Chlorophyll B with a Custom Method
APPLICATION NOTE NanoDrop One/OneC No. T141 Quantify chlorophyll a and chlorophyll b with a custom method Using the NanoDrop One Spectrophotometer Abstract Scientists can accurately quantify chlorophyll a and chlorophyll b on the Thermo Scientific™ NanoDrop™ One/OneC Microvolume UV-Vis Spectrophotometer using a user-defined custom method. Introduction Chlorophyll a is the principal pigment that converts light energy to chemical energy, and chlorophyll b is the accessory photosynthetic pigment that transfers light it absorbs to chlorophyll a. Chlorophyll a is found in all plants, green algae, and cyanobacteria, and chlorophyll b is found in plants and green algae. Chlorophyll quantitation is valuable in a vast array of disciplines including but not limited to plant biology, environmental science, ecotoxicology, disease prevention, and medical drug discovery. Spectrophotometry is a common method used to measure the absorbance of light by the chlorophyll molecules. The NanoDrop One/OneC UV-Vis Spectrophotometer can be used to measure the absorbance of chlorophyll. Chlorophyll a and chlorophyll b absorb light at slightly different wavelengths. peaks (Figure 1). With this information, a user-defined Chlorophyll a absorbs light at 433 nm and 666 nm custom method including user-defined formulas can be and chlorophyll b absorbs light at 462 nm and 650 created to measure the absorbance and determine the nm. The NanoDrop One/OneC UV-Vis application can concentration of chlorophyll. be used to observe the spectrum of each chlorophyll a and chlorophyll b and identify major absorbance chlorophyll a Figure 2. Chlorophyll Content custom method created to quantify chlorophyll a and chlorophyll b samples suspended in 100% DMSO.