Magnesium-Protoporphyrin Chelatase of Rhodobacter
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Evidence for the Role of Endogenous Carbon Monoxide in Memory Processing
Evidence for the Role of Endogenous Carbon Monoxide in Memory Processing M. C. Cutajar and T. M. Edwards Downloaded from http://mitprc.silverchair.com/jocn/article-pdf/19/4/557/1816404/jocn.2007.19.4.557.pdf by guest on 18 May 2021 Abstract & For a decade and a half, nitric oxide (NO) has been impli- number of electrophysiological investigations have concluded cated in memory processing across a wide variety of tasks and that endogenous CO is involved in long-term potentiation. species. Comparatively, endogenously produced carbon mon- Although not evidence for a role in memory per se, these oxide (CO) has lagged behind as a target for research into the studies did point to the possible importance of CO in mem- pharmacological processes underlying memory formation. This ory processing. In addition, there is now evidence to suggest is surprising given that CO is formed in memory-associated that endogenous CO is important in avoidance learning and brain regions, is structurally similar to NO, and along with possible for other tasks. This review therefore seeks to pro- NO can activate guanylate cyclase, which is an enzyme well mote endogenous CO as a potentially important target for characterized in memory processing. Nevertheless, a limited memory research. & INTRODUCTION important in memory processing (Kemenes, Kemenes, Carbon monoxide (CO) is traditionally thought of as Andrew, Benjamin, & O’Shea, 2002; Izquierdo et al., an air pollutant. Indeed, inhalation of environmental 2000; Bernabeu et al., 1997; Kendrick et al., 1997). By CO in sufficient quantities may lead to intoxication detailing the evidence for CO production in the hippo- through the production of carbonmonoxyhemoglobin, campus, its role in synaptic plasticity and those few which results in decreased oxygen storage and trans- behavioral studies implicating CO in memory consoli- port in the bloodstream. -
Significance and Implications of Vitamin B-12 Reaction Shema- ETH ZURICH VARIANT: Mechanisms and Insights
Taylor University Pillars at Taylor University Student Scholarship: Chemistry Chemistry and Biochemistry Fall 2019 Significance and Implications of Vitamin B-12 Reaction Shema- ETH ZURICH VARIANT: Mechanisms and Insights David Joshua Ferguson Follow this and additional works at: https://pillars.taylor.edu/chemistry-student Part of the Analytical Chemistry Commons, Inorganic Chemistry Commons, Organic Chemistry Commons, Other Chemistry Commons, and the Physical Chemistry Commons CHEMISTRY THESIS SIGNIFICANCE AND IMPLICATIONS OF VITAMIN B-12 REACTION SCHEMA- ETH ZURICH VARIANT: MECHANISMS AND INSIGHTS DAVID JOSHUA FERGUSON 2019 2 Table of Contents: Chapter 1 6 Chapter 2 17 Chapter 3 40 Chapter 4 59 Chapter 5 82 Chapter 6 118 Chapter 7 122 Appendix References 3 Chapter 1 A. INTRODUCTION. Vitamin B-12 otherwise known as cyanocobalamin is a compound with synthetic elegance. Considering how it is composed of an aromatic macrocyclic corrin there are key features of this molecule that are observed either in its synthesis of in the biochemical reactions it plays a role in whether they be isomerization reactions or transfer reactions. In this paper the focus for the discussion will be on the history, chemical significance and total synthesis of vitamin B12. Even more so the paper will be concentrated one of the two variants of the vitamin B-12 synthesis, namely the ETH Zurich variant spearheaded by Albert Eschenmoser.Examining the structure as a whole it is observed that a large portion of the vitamin B12 is a corrin structure with a cobalt ion in the center of the macrocyclic part, and that same cobalt ion has cyanide ligands. -
The Gun4 Gene Is Essential for Cyanobacterial Porphyrin Metabolism
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector FEBS 28618 FEBS Letters 571 (2004) 119–123 The gun4 gene is essential for cyanobacterial porphyrin metabolism Annegret Wildea,*, Sandra Mikolajczyka, Ali Alawadyb, Heiko Loksteinb, Bernhard Grimmb aInstitut fu€r Biologie, Biochemie der Pflanzen, Humboldt-Universita€t zu Berlin, Chausseestr. 117, 10115 Berlin, Germany bInstitut fu€r Biologie, Pflanzenphysiologie, Humboldt-Universita€t zu Berlin, Philippstr. 13, 10115 Berlin, Germany Received 5 April 2004; revised 16 June 2004; accepted 17 June 2004 Available online 6 July 2004 Edited by Richard Cogdell norflurazon treatment and are characterized by deregulated Abstract Ycf53 is a hypothetical chloroplast open reading Gun4 frame with similarity to the Arabidopsis nuclear gene GUN4.In communication between plastids and nucleus [2]. carries plants, GUN4 is involved in tetrapyrrole biosynthesis. We a nuclear mutant gene, which encodes a putative regulatory demonstrate that one of the two Synechocystis sp. PCC 6803 protein that interacts with Mg chelatase and stimulates its ycf53 genes with similarity to GUN4 functions in chlorophyll activity [3]. Mg chelatase is a highly regulated tetrapyrrole (Chl) biosynthesis as well: cyanobacterial gun4 mutant cells biosynthesis enzyme which catalyzes insertion of Mg2þ into exhibit lower Chl contents, accumulate protoporphyrin IX and protoporphyrin IX (Proto) and thus, directs Proto into the show less activity not only of Mg chelatase but also of Fe chlorophyll (Chl) synthesizing pathway [4]. Mg chelatase is a chelatase. The possible role of Gun4 for the Mg as well as Fe protein complex consisting of three subunits, CHL I, CHL H porphyrin biosynthesis branches in Synechocystis sp. -
Itraq-Based Quantitative Proteomics Analysis Reveals the Mechanism Underlying the Weakening of Carbon Metabolism in Chlorotic Tea Leaves
Article iTRAQ-Based Quantitative Proteomics Analysis Reveals the Mechanism Underlying the Weakening of Carbon Metabolism in Chlorotic Tea Leaves Fang Dong 1,2, Yuanzhi Shi 1,2, Meiya Liu 1,2, Kai Fan 1,2, Qunfeng Zhang 1,2,* and Jianyun Ruan 1,2 1 Tea Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou 310008, China; [email protected] (F.D.); [email protected] (Y.S.); [email protected] (M.L.); [email protected] (K.F.); [email protected] (J.R.) 2 Key Laboratory for Plant Biology and Resource Application of Tea, the Ministry of Agriculture, Hangzhou 310008, China * Correspondence: [email protected]; Tel.: +86-571-8527-0665 Received: 7 November 2018; Accepted: 5 December 2018; Published: 7 December 2018 Abstract: To uncover mechanism of highly weakened carbon metabolism in chlorotic tea (Camellia sinensis) plants, iTRAQ (isobaric tags for relative and absolute quantification)-based proteomic analyses were employed to study the differences in protein expression profiles in chlorophyll-deficient and normal green leaves in the tea plant cultivar “Huangjinya”. A total of 2110 proteins were identified in “Huangjinya”, and 173 proteins showed differential accumulations between the chlorotic and normal green leaves. Of these, 19 proteins were correlated with RNA expression levels, based on integrated analyses of the transcriptome and proteome. Moreover, the results of our analysis of differentially expressed proteins suggested that primary carbon metabolism (i.e., carbohydrate synthesis and transport) was inhibited in chlorotic tea leaves. The differentially expressed genes and proteins combined with photosynthetic phenotypic data indicated that 4-coumarate-CoA ligase (4CL) showed a major effect on repressing flavonoid metabolism, and abnormal developmental chloroplast inhibited the accumulation of chlorophyll and flavonoids because few carbon skeletons were provided as a result of a weakened primary carbon metabolism. -
Post-Translational Coordination of Chlorophyll Biosynthesis And
ARTICLE https://doi.org/10.1038/s41467-020-14992-9 OPEN Post-translational coordination of chlorophyll biosynthesis and breakdown by BCMs maintains chlorophyll homeostasis during leaf development ✉ ✉ Peng Wang 1 , Andreas S. Richter 1,3, Julius R.W. Kleeberg 2, Stefan Geimer2 & Bernhard Grimm1 Chlorophyll is indispensable for life on Earth. Dynamic control of chlorophyll level, determined by the relative rates of chlorophyll anabolism and catabolism, ensures optimal photosynthesis 1234567890():,; and plant fitness. How plants post-translationally coordinate these two antagonistic pathways during their lifespan remains enigmatic. Here, we show that two Arabidopsis paralogs of BALANCE of CHLOROPHYLL METABOLISM (BCM) act as functionally conserved scaffold proteins to regulate the trade-off between chlorophyll synthesis and breakdown. During early leaf development, BCM1 interacts with GENOMES UNCOUPLED 4 to stimulate Mg-chelatase activity, thus optimizing chlorophyll synthesis. Meanwhile, BCM1’s interaction with Mg- dechelatase promotes degradation of the latter, thereby preventing chlorophyll degradation. At the onset of leaf senescence, BCM2 is up-regulated relative to BCM1, and plays a con- served role in attenuating chlorophyll degradation. These results support a model in which post-translational regulators promote chlorophyll homeostasis by adjusting the balance between chlorophyll biosynthesis and breakdown during leaf development. 1 Institute of Biology/Plant Physiology, Humboldt-Universität zu Berlin, Philippstraße 13, 10115 Berlin, -
Itraq-Based Proteome Profiling Revealed the Role of Phytochrome A
www.nature.com/scientificreports OPEN iTRAQ‑based proteome profling revealed the role of Phytochrome A in regulating primary metabolism in tomato seedling Sherinmol Thomas1, Rakesh Kumar2,3, Kapil Sharma2, Abhilash Barpanda1, Yellamaraju Sreelakshmi2, Rameshwar Sharma2 & Sanjeeva Srivastava1* In plants, during growth and development, photoreceptors monitor fuctuations in their environment and adjust their metabolism as a strategy of surveillance. Phytochromes (Phys) play an essential role in plant growth and development, from germination to fruit development. FR‑light (FR) insensitive mutant (fri) carries a recessive mutation in Phytochrome A and is characterized by the failure to de‑etiolate in continuous FR. Here we used iTRAQ‑based quantitative proteomics along with metabolomics to unravel the role of Phytochrome A in regulating central metabolism in tomato seedlings grown under FR. Our results indicate that Phytochrome A has a predominant role in FR‑mediated establishment of the mature seedling proteome. Further, we observed temporal regulation in the expression of several of the late response proteins associated with central metabolism. The proteomics investigations identifed a decreased abundance of enzymes involved in photosynthesis and carbon fxation in the mutant. Profound accumulation of storage proteins in the mutant ascertained the possible conversion of sugars into storage material instead of being used or the retention of an earlier profle associated with the mature embryo. The enhanced accumulation of organic sugars in the seedlings indicates the absence of photomorphogenesis in the mutant. Plant development is intimately bound to the external light environment. Light drives photosynthetic carbon fxa- tion and activates a set of signal-transducing photoreceptors that regulate plant growth and development. -
AOP 131: Aryl Hydrocarbon Receptor Activation Leading to Uroporphyria
Organisation for Economic Co-operation and Development DOCUMENT CODE For Official Use English - Or. English 1 January 1990 AOP 131: Aryl hydrocarbon receptor activation leading to uroporphyria Short Title: AHR activation-uroporphyria This document was approved by the Extended Advisory Group on Molecular Screening and Toxicogenomics in June 2018. The Working Group of the National Coordinators of the Test Guidelines Programme and the Working Party on Hazard Assessment are invited to review and endorse the AOP by 29 March 2019. Magdalini Sachana, Administrator, Hazard Assessment, [email protected], +(33- 1) 85 55 64 23 Nathalie Delrue, Administrator, Test Guidelines, [email protected], +(33-1) 45 24 98 44 This document, as well as any data and map included herein, are without prejudice to the status of or sovereignty over any territory, to the delimitation of international frontiers and boundaries and to the name of any territory, city or area. 2 │ Foreword This Adverse Outcome Pathway (AOP) on Aryl hydrocarbon receptor activation leading to uroporphyria, has been developed under the auspices of the OECD AOP Development Programme, overseen by the Extended Advisory Group on Molecular Screening and Toxicogenomics (EAGMST), which is an advisory group under the Working Group of the National Coordinators for the Test Guidelines Programme (WNT). The AOP has been reviewed internally by the EAGMST, externally by experts nominated by the WNT, and has been endorsed by the WNT and the Working Party on Hazard Assessment (WPHA) in xxxxx. Through endorsement of this AOP, the WNT and the WPHA express confidence in the scientific review process that the AOP has undergone and accept the recommendation of the EAGMST that the AOP be disseminated publicly. -
UTMB Testing Packet/Order Form
Galveston Porphyria Laboratory The University of Texas Medical Branch Galveston, Texas Instructions for Collecting, Processing and Shipping Samples for Porphyria Testing This packet contains the following: • Instructions for collecting, processing and shipping samples • Order form for testing • A primer on laboratory testing for porphyrias Updated 9 June 2021 Page 1 Instructions for Collecting, Processing and Shipping Samples I. Sample Collection and Processing GENERAL INSTRUCTIONS 1. Types of samples used for porphyria testing (For choice of tests, see the attached Primer): a. Urine – spot (random or single void) urine sample is recommended with no preservative. A first-void sample on arising in the morning is preferred. i. Creatinine is measured on all urine samples for “normalization” of the results. The amount of creatinine excreted every day is quite constant because it reflects muscle mass. Most adults excrete 1-2 grams of creatinine daily in urine. Expressing results per gram of creatinine corrects for variation in the hydration state of the patient over time. The sample should be light protected (e.g. by wrapping the container in aluminum foil) and immediately refrigerated or frozen. ii. A 24-hour collection is also suitable, but 5 gm of sodium carbonate (not sodium bicarbonate) should be added to the container before starting the collection, the container should be refrigerated and protected from light during the collection (e.g. by using a dark-colored plastic collection bottle). The total volume must be measured in a single container and only a portion (an “aliquot”) sent to the laboratory for testing. Detailed instructions on how to properly collect a 24-hour urine must be given verbally to the patient along with the container containing the preservative. -
Kinetics of Metal Chelatase from Rat Liver Mitochondria
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Volume 13, number 2 FEBS LETTERS February 1971 KINETICS OF METAL CHELATASE FROM RAT LIVER MITOCHONDRIA H. BUGANY, L. FLOHE and U. WESER* Physiologisch-Chemisches Institut der Universitit Tiibingen, Germany Received 11 December 1970 1. Introduction and protoporphyrin IX served as the cosubstrate. This permitted assay of the metal chelatase activity The name metal chelatase has been deliberately much more precisely since anaerobic precautions chosen for the enzyme ferrochelatase (protohaem could be omitted. The maximum deviation of this ferro-lyase, EC 4.99.1 .l.). This enzyme preferentially assay did not exceed 7%. The experimental data pre- catalyses the insertion of Fe’+ ions into porphyrins sented in this report strongly suggest a random bin- to form haems. However, Co*+ and Zn*+ are almost ding of either substrate - i.e. Co*+ or protoporphyrin as active as Fe*+. Many divalent cations including IX - to the metal chelatase. The respective K, values Mg”, Ca*+, Ni*‘, Cd*‘, Pb*+ and Hg*+ inhibits this proved to be independent of the concentration of enzyme process [l-4] . The rate of non-enzymic the cosubstrate. The numerical K, values were 8 MM incorporation of metal ions under the same experi- for Co*+ and 3.6 PM for protoporphyrin IX. mental conditions is practically zero. Metal chelatase has a wide distribution in a great number of aerobic cells. Its purification, however, is 2. Materials and methods difficult and this was attributable to its chemical nature. Metal chelatase appears to be a structure- Female albino rats (Sprague-Dawley) weighing bound lipoprotein although a second water soluble 150 ? 30 g were kept under normal laboratory con- enzyme has been detected in Rhodopseudomonas ditions and were used without further treatment. -
PROTOPORPHYRIN IX Free Erythrocyte and Zincprotoporphyrin in WHOLE BLOOD by FLUORIMETRY – FAST – CODE Z39110
PROTOPORPHYRIN IX free erythrocyte and ZincPROTOPORPHYRIN IN WHOLE BLOOD BY FLUORIMETRY – FAST – CODE Z39110 BIOCHEMISTRY The determination of ZincProtoporphyrin erythrocyte (ZPP-WB) has been used as an indicator of lead intoxication. The risk of exposure to lead in the population at large is different from that in occupational settings. In the latter, the main route of absorption is through respiratory inhalation. After absorption, lead is transported to the blood, where it is equally distributed in red blood cells and plasma; then it reaches diverse organs and tissues, and is deposited mainly in bone. Lead inhibits the biosynthesis of hemoglobin in red blood cells; by blocking ferrochelatase, it obstructs the binding of iron to Protoporphyrin IX, which in turn binds to zinc, forming ZincProtoporphyrin (ZPP). As a result, the concentration of ZPP in the red blood cell increases and that of hemoglobin decreases, leading to normocytic hypochromic anemia and high levels of serum iron. Protoporphyrin IX is an important precursor of biologically essential prosthetic groups such as heme, cytochrome C and chlorophylls. As a result, a number of organisms are able to synthesize this tetrapyrrole from basic precursors such as glycine and succinyl-CoA, or glutamate. Despite the wide range of organisms that synthesize Protoporphyrin IX, the process is largely preserved by bacteria to mammals, with some distinct exceptions in higher plants. Porphyrias are a group of hereditary disorders resulting from enzymatic defects in the biosynthetic pathway of heme. Depending on the specific enzyme involved, various porphyrins and their precursors accumulate in different types of samples. Patterns of porphyrin accumulation in erythrocytes and plasma and excretion of heme precursors in urine and faeces allow to detect and differentiate porphyrins. -
On Tuning the Fluorescence Emission of Porphyrin Free Bases Bonded to the Pore Walls of Organo-Modified Silica
Molecules 2014, 19, 2261-2285; doi:10.3390/molecules19022261 OPEN ACCESS molecules ISSN 1420-3049 www.mdpi.com/journal/molecules Article On Tuning the Fluorescence Emission of Porphyrin Free Bases Bonded to the Pore Walls of Organo-Modified Silica Rosa I. Y. Quiroz-Segoviano 1, Iris N. Serratos 1, Fernando Rojas-González 1, Salvador R. Tello-Solís 1, Rebeca Sosa-Fonseca 2, Obdulia Medina-Juárez 1, Carmina Menchaca-Campos 3 and Miguel A. García-Sánchez 1,* 1 Departamento de Química, Universidad Autónoma Metropolitana-Iztapalapa, Av. San Rafael Atlixco 186, Vicentina, D. F. 09340, Mexico 2 Departamento de Física, Universidad Autónoma Metropolitana-Iztapalapa, Av. San Rafael Atlixco 186, Vicentina, D. F. 09340, Mexico 3 Centro de Investigación en Ingeniería y Ciencias Aplicadas, UAEM, Av. Universidad 1001, Col. Chamilpa, C.P. 62209, Cuernavaca Mor., Mexico * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +52-55-5804-4677; Fax: +52-55-5804-4666. Received: 24 December 2013; in revised form: 29 January 2014 / Accepted: 7 February 2014 / Published: 21 February 2014 Abstract: A sol-gel methodology has been duly developed in order to perform a controlled covalent coupling of tetrapyrrole macrocycles (e.g., porphyrins, phthalocyanines, naphthalocyanines, chlorophyll, etc.) to the pores of metal oxide networks. The resulting absorption and emission spectra intensities in the UV-VIS-NIR range have been found to depend on the polarity existing inside the pores of the network; in turn, this polarization can be tuned through the attachment of organic substituents to the tetrapyrrrole macrocycles before bonding them to the pore network. -
1 INTRODUCTION Corroles Are Tetrapyrrolic Molecules, Maintaining
1 Chapter 1 INTRODUCTION Corroles are tetrapyrrolic molecules, maintaining the skeletal structure of corrin, with its three meso carbon positions and one direct pyrrole-pyrrole linkage, and possessing the aromaticity of porphyrins (see figure 1.1). First reported by Johnson and Kay in 1965[1], corroles were the end product of a many step synthetic scheme, finally being formed by the photocyclization of a,c-biladienes. While this last step was simple, with 20-60% yields, the route to a,c-biladienes was far from easy. Indeed, the overall reaction from readily available starting materials to corrole was a multi-step synthesis, with poor yields in many of the reactions. Thus, while corroles have been known for more than 40 years, research in the field was slow to progress. It wasn’t until the discovery of new synthetic methods for corroles developed in 1999 by different groups working independently that research in this area really started to expand[2]. This is not to say, however, that the field of corrole research was non-existent prior to the development of the new methodologies. While it was slow growing after the initial publication, it was far from stagnant, and many of the interesting properties of corroles were investigated by different groups. Among these properties is their ability to stabilize unusually high formal oxidation states of metal ions, such as iron(IV), cobalt(IV), and cobalt(V)[3, 4]. In fact, one particular corrole available through a method developed by Zeev 2 N N H N N H H N N N N a b N N H H H N N c Figure 1.1.