Color Additive Monographs
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I Topic - Algal Pigments and Algal Classification(ALGAE) Prepared by –Prof.(Dr.)Jainendra Kumar Coordinated By: Prof.(Dr) Shyam Nandan Prasad
Course- M.Sc. Botany Part -I Paper -I Topic - Algal Pigments and algal Classification(ALGAE) Prepared by –Prof.(Dr.)Jainendra Kumar Coordinated by: Prof.(Dr) Shyam Nandan Prasad The algae were broadly divided by F.F.Fritsch (1935) into eleven classes according to their colour - 1. Chlorophyceae or green algae 2. Xanthophyceae or yellow-green algae 3. Chrysophyceae 4. Bacillariophyceae or golden-brown algae 5. Cryptophyceae 6. Dinophyceae 7. Chloromonadineae 8. Eugleninae 9. Phaeophyceae or brown algae 10. Rhodophyceae or red algae, and 11. Myxophyceae or blue-green algae Normally, classification of algae is based on - 1. Nuclear Organization 2. Nature of Cell Wall Components 3. Pigmentation and Photosynthetic Apparatus The pigment is one of the most important criteria used in differentiation of classes in algae. The pigments in algae can be chlorophylls, carotenoids and biloproteins. These pigments are present in sac like structures called thylakoids. The thylakoids are arranged in stacks in the granum of the chloroplasts. Different groups of algae have different types of pigments and organization of thylakoids in chloroplast. The chlorophylls in algae are chlorophyll a, b, c, d and e types. Chlorophyll a is present in all classes of algae. Chlorophyll b is primary pigment of Chlorophyceae and Euglenineae. Chlorophyll c is found in Phaeophyceae and Cryptophyceae. Chlorophyll d is found in Rhodophyceae. Chlorophyll e is confined to Tribonema of Xanthophyceae. Pigments are chemical compounds which reflect only certain wavelengths of visible light. This makes them appear colourful. More important than their reflection of light is the ability of pigments to absorb certain wavelengths. Since each pigment reacts with only a narrow range of the spectrum, it is important for algae to produce pigments of different colours to capture more of the sun's energy. -
Quantify Chlorophyll a and Chlorophyll B with a Custom Method
APPLICATION NOTE NanoDrop One/OneC No. T141 Quantify chlorophyll a and chlorophyll b with a custom method Using the NanoDrop One Spectrophotometer Abstract Scientists can accurately quantify chlorophyll a and chlorophyll b on the Thermo Scientific™ NanoDrop™ One/OneC Microvolume UV-Vis Spectrophotometer using a user-defined custom method. Introduction Chlorophyll a is the principal pigment that converts light energy to chemical energy, and chlorophyll b is the accessory photosynthetic pigment that transfers light it absorbs to chlorophyll a. Chlorophyll a is found in all plants, green algae, and cyanobacteria, and chlorophyll b is found in plants and green algae. Chlorophyll quantitation is valuable in a vast array of disciplines including but not limited to plant biology, environmental science, ecotoxicology, disease prevention, and medical drug discovery. Spectrophotometry is a common method used to measure the absorbance of light by the chlorophyll molecules. The NanoDrop One/OneC UV-Vis Spectrophotometer can be used to measure the absorbance of chlorophyll. Chlorophyll a and chlorophyll b absorb light at slightly different wavelengths. peaks (Figure 1). With this information, a user-defined Chlorophyll a absorbs light at 433 nm and 666 nm custom method including user-defined formulas can be and chlorophyll b absorbs light at 462 nm and 650 created to measure the absorbance and determine the nm. The NanoDrop One/OneC UV-Vis application can concentration of chlorophyll. be used to observe the spectrum of each chlorophyll a and chlorophyll b and identify major absorbance chlorophyll a Figure 2. Chlorophyll Content custom method created to quantify chlorophyll a and chlorophyll b samples suspended in 100% DMSO. -
Catabolism of Tetrapyrroles As the Final Product of Heme Catabolism (Cf Scheme 1)
CHEMIE IN FREIBURG/CHIMIE A FRIBOURG 352 CHIMIA 48 (199~) Nr. 9 (Scl'lcmhcr) ns itu Chimia 48 (/994) 352-36/ heme (1), at the a-methene bridge (C(5)) €> Neue Sclnveizerische Chemische Gesellschaft producing CO and an unstable Felli com- /SSN 0009-4293 plex. The latter loses the metal ion to yield the green pigment protobiliverdin IXa (usually abbreviated to biliverdin (2)), which is excreted by birds and amphibia, Catabolism of Tetrapyrroles as the final product of heme catabolism (cf Scheme 1). The iron is recovered in the protein called ferritin and can be reutilized Albert Gossauer* for the biosynthesis of new heme mole- cules. As biliverdin (2) has been recog- nized to be a precursor in the biosynthesis of phycobilins [9], a similar pathway is Abstract. The enzymatic degradation of naturally occurring tetrapyrrolic pigments probably followed for the biosynthesis of (heme, chlorophylls, and vitamin B 12) is shortly reviewed. this class oflight-harvesting chromophores 1. Introduction pounds known so far are synthesized, have Scheme I. Catabolism (!{ Heme ill Mammals been already elucidated, it may be antici- In contrast to the enormous amount of pated that the study of catabolic processes work accomplished by chemists in the will attract the interest of more chemists elucidation of biosynthetic pathways of and biochemists in the near future. secondary metabolites (terpenes, steroids, alkaloids, among others), only a few at- tempts have been made until now to un- 2. Heme Catabolism derstand the mechanisms oftheirdegrada- tion in living organisms. A possible rea- It has been known for over half a cen- son for this fact is the irrational association tury that heme, the oxygen-carrier mole- of degradation (catabolism: greek Kara= cule associated with the blood pigment down) with decay and, thus, with unattrac- hemoglobin, is converted in animal cells tive dirty colors and unpleasant odors. -
The Function of PROTOPORPHYRINOGEN IX OXIDASE in Chlorophyll Biosynthesis Requires Oxidised Plastoquinone in Chlamydomonas Reinh
The function of PROTOPORPHYRINOGEN IX OXIDASE in chlorophyll biosynthesis requires oxidised plastoquinone in Chlamydomonas reinhardtii Pawel Brzezowski, Brigitte Ksas, Michel Havaux, Bernhard Grimm, Marie Chazaux, Gilles Peltier, Xenie Johnson, Jean Alric To cite this version: Pawel Brzezowski, Brigitte Ksas, Michel Havaux, Bernhard Grimm, Marie Chazaux, et al.. The function of PROTOPORPHYRINOGEN IX OXIDASE in chlorophyll biosynthesis requires oxidised plastoquinone in Chlamydomonas reinhardtii. Communications Biology, Nature Publishing Group, 2019, 2, pp.159. 10.1038/s42003-019-0395-5. cea-02149191 HAL Id: cea-02149191 https://hal-cea.archives-ouvertes.fr/cea-02149191 Submitted on 6 Jun 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License ARTICLE https://doi.org/10.1038/s42003-019-0395-5 OPEN The function of PROTOPORPHYRINOGEN IX OXIDASE in chlorophyll biosynthesis requires oxidised plastoquinone in Chlamydomonas reinhardtii 1234567890():,; Pawel Brzezowski 1,2, Brigitte Ksas3, Michel Havaux3, Bernhard Grimm2, Marie Chazaux1, Gilles Peltier1, Xenie Johnson 1 & Jean Alric 1 In the last common enzymatic step of tetrapyrrole biosynthesis, prior to the branching point leading to the biosynthesis of heme and chlorophyll, protoporphyrinogen IX (Protogen) is oxidised to protoporphyrin IX (Proto) by protoporphyrinogen IX oxidase (PPX). -
Hemin and Chlorophyll— the Two Most Important Pigments for Life on Earth1
THE OHIO JOURNAL OF SCIENCE VOL. LVI JULY, 1956 No. 4 HEMIN AND CHLOROPHYLL— THE TWO MOST IMPORTANT PIGMENTS FOR LIFE ON EARTH1 PAUL ROTHEMUND The Ohio State University, Columbus, 10, and Muskingum College, New Concord, Ohio Two chemical processes are the prerequisites for all life on earth: the absorption of some of the energy from the sun in the green plants and its transformation into carbon compounds on one hand, and the use of the chemical energy of these compounds by animals in controlled decomposition reactions on the other. From the chemist's point of view the green leaf is a veritable chemical labora- tory: carbon dioxide from the air, and water and inorganic salts from the soil are the raw material, the visible portion of the sun radiation furnishes the energy, and the numerous complex constituents of the plant represent the manufactured products. Some of the substances synthesized are structural matter, like cellulose in the wood, or cork in the bark, others are food reserves, as starch in the grains of corn or wheat, or in potatoes. Of the many other materials produced in the green plant only a few may be enumerated here, sugars, fats, oils and waxes, proteins and nucleic acids, fibers like cotton or hemp, vitamins, hormones, indigo and other dyes, latex for producing rubber, alkaloids like the nicotin in tobacco leaves, valuable medicinally used compounds, such as quinine, cocaine, and morphine, and—most important—the green pigment chlorophyll. "Photo- synthesis", or the "assimilation of carbon dioxide" is the biochemical process, in which simply constructed and relatively inert inorganic compounds are built up into the highly complex, reactive and sensitive organic compounds, which characterize living matter. -
And Formation
J Med Genet: first published as 10.1136/jmg.17.1.1 on 1 February 1980. Downloaded from Review article Journal of Medical Genetics, 1980, 17, 1-14 Haems and chlorophylls: comparison of function and formation G A F HENDRY AND 0 T G JONES From the Department ofBiochemistry, The Medical School, University ofBristol, Bristol BS8 ITD In 1844 Verdeill reported that acid treatment of at the same time by McMunn3 of cytochromes, chlorophyll or haem yielded apparently similar red another group of haem proteins. compounds; he even postulated that chlorophylls It was the demonstration by Nencki and co- would contain iron. Hoppe-Seyler2 confirmed the workers 45 that the degradation of both chlorophylls apparent similarity of acid derivatives of haems and and haems yielded monopyrroles that led them, in chlorophylls from their light absorption charac- true neo-Darwinian fashion, to postulate a common teristics, a point rather overshadowing the discovery origin for animals and plants. 0 0-'I CH2 II copyright. CH CH3 COOH CIH2 CH2 C-O CH2 http://jmg.bmj.com/ NH2 ( CH3' 'CH3 ® 5- Aminolaevulinic acid a CH2 2 1 12 2 CH2 )H COOH CD FIG 1 Structures ofprotohaem and Protoporphyrin IX chlorophyll a and two of their precursors, acid and 5-aminolaevulinic on September 30, 2021 by guest. Protected protoporphyrin IX (with substituent numbering positions). CH2 CH CH.--,j CH2 CH2 COOCH3 Protohoem (haem- b) CooC20H39 Chlorophyll a 1 J Med Genet: first published as 10.1136/jmg.17.1.1 on 1 February 1980. Downloaded from 2 G A F Hendry and 0 T G Jones Following the work ofWillstatter6 and Fischer and particularly those of avian egg shells, have no Stern,7 the structure of most natural and many central complexed metal. -
Chlorophyll Breakdown—Regulation, Biochemistry and Phyllobilins As Its Products
Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2019 Chlorophyll breakdown—Regulation, biochemistry and phyllobilins as its products Hörtensteiner, Stefan ; Hauenstein, Mareike ; Kräutler, Bernhard DOI: https://doi.org/10.1016/bs.abr.2019.03.004 Posted at the Zurich Open Repository and Archive, University of Zurich ZORA URL: https://doi.org/10.5167/uzh-183049 Book Section Accepted Version The following work is licensed under a Creative Commons: Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0) License. Originally published at: Hörtensteiner, Stefan; Hauenstein, Mareike; Kräutler, Bernhard (2019). Chlorophyll breakdown—Regulation, biochemistry and phyllobilins as its products. In: Grimm, Bernhard. Metabolism, Structure and Function of Plant Tetrapyrroles: Introduction, Microbial and Eukaryotic Chlorophyll Synthesis and Catabolism. London: Elsevier, 213-271. DOI: https://doi.org/10.1016/bs.abr.2019.03.004 1 Chlorophyll Breakdown - Regulation, Biochemistry and Phyllobilins as its Products Stefan Hörtensteinera, Mareike Hauensteina & Bernhard Kräutlerb a Institute of Plant and Microbial Biology, University of Zurich, Zollikerstrasse 107 CH-8008 Zurich, Switzerland [email protected] b Institute of Organic Chemistry & Center for Molecular Biosciences (CMBI) Innrain 80/82, University of Innsbruck, A-6020 Innsbruck, Austria [email protected] I. Introduction II. Structures of bilin-type Chl catabolites from higher plants and their nomenclature A. Colorless fluorescent phyllobilins from higher plants and their structures 1. Fluorescent (formyloxobilin-type) Chl catabolites 2. Dioxobilin-type fluorescent Chl catabolites B. Colorless nonfluorescent phyllobilins from higher plants and their structures 1. Nonfluorescent (formyloxobilin-type) Chl catabolites 2. -
Quantification of Chlorophyll and Carotene Pigments Content
Article Quantification of Chlorophyll and Carotene Pigments Content in Mountain Melick (Melica nutans L.) in Relation to Edaphic Variables Waldemar Zielewicz 1 , Barbara Wróbel 2 and Gniewko Niedbała 3,* 1 Department of Grassland and Natural Landscape Sciences, Faculty of Agronomy, Horticulture and Bioengineering, Pozna´nUniversity of Life Sciences, Dojazd 11, 60-632 Pozna´n,Poland; [email protected] 2 Department of Grassland Farming, Institute of Technology and Life Sciences, Falenty, Aleja Hrabska 3, 05-090 Raszyn, Poland; [email protected] 3 Department of Biosystems Engineering, Faculty of Environmental Engineering and Mechanical Engineering, Pozna´nUniversity of Life Sciences, Wojska Polskiego 50, 60-627 Pozna´n,Poland * Correspondence: [email protected] Received: 19 October 2020; Accepted: 11 November 2020; Published: 13 November 2020 Abstract: The aim of the study was to identify and compare the content of chlorophyll and carotene pigments in mountain melick plants (Melica nutans L.) growing in two forest habitats in the Zielonka Forest Landscape Park in the Greater Poland region, which differed in soil properties and moisture. Leaf blades from the middle level of Melica nutans generative shoots were used as analytical material to measure the content of chlorophyll a, chlorophyll b, β-carotene and total carotenoids. The average ( SD) content of chlorophyll a in the Melica nutans plants growing in the less fertile site (Location I) ± amounted to 6.67 0.99 mg g 1 DM. The average content of chlorophyll b in the same plants was ± · − 2.44 0.39 mg g 1 DM. The Melica nutans plants growing in the more fertile site (Location II) had ± · − a higher content of chlorophyll a, i.e., 7.76 0.96 mg g 1 DM, and lower content of chlorophyll b, ± · − i.e., 2.36 0.26 mg g 1 DM. -
Tetrapyrrole Profiling in Arabidopsis Seedlings Reveals That Retrograde Plastid Nuclear Signaling Is Not Due to Mg-Protoporphyrin IX Accumulation
Tetrapyrrole profiling in Arabidopsis seedlings reveals that retrograde plastid nuclear signaling is not due to Mg-protoporphyrin IX accumulation Michael Moulin*, Alex C. McCormac†‡, Matthew J. Terry†, and Alison G. Smith*§ *Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge CB2 3EA, United Kingdom; and †School of Biological Sciences, University of Southampton, Boldrewood Campus, Southampton SO16 7PX, United Kingdom Edited by Diter von Wettstein, Washington State University, Pullman, WA, and approved August 8, 2008 (received for review April 2, 2008) Chloroplast biogenesis involves careful coordination of both plas- GTS HEMA GSA tid and nuclear gene expression, which is achieved in part by Glu ALA ALAD retrograde signaling from the chloroplast to the nucleus. This can FLU be demonstrated by the fact that the herbicide, Norflurazon (NF), PBGD which causes bleaching of chloroplasts, prevents the light induc- UROS UPM tion of photosynthesis-related genes in the nucleus. It has been UROD SIRB proposed that the tetrapyrrole pathway intermediate Mg-proto- CPO porphyrin IX acts as the signaling molecule in this pathway and Siroheme PPO accumulates in the chloroplasts and cytosol of the cell after NF treatment. Here we present data that demonstrate that this model Proto IX CHLD FC CHLH GUN4 is too simplistic. We have developed a sensitive liquid chromatog- CHLI HY2 HO raphy-mass spectrometry (LC/MS) method to measure tetrapyrrole PΦB Heme Mg-proto intermediates and have shown that no Mg-protoporphyrin IX, nor CHLM indeed any other chlorophyll-biosynthesis intermediate, can be Mg-proto ME detected in NF-treated plants under conditions in which nuclear CRD1 gene expression is repressed. -
Studies on Phytoplankton Pigments: Chlorophyll, Total Carotenoids and Degradation Products in Vietnamese Waters
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Aquatic Commons Proceedings of the SEAFDEC Seminar on Fishery Resources in the South China Sea, Area IV : Vietnamese Waters Studies on Phytoplankton Pigments: Chlorophyll, Total Carotenoids and Degradation Products in Vietnamese Waters Nguyen Tac An, Hoang Trung Du Institute of Oceanography, Vietnam, O1CauDa – Nhatrang - Vietnam ABSTRACT Distribution of phytoplankton pigments was investigated in the relation to Chlorophyll a (Chl-a) and light intensity in Vietnamese waters located at longitude 102E - 112W, latitute 23N - 7N. Over 200 samples collected at 58 stations were analyzed for pigments(Chlorophyll a, b ,c and carotenoids) and degradation products (Phaeophytill). Chlorophyll a was measured by fluorescence. Results show that average values in the seawater were 0.18 ± 0.04 mg.m-3for Chl-a; 0.05 ± 0.01 mg.m-3 for Chl-b; 0.062 mg.m-3 for Phaeophytill. Higher value of Chl-a occurred at the thermocline but maxima were found at 75 or 50m depths. Average value of Carotenoids concentration was very low about 0.052 ± 0.12 mg.m-3. The report used a model for the relationship between Chlorophyll a content and light intensity to estimate the primary production. Average value of primary production was about 9.04 mgC.m3.day-1 at the surface and 2.63 mgC.m3.day-1 at the bottom. The relationship between Chlorophyll and some environmental parameters such as temperature, salinity was examined. The effects of thermocline and halocline to the primary production were analyzed. Introduction Study on the content distribution of Chlorophylls a,b,c and Carotenoids of phytoplankton in the seawater is very necessary. -
Phycoerythrin Pigment Concentration
Algorithm Theoretical Basis Document MODIS Phycoerythrin Pigment Concentration (April 1999) Frank E. Hoge Building N-159, Room E200 National Aeronautics and Space Administration Goddard Space Flight Center Wallops Flight Facility Wallops Island, VA 23337 TELEPHONE: (757)-824-1567 E-MAIL: [email protected] FAX: (757) 804-1036 April 1, 1999 TABLE OF CONTENTS ABSTRACT .............................................................. i 1.0 Introduction ......................................................... 1 1.1. Identification of the Algorithm ....................................... 1 1.2. Overview of the algorithm .......................................... 1 1.3. Scope .......................................................... 2 11.4. List of Applicable Documents ........................................ 2 2.0 Overview and Background Information .................................... 3 2.1. Experimental Objective ............................................ 4 2.2. Historical Perspective .............................................. 4 2.3. Instrument Characteristics ........................................... 5 3.0 Algorithm Description ................................................. 6 3.1 Theoretical Description ............................................. 6 3.1.1 Physics of the Algorithm ................................... 7 3.1.1.1 Band Selection for Phycoerythrin Retrieval ............... 7 3.1.2 Mathematical Description of the Phycoerythrin Algorithm .......... 8 3.1.2.1 PUB, PEB(+), PEB(-) Phycoerythrin Algorithm ........... -
Scientific Opinion on Re-Evaluation of Chlorophyllins (E 140(Ii)) As Food Additives1
EFSA Journal 2015;13(5):4085 SCIENTIFIC OPINION Scientific Opinion on re-evaluation of chlorophyllins (E 140(ii)) as food additives1 EFSA Panel on Food Additives and Nutrient Sources added to Food (ANS)2,3 European Food Safety Authority (EFSA), Parma, Italy ABSTRACT Chlorophyllins (E 140(i)) are obtained by saponification of a solvent extract from sources, such as grass, lucerne, and nettle, that could not be regarded as edible plant material or food for humans. Chlorophyllins represent 90 % of the colouring matter in the food additive E 140(ii); the remaining part consists of other pigments, such as carotenoids, together with oils, fats and waxes derived from the source material. The Panel noted that the material used in many studies, identified as “chlorophyllins”, was quite often, if not always, a copper complex of chlorophyllins (E 141(ii)). There are no data regarding the absorption, distribution, metabolism and excretion (ADME) and toxicity of chlorophyllins (E 140(ii)). Considering the available data on chlorophylls (E 140(i)), the Panel concluded that chlorophyllins are not metabolites of chlorophylls in humans and owing to their differences in physico-chemical properties, it was not possible to support read-across for toxicity data between these two compounds. The Panel considered that it is necessary to carefully review the definition and identity of E 140(ii) in order to adequately characterise the food additive E 140(ii)) as used in the market. This will also allow proper assessment of its safety when relevant studies of the compound to which consumers are actually exposed become available. Considering the absence of relevant ADME and toxicity data, and because chlorophyllins (E 140(ii)) are neither natural constituents of the regular diet nor metabolites of chlorophylls in humans, the Panel concluded that it was not possible to assess the safety of chlorophyllins (E 140(ii)) as food additives.