Antiviral Product Development — Conducting and Submitting Virology Studies to the Agency
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Direct Agroinoculation of Maize Seedlings by Injection with Recombinant Foxtail Mosaic Virus and Sugarcane Mosaic Virus Infectious Clones
Direct Agroinoculation of Maize Seedlings by Injection with Recombinant Foxtail Mosaic Virus and Sugarcane Mosaic Virus Infectious Clones Bliss M. Beernink*,1, Katerina L. Holan*,1, Ryan R. Lappe1, Steven A. Whitham1 1 Department of Plant Pathology and Microbiology, Iowa State University * These authors contributed equally Corresponding Author Abstract Steven A. Whitham [email protected] Agrobacterium-based inoculation approaches are widely used for introducing viral vectors into plant tissues. This study details a protocol for the injection of maize Citation seedlings near meristematic tissue with Agrobacterium carrying a viral vector. Beernink, B.M., Holan, K.L., Lappe, R.R., Recombinant foxtail mosaic virus (FoMV) clones engineered for gene silencing and Whitham, S.A. Direct Agroinoculation of Maize Seedlings by Injection with gene expression were used to optimize this method, and its use was expanded Recombinant Foxtail Mosaic Virus and to include a recombinant sugarcane mosaic virus (SCMV) engineered for gene Sugarcane Mosaic Virus Infectious Clones. J. Vis. Exp. (168), e62277, expression. Gene fragments or coding sequences of interest are inserted into a doi:10.3791/62277 (2021). modified, infectious viral genome that has been cloned into the binary T-DNA plasmid vector pCAMBIA1380. The resulting plasmid constructs are transformed into Date Published Agrobacterium tumefaciens strain GV3101. Maize seedlings as young as 4 days February 27, 2021 old can be injected near the coleoptilar node with bacteria resuspended in MgSO4 DOI -
Chapter 12 Antimicrobial Therapy Antibiotics
Chapter 12 Antimicrobial Therapy Topics: • Ideal drug - Antimicrobial Therapy - Selective Toxicity • Terminology - Survey of Antimicrobial Drug • Antibiotics - Microbial Drug Resistance - Drug and Host Interaction An ideal antimicrobic: Chemotherapy is the use of any chemical - soluble in body fluids, agent in the treatment of disease. - selectively toxic , - nonallergenic, A chemotherapeutic agent or drug is any - reasonable half life (maintained at a chemical agent used in medical practice. constant therapeutic concentration) An antibiotic agent is usually considered to - unlikely to elicit resistance, be a chemical substance made by a - has a long shelf life, microorganism that can inhibit the growth or - reasonably priced. kill microorganisms. There is no ideal antimicrobic An antimicrobic or antimicrobial agent is Selective Toxicity - Drugs that specifically target a chemical substance similar to an microbial processes, and not the human host’s. antibiotic, but may be synthetic. Antibiotics Spectrum of antibiotics and targets • Naturally occurring antimicrobials – Metabolic products of bacteria and fungi – Reduce competition for nutrients and space • Bacteria – Streptomyces, Bacillus, • Molds – Penicillium, Cephalosporium * * 1 The mechanism of action for different 5 General Mechanisms of Action for antimicrobial drug targets in bacterial cells Antibiotics - Inhibition of Cell Wall Synthesis - Disruption of Cell Membrane Function - Inhibition of Protein Synthesis - Inhibition of Nucleic Acid Synthesis - Anti-metabolic activity Antibiotics -
Folic Acid Antagonists: Antimicrobial and Immunomodulating Mechanisms and Applications
International Journal of Molecular Sciences Review Folic Acid Antagonists: Antimicrobial and Immunomodulating Mechanisms and Applications Daniel Fernández-Villa 1, Maria Rosa Aguilar 1,2 and Luis Rojo 1,2,* 1 Instituto de Ciencia y Tecnología de Polímeros, Consejo Superior de Investigaciones Científicas, CSIC, 28006 Madrid, Spain; [email protected] (D.F.-V.); [email protected] (M.R.A.) 2 Consorcio Centro de Investigación Biomédica en Red de Bioingeniería, Biomateriales y Nanomedicina, 28029 Madrid, Spain * Correspondence: [email protected]; Tel.: +34-915-622-900 Received: 18 September 2019; Accepted: 7 October 2019; Published: 9 October 2019 Abstract: Bacterial, protozoan and other microbial infections share an accelerated metabolic rate. In order to ensure a proper functioning of cell replication and proteins and nucleic acids synthesis processes, folate metabolism rate is also increased in these cases. For this reason, folic acid antagonists have been used since their discovery to treat different kinds of microbial infections, taking advantage of this metabolic difference when compared with human cells. However, resistances to these compounds have emerged since then and only combined therapies are currently used in clinic. In addition, some of these compounds have been found to have an immunomodulatory behavior that allows clinicians using them as anti-inflammatory or immunosuppressive drugs. Therefore, the aim of this review is to provide an updated state-of-the-art on the use of antifolates as antibacterial and immunomodulating agents in the clinical setting, as well as to present their action mechanisms and currently investigated biomedical applications. Keywords: folic acid antagonists; antifolates; antibiotics; antibacterials; immunomodulation; sulfonamides; antimalarial 1. -
Unexpected Induction of Resistant Pseudomonas Aeruginosa Biofilm to fluoroquinolones by Diltiazem: a New Perspective of Microbiological Drug—Drug Interactionଝ
Journal of Infection and Public Health (2008) 1, 105—112 View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Unexpected induction of resistant Pseudomonas aeruginosa biofilm to fluoroquinolones by diltiazem: A new perspective of microbiological drug—drug interactionଝ Walid F. ElKhatib, Virginia L. Haynes, Ayman M. Noreddin ∗ University of Minnesota, Duluth, College of Pharmacy, Pharmacy Practice and Pharmaceutical Sciences, 1110 Kirby Dr. Life Sciences 232, Duluth, MN 55812, USA Received 15 August 2008; received in revised form 21 October 2008; accepted 22 October 2008 KEYWORDS Summary The increase of multi-drug resistant Pseudomonas aeruginosa infec- Diltiazem; tions is a worldwide dilemma. At the heart of the problem is the inability to treat Pseudomonas established P. aeruginosa biofilms with standard antibiotic therapy, including flu- aeruginosa; oroquinolones. We address a previously unstudied question as to the effect of a Biofilm; commonly prescribed calcium channel blocker (CCB) diltiazem on the biofilm growth. Resistance; Real-time monitoring of the overall growth and killing of P.aeruginosa biofilm during fluoroquinolones therapy in the presence and absence of diltiazem was performed. Fluoroquinolone In this study, we demonstrate that for P. aeruginosa biofilms, resistance to the first- line fluoroquinolones may be induced by the commonly prescribed calcium channel blocker diltiazem. Published by Elsevier Limited on behalf of King Saud Bin Abdulaziz University for Health Sciences. All rights reserved. Introduction approved for the treatment of angina, hyper- tension and cardiac arrhythmia [1]. It acts as Diltiazem is a class III calcium channel blocker a calcium antagonist that controls calcium ion (CCB) belonging to benzothiazepines and has been influx in cardiac and vascular smooth muscle cells through slow voltage-gated L-type channels in the ଝ This manuscript was presented in part at the Design of Med- cell membrane. -
Antimicrobial Chemotherapy and Sustainable Development: the Past, the Current Trend, and the Future
African Journal of Biomedical Research, Vol. 11 (2008); 235 - 250 ISSN 1119 – 5096 © Ibadan Biomedical Communications Group Review Article Antimicrobial chemotherapy and Sustainable Development: The past, The Current Trend, and the future *1 2 3 3 Okonko I.O, Fajobi E.A, Ogunnusi T.A, Ogunjobi A.A. and 3Obiogbolu C.H. Full-text available at http://www.ajbrui.com 1Department of Virology, Faculty of Basic Medical Sciences, College of Medicine, http://www.bioline.br/md http://www.ajol.com University of Ibadan, University College Hospital (UCH), Ibadan, Nigeria 2 Department of Basic Sciences, Federal College of Wildlife Management, New Bussa, Niger State, Nigeria 4Microbiology Unit, Department of Botany and Microbiology, University of Ibadan, Ibadan ABSTRACT Antimicrobial chemotherapy is a highly valued medical science which has shaped modern humanity in a phenomenal fashion. Within the past half century, a wide variety of antimicrobial substances have been discovered, designed and synthesized; literally hundreds of drugs have been successfully used in some fashion over the years. Today, the world wide anti-infective market exceeds $20 billion dollars annually and overall antimicrobial agents comprise the bulk of this trade. A number of general classes of antimicrobial drugs have emerged as Received: mainstays in modern infectious disease chemotherapy. Regardless of a better August 2007 understanding of infectious disease pathogenesis and the importance of sanitation, most individuals will become infected with a microbial pathogen many times, Accepted (Revised): throughout their lives and in developed countries, anti-infective chemotherapy July 2008 will be periodically administered. Antibacterial amount for the majority of anti- infective agents in comparison to antifungals, antivirals and antiparasitic agents. -
Recombinant and Chimeric Viruses
Recombinant and chimeric viruses: Evaluation of risks associated with changes in tropism Ben P.H. Peeters Animal Sciences Group, Wageningen University and Research Centre, Division of Infectious Diseases, P.O. Box 65, 8200 AB Lelystad, The Netherlands. May 2005 This report represents the personal opinion of the author. The interpretation of the data presented in this report is the sole responsibility of the author and does not necessarily represent the opinion of COGEM or the Animal Sciences Group. Dit rapport is op persoonlijke titel door de auteur samengesteld. De interpretatie van de gepresenteerde gegevens komt geheel voor rekening van de auteur en representeert niet de mening van de COGEM, noch die van de Animal Sciences Group. Advisory Committee Prof. dr. R.C. Hoeben (Chairman) Leiden University Medical Centre Dr. D. van Zaane Wageningen University and Research Centre Dr. C. van Maanen Animal Health Service Drs. D. Louz Bureau Genetically Modified Organisms Ing. A.M.P van Beurden Commission on Genetic Modification Recombinant and chimeric viruses 2 INHOUDSOPGAVE RECOMBINANT AND CHIMERIC VIRUSES: EVALUATION OF RISKS ASSOCIATED WITH CHANGES IN TROPISM Executive summary............................................................................................................................... 5 Introduction............................................................................................................................................ 7 1. Genetic modification of viruses .................................................................................................9 -
Development of a Point-Of-Care Assay for HIV-1 Viral Load Using Higher Refractive Index Antibody-Coated Microbeads
sensors Article Development of a Point-of-Care Assay for HIV-1 Viral Load Using Higher Refractive Index Antibody-Coated Microbeads Mazhar Sher 1,2, Benjamin Coleman 3, Massimo Caputi 4 and Waseem Asghar 1,2,5,* 1 Asghar-Lab, Micro and Nanotechnology in Medicine, College of Engineering and Computer Science, Boca Raton, FL 33431, USA; [email protected] 2 Department of Computer & Electrical Engineering and Computer Science, Florida Atlantic University, Boca Raton, FL 33431, USA 3 Department of Electrical and Computer Engineering, Rice University, 6100 Main Street, Houston, TX 77005, USA; [email protected] 4 Charles E. Schmidt College of Medicine, Florida Atlantic University, Boca Raton, FL 33431, USA; [email protected] 5 Department of Biological Sciences (Courtesy Appointment), Florida Atlantic University, Boca Raton, FL 33431, USA * Correspondence: [email protected] Abstract: The detection of viruses using imaging techniques is challenging because of the weak scattering of light generated by the targets of sizes in the nanometer range. The system we have developed overcomes the light scattering problems by utilizing antibody-coated microbeads of higher index of refraction that can specifically bind with viruses and increase the acceptance angle. Using the new technology, we have developed a portable, cost-effective, and field-deployable platform for the rapid quantification of HIV-1 viral load for point-of-care (POC) settings. The system combines microfluidics with a wide field of view lensless imaging technology. Highly specific antibodies are Citation: Sher, M.; Coleman, B.; functionalized to a glass slide inside a microchip to capture HIV-1 virions. The captured virions Caputi, M.; Asghar, W. -
Real-Time Quantitative PCR for the Design of Lentiviral Vector Analytical Assays
Gene Therapy (2005) 12, S36–S50 & 2005 Nature Publishing Group All rights reserved 0969-7128/05 $30.00 www.nature.com/gt CONFERENCE PAPER Real-time quantitative PCR for the design of lentiviral vector analytical assays C Delenda1 and C Gaillard2 1Genethon, CNRS UMR 8115, 1bis rue de l’Internationale, Evry Cedex, France; and 2GenoSafe, 1 rue Pierre Fontaine, Evry Cedex, France From the recent and emerging concerns for approving context, have been included in the effort to dress an lentiviral vector-mediated gene transfer in human clinical exhaustive list. Also, great variations have been observed applications, several analytical methods have been applied from interlaboratory results, we have tempted to compare in preclinical models to address the lentiviral vector load between them the different analytical methods that have in batches, cells or tissues. This review points out the oldest been used to consider (i) the titration of lentiviral vector generation methods (blots, RT activity, standard PCR) as batches, (ii) the absence of the susceptible emerging well as a full description of the newest real-time quantitative replicative lentiviruses or (iii) the lentiviral vector biodistribu- PCR (qPCR) applications. Combinations of primer and probe tion in the organism. sequences, which have worked in the lentiviral amplification Gene Therapy (2005) 12, S36–S50. doi:10.1038/sj.gt.3302614 Keywords: real-time PCR; lentiviral vector; standardization Introduction This review points out the major progress undertaken for the standardization of some of these technical Lentiviral-derived transfer vectors have gained increased expertises. Associated with conventional detection attention because their karyophilic properties allow their methods, techniques derived from qPCR have been use for the transduction of quiescent cells.1,2 The applied in the lentiviral vector context for the evaluation acceptance of their use in clinical settings will require of titration, RCL and biodistribution in animal models. -
Section 2: Virology, HIV and Viral Load
Section 2: Virology, HIV and viral load www.i-Base.info Section 2: Virology, HIV and viral load 2 2.1 Introduction to Section 2 The second section provide information about HIV as a virus. What kind of infection is HIV; what happens after you are infected and how is the virus monitored? 2.2 Aims for Section 2 After reading section 2, advocates will have a basic understanding of: • The defnition of HIV. • The difference between different causes of illness: viruses, bacteria, fungi and parasites. • Viral load in early and chronic infection and the natural history of HIV. • The impact of coinfections on viral load. • Viral load tests and their accuracy. • Viral load in relation to whether or not you are taking HIV treatment (ART). • The HIV viral life cycle. • A basic theory of resistance. • CD4 count and viral load graphs and how to superimpose them. HIV i-Base: basic training for advocates S2:18 January 2016 Section 2: Virology, HIV and viral load www.i-Base.info 2.3 Defnition of HIV HIV stands for Human Immunodefciency Virus. Human – means it is a virus that infects humans. Immunodefciency – means it reduces the immune system. Virus – means that the infection is a virus! A virus is genetic organism that can only reproduce inside cells of another living organism. Some viruses are harmless and others can cause illness. Anti-viral drugs are used to treat viral infections. Viral infections that affect people with HIV include hepatitis A, B and C, herpes 2 (HSV-1 and HSV-2), cytomegalovirus (CMV), and human papilloma virus (HPV). -
Viral Vectors for COVID-19 Vaccine Development
viruses Review Viral Vectors for COVID-19 Vaccine Development Kenneth Lundstrom PanTherapeutics, CH1095 Lutry, Switzerland; [email protected] Abstract: Vaccine development against SARS-CoV-2 has been fierce due to the devastating COVID- 19 pandemic and has included all potential approaches for providing the global community with safe and efficient vaccine candidates in the shortest possible timeframe. Viral vectors have played a central role especially using adenovirus-based vectors. Additionally, other viral vectors based on vaccinia viruses, measles viruses, rhabdoviruses, influenza viruses and lentiviruses have been subjected to vaccine development. Self-amplifying RNA virus vectors have been utilized for lipid nanoparticle-based delivery of RNA as COVID-19 vaccines. Several adenovirus-based vaccine candidates have elicited strong immune responses in immunized animals and protection against challenges in mice and primates has been achieved. Moreover, adenovirus-based vaccine candidates have been subjected to phase I to III clinical trials. Recently, the simian adenovirus-based ChAdOx1 vector expressing the SARS-CoV-2 S spike protein was approved for use in humans in the UK. Keywords: SARS-CoV-2; COVID-19; vaccines; adenovirus; preclinical immunization; clinical trials; approved vaccine 1. Introduction Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has spread quickly around the world, causing the COVID-19 pandemic, which has seen more than 100 million infections, 2.15 million deaths and a severely damaged global economy [1]. The severity Citation: Lundstrom, K. Viral and spread of COVID-19 were unprecedented compared to previous coronavirus outbreaks Vectors for COVID-19 Vaccine for SARS-CoV in 2004–2005 [2] and Middle East Respiratory Coronavirus (MERS-CoV) Development. -
Re-Infection and Viral Shedding
// Threat Assessment Brief Reinfection with SARS-CoV-2: considerations for public health response 21 September 2020 Introduction Cases with suspected or possible reinfection with SARS-CoV-2 have been recently reported in different countries [1-4]. In many of these cases, it is uncertain if the individual’s Polymerase Chain Reaction (PCR) test remained positive for a long period of time following the first episode of infection or whether it represents a true reinfection. The aim of this Threat Assessment Brief is to elucidate the characteristics and frequency of confirmed SARS-CoV-2 reinfection in the literature, to summarise the findings about SARS-CoV-2 infection and antibody development, and to consider the following questions: • How can a SARS-CoV-2 reinfection be identified? • How common are SARS-CoV-2 reinfections? • What is known about the role of reinfection in onward transmission? • What do these observations mean for acquired immunity? Finally, options for public health response are proposed. Issues to be considered • Some patients with laboratory-confirmed SARS-CoV-2 infection have been identified to be PCR-positive over prolonged periods of time after infection and clinical recovery [5,6]. • The duration of viral RNA detection (identification of viral RNA through PCR testing in a patient) has been shown to be variable, with the detection of RNA in upper respiratory specimens shown up to 104 days after the onset of symptoms [7-9]. • Of note, patients have also been reported to have intermittent negative PCR tests, especially when the virus concentration in the sampled material becomes low or is around the detection limit of a test [4]. -
The Use of Antimicrobial and Antiviral Drugs in Alzheimer's Disease
International Journal of Molecular Sciences Review The Use of Antimicrobial and Antiviral Drugs in Alzheimer’s Disease Umar H. Iqbal, Emma Zeng and Giulio M. Pasinetti * Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA; [email protected] (U.H.I.); [email protected] (E.Z.) * Correspondence: [email protected]; Tel.: +1-212-241-7938 Received: 29 May 2020; Accepted: 10 July 2020; Published: 12 July 2020 Abstract: The aggregation and accumulation of amyloid-β plaques and tau proteins in the brain have been central characteristics in the pathophysiology of Alzheimer’s disease (AD), making them the focus of most of the research exploring potential therapeutics for this neurodegenerative disease. With success in interventions aimed at depleting amyloid-β peptides being limited at best, a greater understanding of the physiological role of amyloid-β peptides is needed. The development of amyloid-β plaques has been determined to occur 10–20 years prior to AD symptom manifestation, hence earlier interventions might be necessary to address presymptomatic AD. Furthermore, recent studies have suggested that amyloid-β peptides may play a role in innate immunity as an antimicrobial peptide. These findings, coupled with the evidence of pathogens such as viruses and bacteria in AD brains, suggests that the buildup of amyloid-β plaques could be a response to the presence of viruses and bacteria. This has led to the foundation of the antimicrobial hypothesis for AD. The present review will highlight the current understanding of amyloid-β, and the role of bacteria and viruses in AD, and will also explore the therapeutic potential of antimicrobial and antiviral drugs in Alzheimer’s disease.