MKL1 Promotes Endothelial-To-Mesenchymal
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SETD1B-Associated Neurodevelopmental Disorder
Genotype- phenotype correlations J Med Genet: first published as 10.1136/jmedgenet-2019-106756 on 16 June 2020. Downloaded from Original research SETD1B- associated neurodevelopmental disorder Alexandra Roston ,1 Dan Evans,2 Harinder Gill,1,3 Margaret McKinnon,1 Bertrand Isidor,4 Benjamin Cogné ,4,5 Jill Mwenifumbo,1,6 Clara van Karnebeek,7,8 Jianghong An,9 Steven J M Jones,9 Matthew Farrer,2 Michelle Demos,10 Mary Connolly,10 William T Gibson ,1 CAUSES Study, EPGEN Study ► Additional material is ABSTRACT same gene allows causal inference for those geno- published online only. To view Background Dysfunction of histone methyltransferases type–phenotype correlations. This is especially true please visit the journal online (http:// dx. doi. org/ 10. 1136/ and chromatin modifiers has been implicated in complex when perturbation of the general biological process jmedgenet- 2019- 106756). neurodevelopmental syndromes and cancers. SETD1B has, in similar contexts, been shown reproducibly encodes a lysine- specific methyltransferase that assists to result in similar phenotypes. For numbered affiliations see in transcriptional activation of genes by depositing Individual case reports have appeared in the end of article. H3K4 methyl marks. Previous reports of patients with literature describing neurodevelopmental delays rare variants in SETD1B describe a distinctive phenotype associated with rare coding variants in SETD1B, Correspondence to Dr Alexandra Roston, that includes seizures, global developmental delay and and with hemizygosity for SETD1B due to CNVs. Department of Medical intellectual disability. Here we show that pathogenic variants within Genetics, The University of Methods Two of the patients described herein were SETD1B contribute to a conserved phenotype that British Columbia, Vancouver, BC identified via genome-wide and exome-wide testing, includes intellectual disability and childhood- onset, V6T 1Z4, Canada; with microarray and research- based exome, through treatment- refractory seizures. -
MRTF: Basic Biology and Role in Kidney Disease
International Journal of Molecular Sciences Review MRTF: Basic Biology and Role in Kidney Disease Maria Zena Miranda 1, Zsuzsanna Lichner 1, Katalin Szászi 1,2 and András Kapus 1,2,3,* 1 Keenan Research Centre for Biomedical Science of the St. Michael’s Hospital, Toronto, ON M5B 1W8, Canada; [email protected] (M.Z.M.); [email protected] (Z.L.); [email protected] (K.S.) 2 Department of Surgery, University of Toronto, Toronto, ON M5T 1P5, Canada 3 Department of Biochemistry, University of Toronto, Toronto, ON M5S 1A8, Canada * Correspondence: [email protected] Abstract: A lesser known but crucially important downstream effect of Rho family GTPases is the regulation of gene expression. This major role is mediated via the cytoskeleton, the organization of which dictates the nucleocytoplasmic shuttling of a set of transcription factors. Central among these is myocardin-related transcription factor (MRTF), which upon actin polymerization translocates to the nucleus and binds to its cognate partner, serum response factor (SRF). The MRTF/SRF complex then drives a large cohort of genes involved in cytoskeleton remodeling, contractility, extracellular matrix organization and many other processes. Accordingly, MRTF, activated by a variety of mechanical and chemical stimuli, affects a plethora of functions with physiological and pathological relevance. These include cell motility, development, metabolism and thus metastasis formation, inflammatory responses and—predominantly-organ fibrosis. The aim of this review is twofold: to provide an up- to-date summary about the basic biology and regulation of this versatile transcriptional coactivator; and to highlight its principal involvement in the pathobiology of kidney disease. -
Substrate Stiffness-Dependent Regulation of the SRF−Mkl1 Co-Activator Complex Requires the Inner Nuclear Membrane Protein Emerin Margaret K
© 2017. Published by The Company of Biologists Ltd | Journal of Cell Science (2017) 130, 2111-2118 doi:10.1242/jcs.197517 SHORT REPORT Substrate stiffness-dependent regulation of the SRF−Mkl1 co-activator complex requires the inner nuclear membrane protein Emerin Margaret K. Willer and Christopher W. Carroll* ABSTRACT transcription is thought to underlie persistent myofibroblast The complex comprising serum response factor (SRF) and activation (Zhou et al., 2013). Thus, determining how mechanical − megakaryoblastic leukemia 1 protein (Mkl1) promotes myofibroblast cues modulate SRF Mkl1-dependent gene expression is critical to differentiation during wound healing. SRF−Mkl1 is sensitive to the understand wound healing and pathologies caused by altered ECM mechanical properties of the extracellular environment; but how cells mechanics. sense and transduce mechanical cues to modulate SRF−Mkl1- The nuclear lamina is a network of nuclear envelope-associated dependent gene expression is not well understood. Here, we intermediate filaments and their associated proteins. Recently, the demonstrate that the nuclear lamina-associated inner nuclear nuclear lamina proteins Lamins A/C and Emerin were shown to − membrane protein Emerin stimulates SRF−Mkl1-dependent gene promote SRF Mkl1-dependent transcription (Ho et al., 2014). activity in a substrate stiffness-dependent manner. Specifically, Actin-generated forces regulate Lamins A/C and Emerin (Buxboim Emerin was required for Mkl1 nuclear accumulation and maximal et al., 2014; Guilluy et al., 2014; Swift et al., 2013), but whether the − SRF−Mkl1-dependent gene expression in response to serum nuclear lamina contributes to the mechanical control of SRF Mkl1- stimulation of cells grown on stiff substrates but was dispensable on dependent gene expression has not been tested. -
UC San Diego UC San Diego Electronic Theses and Dissertations
UC San Diego UC San Diego Electronic Theses and Dissertations Title Regulation of gene expression programs by serum response factor and megakaryoblastic leukemia 1/2 in macrophages Permalink https://escholarship.org/uc/item/8cc7d0t0 Author Sullivan, Amy Lynn Publication Date 2009 Peer reviewed|Thesis/dissertation eScholarship.org Powered by the California Digital Library University of California UNIVERSITY OF CALIFORNIA, SAN DIEGO Regulation of Gene Expression Programs by Serum Response Factor and Megakaryoblastic Leukemia 1/2 in Macrophages A dissertation submitted in partial satisfaction of the requirements for the degree Doctor of Philosophy in Biomedical Sciences by Amy Lynn Sullivan Committee in charge: Professor Christopher K. Glass, Chair Professor Stephen M. Hedrick Professor Marc R. Montminy Professor Nicholas J. Webster Professor Joseph L. Witztum 2009 Copyright Amy Lynn Sullivan, 2009 All rights reserved. The Dissertation of Amy Lynn Sullivan is approved, and it is acceptable in quality and form for publication on microfilm and electronically: ______________________________________________________________ ______________________________________________________________ ______________________________________________________________ ______________________________________________________________ ______________________________________________________________ Chair University of California, San Diego 2009 iii DEDICATION To my husband, Shane, for putting up with me through all of the long hours, last minute late nights, and for not letting me quit no matter how many times my projects fell apart. To my son, Tyler, for always making me smile and for making every day an adventure. To my gifted colleagues, for all of the thought-provoking discussions, technical help and moral support through the roller- coaster ride that has been my graduate career. To my family and friends, for all of your love and support. I couldn’t have done it without you! iv EPIGRAPH If at first you don’t succeed, try, try, again. -
The Myocardin Family of Transcriptional Coactivators: Versatile Regulators of Cell Growth, Migration, and Myogenesis
Downloaded from genesdev.cshlp.org on October 6, 2021 - Published by Cold Spring Harbor Laboratory Press REVIEW The myocardin family of transcriptional coactivators: versatile regulators of cell growth, migration, and myogenesis G.C. Teg Pipes, Esther E. Creemers, and Eric N. Olson1 Department of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA The association of transcriptional coactivators with se- gene regulation and expands the regulatory potential of quence-specific DNA-binding proteins provides versatil- individual cis-regulatory elements. ity and specificity to gene regulation and expands the The regulation of serum response factor (SRF) and its regulatory potential of individual cis-regulatory DNA se- target genes provides a classic example of the diversity of quences. Members of the myocardin family of coactiva- genes controlled by a single DNA-binding protein and tors activate genes involved in cell proliferation, migra- the importance of cofactor interactions in the control of tion, and myogenesis by associating with serum re- gene expression (Shore and Sharrocks 1995). Among the sponse factor (SRF). The partnership of myocardin family many target genes of SRF are genes involved in cell pro- members and SRF also controls genes encoding compo- liferation and muscle differentiation, which represent nents of the actin cytoskeleton and confers responsive- opposing programs of gene expression: Muscle genes are ness to extracellular growth signals and intracellular repressed by growth factor signals and generally do not changes in the cytoskeleton, thereby creating a tran- become activated until myoblasts exit the cell cycle. The scriptional–cytoskeletal regulatory circuit. These func- ability of SRF to regulate different sets of downstream tions are reflected in defects in smooth muscle differen- effector genes depends on its association with positive tiation and function in mice with mutations in myocar- and negative cofactors (Treisman 1994; Shore and Shar- din family members. -
The H3K4 Methyltransferase Setd1b Is Essential for Hematopoietic Stem and Progenitor Cell Homeostasis in Mice
RESEARCH ARTICLE The H3K4 methyltransferase Setd1b is essential for hematopoietic stem and progenitor cell homeostasis in mice Kerstin Schmidt1, Qinyu Zhang2, Alpaslan Tasdogan3,4, Andreas Petzold5, Andreas Dahl5, Borros M Arneth6, Robert Slany7, Hans Jo¨ rg Fehling3, Andrea Kranz2*, Adrian Francis Stewart2*, Konstantinos Anastassiadis1* 1Stem Cell Engineering, Biotechnology Center, Technische Universita¨ t Dresden, Dresden, Germany; 2Genomics, Biotechnology Center, Technische Universita¨ t Dresden, Dresden, Germany; 3Institute of Immunology, University Hospital Ulm, Ulm, Germany; 4Department of Dermatology, University Hospital Ulm, Ulm, Germany; 5Deep Sequencing Group, DFG - Center for Regenerative Therapies Dresden, Dresden, Germany; 6Institute of Laboratory Medicine and Pathobiochemistry, Molecular Diagnostics, Hospital of the Universities Giessen and Marburg, Giessen, Germany; 7Department of Genetics, Friedrich Alexander Universita¨ t Erlangen, Erlangen, Germany Abstract Hematopoietic stem cells require MLL1, which is one of six Set1/Trithorax-type histone 3 lysine 4 (H3K4) methyltransferases in mammals and clinically the most important leukemia gene. Here, we add to emerging evidence that all six H3K4 methyltransferases play essential roles in the hematopoietic system by showing that conditional mutagenesis of Setd1b in adult mice provoked *For correspondence: aberrant homeostasis of hematopoietic stem and progenitor cells (HSPCs). Using both ubiquitous [email protected] (AK); and hematopoietic-specific deletion strategies, the loss of Setd1b resulted in peripheral thrombo- [email protected] and lymphocytopenia, multilineage dysplasia, myeloid-biased extramedullary hematopoiesis in the (AFS); spleen, and lethality. By transplantation experiments and expression profiling, we determined that konstantinos.anastassiadis@tu- Setd1b is autonomously required in the hematopoietic lineages where it regulates key lineage dresden.de (KA) specification components, including Cebpa, Gata1, and Klf1. -
Increased SRF Transcriptional Activity in Human and Mouse Skeletal Muscle Is a Signature of Insulin Resistance
Increased SRF transcriptional activity in human and mouse skeletal muscle is a signature of insulin resistance Wanzhu Jin, … , Jose Jimenez-Chillaron, Mary-Elizabeth Patti J Clin Invest. 2011;121(3):918-929. https://doi.org/10.1172/JCI41940. Research Article Metabolism Insulin resistance in skeletal muscle is a key phenotype associated with type 2 diabetes (T2D) for which the molecular mediators remain unclear. We therefore conducted an expression analysis of human muscle biopsies from patients with T2D; normoglycemic but insulin-resistant subjects with a parental family history (FH+) of T2D; and family history-negative control individuals (FH–). Actin cytoskeleton genes regulated by serum response factor (SRF) and its coactivator megakaryoblastic leukemia 1 (MKL1) had increased expression in T2D and FH+ groups. Furthermore, striated muscle activator of Rho signaling (STARS), an activator of SRF, was upregulated in T2D and FH+ and was inversely correlated with insulin sensitivity. Skeletal muscle from insulin-resistant mice recapitulated this gene expression pattern and showed reduced G-actin and increased nuclear localization of MKL1, each of which regulates SRF activity. Overexpression of MKL1 or reduction in G-actin decreased insulin-stimulated Akt phosphorylation, whereas reduction of STARS expression increased insulin signaling and glucose uptake. Pharmacological SRF inhibition by CCG-1423 reduced nuclear MKL1 and improved glucose uptake and tolerance in insulin-resistant mice in vivo. Thus, SRF pathway alterations are linked to insulin resistance, may contribute to T2D pathogenesis, and could represent therapeutic targets. Find the latest version: https://jci.me/41940/pdf Research article Increased SRF transcriptional activity in human and mouse skeletal muscle is a signature of insulin resistance Wanzhu Jin,1 Allison B. -
Associations Between Human Disease Genes and Overlapping Gene Groups and Multiple Amino Acid Runs
Associations between human disease genes and overlapping gene groups and multiple amino acid runs Samuel Karlin*†, Chingfer Chen*, Andrew J. Gentles*, and Michael Cleary‡ Departments of *Mathematics and ‡Pathology, Stanford University, Stanford, CA 94305 Contributed by Samuel Karlin, October 30, 2002 Overlapping gene groups (OGGs) arise when exons of one gene are Chr 22. Such rearrangements may be mediated by recombination contained within the introns of another. Typically, the two over- events based on region-specific low copy repeats. The DGS lapping genes are encoded on opposite DNA strands. OGGs are region of 22q11.2 is particularly rich with segmental duplications, often associated with specific disease phenotypes. In this report, which can induce deletions, translocations, and genomic insta- we identify genes with OGG architecture and genes encoding bility (4). There are several anomalous sequence features asso- multiple long amino acid runs and examine their relations to ciated with OGGs, including Alu sequences intersecting exons, diseases. OGGs appear to be susceptible to genomic rearrange- pseudogenes occupying introns, and single-exon (intronless) ments as happens commonly with the loci of the DiGeorge syn- genes that often result from a processed multiexon gene. drome on human chromosome 22. We also examine the degree of At least 28 genes in Chr 21 are related to diseases, as conservation of OGGs between human and mouse. Our analyses characterized in the GeneCards database (5), as are 64 genes in suggest that (i) a high proportion of genes in OGG regions are Chr 22. Specific disorders that have been mapped to genes on disease-associated, (ii) genomic rearrangements are likely to occur Chr 21 and that involve OGG structures include: amyotrophic within OGGs, possibly as a consequence of anomalous sequence lateral sclerosis (ALS, Lou Gehrig’s disease), linked to the features prevalent in these regions, and (iii) multiple amino acid GRIK1 ionotrophic kainate 1 glutamate receptor gene at 21q22 runs are also frequently associated with pathologies. -
Identification of a Novel Actin-Dependent Signal Transducing
ARTICLE Received 12 Nov 2014 | Accepted 9 Jul 2015 | Published 27 Aug 2015 DOI: 10.1038/ncomms9023 OPEN Identification of a novel actin-dependent signal transducing module allows for the targeted degradation of GLI1 Philipp Schneider1, Juan Miguel Bayo-Fina2, Rajeev Singh1, Pavan Kumar Dhanyamraju1, Philipp Holz1, Aninja Baier3, Volker Fendrich3, Annette Ramaswamy4, Stefan Baumeister5, Elisabeth D. Martinez2 & Matthias Lauth1 The Down syndrome-associated DYRK1A kinase has been reported as a stimulator of the developmentally important Hedgehog (Hh) pathway, but cells from Down syndrome patients paradoxically display reduced Hh signalling activity. Here we find that DYRK1A stimulates GLI transcription factor activity through phosphorylation of general nuclear localization clusters. In contrast, in vivo and in vitro experiments reveal that DYRK1A kinase can also function as an inhibitor of endogenous Hh signalling by negatively regulating ABLIM proteins, the actin cytoskeleton and the transcriptional co-activator MKL1 (MAL). As a final effector of the DYRK1A-ABLIM-actin-MKL1 sequence, we identify the MKL1 interactor Jumonji domain demethylase 1A (JMJD1A) as a novel Hh pathway component stabilizing the GLI1 protein in a demethylase-independent manner. Furthermore, a Jumonji-specific small-molecule antagonist represents a novel and powerful inhibitor of Hh signal transduction by inducing GLI1 protein degradation in vitro and in vivo. 1 Department of Medicine, Philipps University, Institute of Molecular Biology and Tumor Research (IMT), Center for Tumor Biology and Immunology, Hans- Meerwein-Street 3, 35043 Marburg, Germany. 2 Department of Pharmacology, UT Southwestern Medical Center, 6000 Harry Hines boulevard, Dallas, Texas 75390-8593, USA. 3 Department of Surgery, Philipps University, Baldingerstrae 1, 35033 Marburg, Germany. -
Molecular Genetics Lab Requisition
LABORATORY OF GENETICS AND GENOMICS Mailing Address: For local courier service and/or inquiries, please contact 513-636-4474 • Fax: 513-636-4373 3333 Burnet Avenue, Room R1042 www.cincinnatichildrens.org/moleculargenetics • Email: [email protected] Cincinnati, OH 45229 MOLECULAR GENETICS TEST REQUISITION All Information Must Be Completed Before Sample Can Be Processed PATIENT INFORMATION ETHNIC/RACIAL BACKGROUND (Choose All) Patient Name: _____________________, ___________________, ________ European American (White) African-American (Black) Last First MI Native American or Alaskan Asian-American Address: _____________________________________________________ Pacific Islander Ashkenazi Jewish ancestry _____________________________________________________ Latino-Hispanic _____________________________________________ Home Phone: _________________________________________________ (specify country/region of origin) MR# __________________ Date of Birth ________ / ________ / ________ Other ____________________________________________________ (specify country/region of origin) Gender: Male Female BILLING INFORMATION (Choose ONE method of payment) o REFERRING INSTITUTION o COMMERCIAL INSURANCE* Insurance can only be billed if requested at the time of service. Institution: ____________________________________________________ Policy Holder Name: _____________________________________________ Address: _____________________________________________________ Gender: ________________ Date of Birth ________ / ________ / _______ City/State/Zip: -
Inhibition of the Myocardin-Related Transcription Factor Pathway Increases Efficacy of Trametinib in NRAS-Mutant Melanoma Cell L
cancers Article Inhibition of the Myocardin-Related Transcription Factor Pathway Increases Efficacy of Trametinib in NRAS-Mutant Melanoma Cell Lines Kathryn M. Appleton 1, Charuta C. Palsuledesai 1, Sean A. Misek 2, Maja Blake 1, Joseph Zagorski 1, Kathleen A. Gallo 2, Thomas S. Dexheimer 1 and Richard R. Neubig 1,3,* 1 Department of Pharmacology and Toxicology, Michigan State University, East Lansing, MI 48824, USA; [email protected] (K.M.A.); [email protected] (C.C.P.); [email protected] (M.B.); [email protected] (J.Z.); [email protected] (T.S.D.) 2 Department of Physiology, Michigan State University, East Lansing, MI 48824, USA; [email protected] (S.A.M.); [email protected] (K.A.G.) 3 Department of Medicine, Division of Dermatology, Michigan State University, East Lansing, MI 48824, USA * Correspondence: [email protected]; Tel.: +1-517-353-7145 Simple Summary: Malignant melanoma is the most aggressive skin cancer, and treatment is often ineffective due to the development of resistance to targeted therapeutic agents. The most prevalent form of melanoma with a mutated BRAF gene has an effective treatment, but the second most common mutation in melanoma (NRAS) leads to tumors that lack targeted therapies. In this study, we show that NRAS mutant human melanoma cells that are most resistant to inhibition of the oncogenic pathway have a second activated pathway (Rho). Inhibiting that pathway at one of several Citation: Appleton, K.M.; points can produce more effective cell killing than inhibition of the NRAS pathway alone. This raises Palsuledesai, C.C.; Misek, S.A.; Blake, the possibility that such a combination treatment could prove effective in those melanomas that fail M.; Zagorski, J.; Gallo, K.A.; to respond to existing targeted therapies such as vemurafenib and trametinib. -
Mkl2 Fl/Fl, NPHS2-Cre Mice Were Characterized Previously.1-4
1 SUPPLEMENTAL MATERIAL Detailed Methods Animals Srf fl/fl, Mkl1 -/-, Mkl2 fl/fl, NPHS2-Cre mice were characterized previously.1-4 Homozygous floxed Srf (Srf fl/fl) and NPHS2-Cre+/- mice were used to generate Srf fl/fl and Srf fl/+/NPHS2-Cre controls and mice of Srf knockout genotype Srf fl/fl/NPHS2-Cre. Mkl1 -/-, Mkl2 fl/fl, NPHS2-Cre mice were utilized to generate Mkl1 single knockout (Mkl1 -/-, Mkl1 -/-/Mkl2 fl/+, Mkl1 -/-/Mkl2 fl/fl, or Mkl1 -/-/NPHS2-Cre), Mkl2 single knockout (Mkl2 fl/fl/NPHS2-Cre), Mkl1/Mkl2 double knockout (Mkl1 -/-/Mkl2 fl/fl/NPHS2-Cre) and 3- allele-knockout (Mkl1 +/-/Mkl2 fl/fl/NPHS2-Cre and Mkl1 -/-/Mkl2 fl/+/NPHS2-Cre). Genotyping PCR primers are listed in Supplemental Table 1. Animals were treated in accordance with NIH animal care guidelines and all animal experiments were approved by the Institutional Animal Care and Use Committee of the University of Rochester School of Medicine and Dentistry. Sections of de-identified human kidney biopsies were obtained with approval from University of Rochester School of Medicine and Dentistry Research Subjects Review Board (RSRB00062813). Urine, serum and body weight analysis Urine from control and Srf KO mice at three, four, and six weeks was collected between 6:00AM and 8:00AM on each collecting day. Urine dipstick assay was 2 performed using Iris™ Diagnostics vChem™ Urine Chemistry Strips (Fisher Scientific, Hampton, NH). The protein level and number of white blood cells and red blood cells were analyzed to evaluate proteinuria, leukocyturia and hematuria. In order to semi- quantify the severity of these parameters, different indices were assigned to each corresponding range of readings in accordance with the manufacturer.