NOIDs Weekly Report STATUTORY NOTIFICATION OF INFECTIOUS DISEASES CAUSATIVE AGENTS

2019/31 WEEK ENDING: 04/08/2019

Laboratories in England have a statutory duty to notify Public Health England of the identification of the following causative agents: BACILLUS ANTHRACIS GUANARITO VIRUS PLASMODIUM FALCIPARUM BACILLUS CEREUS HAEMOPHILUS INFLUENZAE PLASMODIUM KNOWLESI BORDETELLA PERTUSSIS (INVASIVE) PLASMODIUM MALARIAE BORRELIA SPP HANTA VIRUS PLASMODIUM OVALE BRUCELLA SPP HEPATITIS A PLASMODIUM VIVAX BURKHOLDERIA MALLEI HEPATITIS B POLIO VIRUS BURKHOLDERIA HEPATITIS C RABIES VIRUS PSEUDOMALLEI HEPATITIS D RICKETTSIA SPP CAMPYLOBACTER SPP HEPATITIS E RIFT VALLEY FEVER VIRUS CHIKUNGUNYA VIRUS INFLUENZA VIRUS RUBELLA VIRUS CHLAMYDOPHILA PSITTACI JUNIN VIRUS SABIA VIRUS CLOSTRIDIUM BOTULINUM KYASANUR FOREST SALMONELLA SPP CLOSTRIDIUM DISEASE SARS CORONAVIRUS PERFRINGENS LASSA VIRUS SHIGELLA SPP CLOSTRIDIUM TETANI LEGIONELLA SPP STREPTOCOCCUS GROUP CORYNEBACTERIUM LEPTOSPIRA INTERROGANS A (INVASIVE) DIPHTHERIAE LISTERIA STREPTOCOCCUS CORYNEBACTERIUM MONOCYTOGENES PNEUMONIAE (INVASIVE) ULCERANS MACHUPO VIRUS VARICELLA ZOSTER VIRUS COXIELLA BURNETII MARBURG VIRUS VARIOLA VIRUS CRIMEAN-CONGO MEASLES VIRUS VIBRIO CHOLERAE HAEMORRHAGIC FEVER MUMPS VIRUS WEST NILE VIRUS VIRUS MYCOBACTERIUM YELLOW FEVER VIRUS CRYPTOSPORIDIUM SPP TUBERCULOSIS COMPLEX YERSINIA PESTIS DENGUE VIRUS NEISSERIA MENINGITIDIS EBOLA VIRUS ENTAMOEBA HISTOLYTICA OMSK HAEMORRHAGIC ESCHERICHIA COLI O 157 FEVER VIRUS FRANCISELLA TULARENSIS GIARDIA LAMBLIA Table 1: Statutory Notifications of causative agents, grouped by root organism, with totals for the current week compared to the previous five.

Week notification received 201926 201927 201928 201929 201930 201931 ARBOVIRUSES WEST NILE VIRUS - - - - 1 1 BACILLUS BACILLUS CEREUS 28 36 34 25 30 29 BORDETELLA BORDETELLA PERTUSSIS 38 56 52 35 46 35 BORRELIA BORRELIA BURGDORFERI 18 15 38 31 40 16 BORRELIA SP 3 3 1 7 2 5 BRUCELLA BRUCELLA MELITENSIS 1 - - - 1 - CAMPYLOBACTER CAMPYLOBACTER COLI 33 48 25 29 32 28 CAMPYLOBACTER FETUS - - - 1 - 1 CAMPYLOBACTER - - - - 1 - HELVETICUS CAMPYLOBACTER JEJUNI 295 349 249 330 232 267 CAMPYLOBACTER LARI 1 1 2 - - - CAMPYLOBACTER OTHER 3 - - 1 - - NAMED CAMPYLOBACTER SP 1214 1319 1302 1162 1192 1050 CAMPYLOBACTER - 3 - - 3 - UPSALIENSIS CAMPYLOBACTER - - - 1 - - UREOLYTICUS (BACTEROIDES CORRODENS) CHIKUNGUNYA VIRUS CHIKUNGUNYA VIRUS 1 - 1 1 1 1 CLOSTRIDIUM CLOSTRIDIUM PERFRINGENS 19 20 26 21 20 27 CORYNEBACTERIUM CORYNEBACTERIUM 2 3 1 1 - 1 DIPHTHERIAE COXIELLA COXIELLA BURNETII - 2 - - 5 3 Table 1: Statutory Notifications of causative agents, grouped by root organism, with totals for the current week compared to the previous five.

Week notification received 201926 201927 201928 201929 201930 201931 CRYPTOSPORIDIUM CRYPTOSPORIDIUM HOMINIS 1 3 1 - - - CRYPTOSPORIDIUM PARVUM 3 2 3 - 2 1 CRYPTOSPORIDIUM SP 44 79 80 68 68 63 ENTAMOEBA ENTAMOEBA HISTOLYTICA 1 2 1 5 4 - ESCHERICHIA ESCHERICHIA COLI O 157 12 17 8 12 10 9 FLAVIVIRUSES DENGUE VIRUS 3 1 3 2 8 - HAEMOPHILUS HAEMOPHILUS INFLUENZAE 65 63 75 56 65 57 HEPATITIS VIRUSES HEPATITIS A 39 13 16 13 11 9 HEPATITIS B 164 162 136 141 157 120 HEPATITIS C 286 308 340 328 394 387 HEPATITIS D 2 2 3 4 1 1 HEPATITIS E 24 22 30 26 22 21 INFLUENZA VIRUS INFLUENZA A 40 48 29 41 34 29 INFLUENZA B 9 10 4 12 8 8 INFLUENZA UNGROUPED 10 4 2 5 6 7 LEGIONELLA LEGIONELLA OTHER NAMED - - 1 - - - LEGIONELLA PNEUMOPHILA 7 12 6 8 7 10 LEGIONELLA SP 3 1 2 - 1 - LISTERIA LISTERIA MONOCYTOGENES 3 5 3 6 - 4 MYCOBACTERIUM MYCOBACTERIUM 70 76 80 70 69 56 TUBERCULOSIS Table 1: Statutory Notifications of causative agents, grouped by root organism, with totals for the current week compared to the previous five.

Week notification received 201926 201927 201928 201929 201930 201931 NEISSERIA NEISSERIA MENINGITIDIS 14 10 16 6 15 10 PARAMYXOVIRUSES MEASLES VIRUS 8 9 11 8 10 4 MUMPS VIRUS 48 49 56 64 31 31 PLASMODIUM PLASMODIUM FALCIPARUM 3 22 3 10 1 2 PLASMODIUM MALARIAE - 1 - - - 1 PLASMODIUM OVALE - - - 1 - - PLASMODIUM VIVAX - 1 - - - - POLYOMAVIRUS POLYOMAVIRUS BK 33 29 33 30 25 45 POLYOMAVIRUS JC 3 3 3 2 3 1 RICKETTSIA RICKETTSIA SP 1 - - 1 - 1 RICKETTSIA SPOTTED FEVER 2 - - - - - RUBELLA VIRUS RUBELLA VIRUS 7 3 2 1 1 1 SALMONELLA OTHER SALMONELLAS 58 64 63 53 35 19 SALMONELLA AGONA - 7 - - - - SALMONELLA ENTERICA 13 12 9 - - - SALMONELLA ENTERITIDIS 48 54 52 49 25 22 SALMONELLA NEWPORT 10 - 9 7 - - SALMONELLA SP 12 14 16 48 142 151 SALMONELLA STANLEY - - - 5 - - SALMONELLA TYPHI AND 7 7 - 6 9 - PARATYPHI SALMONELLA TYPHIMURIUM 33 25 27 32 19 13 SHIGELLA SHIGELLA BOYDII 2 - 1 2 1 1 SHIGELLA DYSENTERIAE 1 - - - - - Week notification received 201926 201927 201928 201929 201930 201931 SHIGELLA FLEXNERI 8 15 16 8 8 13 SHIGELLA SONNEI 25 10 17 17 13 18 SHIGELLA SP 26 26 25 21 30 30 STREPTOCOCCUS STREPTOCOCCUS GROUP A 55 48 38 57 44 53 STREPTOCOCCUS 90 91 97 81 77 57 PNEUMONIAE VIBRIO VIBRIO CHOLERAE 1 - - 2 - 3