Whole-Genome Comparison Between the Type Strain of Halobacterium Salinarum (DSM 3754T) and the Laboratory Strains R1 and NRC-1

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Whole-genome comparison between the type strain of Halobacterium salinarum (DSM 3754T) and the laboratory strains R1 and NRC-1. Friedhelm Pfeiffer, Gerald Losensky, Anita Marchfelder, Bianca Habermann and Mike Dyall-Smith MicrobiologyOpen, 2019, accepted Note: This document contains Supplementary Tables for the above manuscript. The legends use some terms which are only defined in the context of that manuscript. Here is one paragraph from that manuscript which briefly describes the content of the tables. Correlation of protein-coding genes among Halobacterium salinarum strains 91-R6T, R1, and NRC-1. As an annotation principle, every gene encoding a protein on a matching genome segment in one strain must have a correlated gene in the other strain. The gene sets of the three strains have been correlated in detail (for details see Methods of the associated manuscript and Appendix A4 and A5). Proteins are classified as strain- specific only after validation by tBLASTn that they are not mere missing gene calls. Correlated proteins, encoded on the chromosome of strains 91- R6 and R1 are listed in Table S1 (1986 proteins). The corresponding proteins from strain NRC-1 are also listed. In addition, there are regions of very high similarity between the plasmids from strains 91-R6 and R1, there are plasmid encoded correlated proteins, which are listed in Table S2. Furthermore, Table S2 lists proteins which are encoded on a plasmid in strain R1 but in a strain-specific region of the chromosome from strain 91- R6. Chromosomally encoded proteins from strain-specific regions of 91-R6 are listed in Table S3. In several cases, a homolog exists in R1 but the genes are not positionally correlated. Such homologs are also listed in Table S3. Residual proteins which are specific for the chromosome of strain R1 are listed in Table S4. Plasmid encoded proteins specific for strain 91-R6 are listed in Table S5, while plasmid encoded proteins specific for strain R1 are listed in Table S6. A few protein-coding genes exist in strain NRC-1 but are absent in both, strains 91-R6 and R1. These are listed in Table S7. Finally, Table S8 lists ORFs which are annotated in the current version of the NRC-1 genome (AE004437, AE004438, AF016485) but which are considered not to code for a protein (spurious ORFs; for definition see Appendix A4 in the associated manuscript).

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Annual Report DDUV 2009
Research at the de Duve Institute and Brussels Branch of the Ludwig Institute for Cancer Research August 2009 de Duve Institute Introduction 5 Miikka Vikkula 12 Frédéric Lemaigre 20 Annabelle Decottignies and Charles de Smet 25 Emile Vanschaftingen 31 Françoise Bontemps 37 Jean-François Collet 42 Guido Bommer 47 Mark Rider 50 Fred Opperdoes 56 Pierre Courtoy 62 Etienne Marbaix 69 Jean-Baptiste Demoulin 75 Jean-Paul Coutelier 80 Thomas Michiels 84 Pierre Coulie 89 LICR Introduction 95 Benoît Van den Eynde 98 Pierre van der Bruggen 106 Nicolas Van Baren 114 Jean-Christophe Renauld 119 Stefan Constantinescu 125 The de Duve Institute 5 THE DE DUVE INSTITUTE: AN INTERNATIONAL BIOMEDICAL RESEARCH INSTITUTE In 1974, when Christian de Duve founded the Institute of Cellular Pathology (ICP), now rena- med the de Duve Institute, he was acutely aware of the constrast between the enormous progress in biological sciences that had occurred in the 20 preceding years and the modesty of the medical advances that had followed. He therefore crea- ted a research institution based on the principle that basic research in biology would be pursued by the investigators with complete freedom, but that special attention would be paid to the exploi- tation of basic advances for medical progress. It was therefore highly appropriate for the Institute to be located on the campus of the Faculty of Emile Van Schaftingen Medicine of the University of Louvain (UCL). This campus is located in Brussels. The Univer- sity hospital (Clinique St Luc) is located within walking distance of the Institute. The main commitment of the members of the de Duve Institute is research.
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Downloaded from the App Store and Nucleobase, Nucleotide and Nucleic Acid Metabolism 7 Google Play
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And Type the TITLE of YOUR WORK in All Caps
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