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A Dated Phylogeny of Marsupials Using a Molecular Supermatrix and Multiple Fossil Constraints
Journal of Mammalogy, 89(1):175–189, 2008 A DATED PHYLOGENY OF MARSUPIALS USING A MOLECULAR SUPERMATRIX AND MULTIPLE FOSSIL CONSTRAINTS ROBIN M. D. BECK* School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, New South Wales 2052, Australia Downloaded from https://academic.oup.com/jmammal/article/89/1/175/1020874 by guest on 25 September 2021 Phylogenetic relationships within marsupials were investigated based on a 20.1-kilobase molecular supermatrix comprising 7 nuclear and 15 mitochondrial genes analyzed using both maximum likelihood and Bayesian approaches and 3 different partitioning strategies. The study revealed that base composition bias in the 3rd codon positions of mitochondrial genes misled even the partitioned maximum-likelihood analyses, whereas Bayesian analyses were less affected. After correcting for base composition bias, monophyly of the currently recognized marsupial orders, of Australidelphia, and of a clade comprising Dasyuromorphia, Notoryctes,and Peramelemorphia, were supported strongly by both Bayesian posterior probabilities and maximum-likelihood bootstrap values. Monophyly of the Australasian marsupials, of Notoryctes þ Dasyuromorphia, and of Caenolestes þ Australidelphia were less well supported. Within Diprotodontia, Burramyidae þ Phalangeridae received relatively strong support. Divergence dates calculated using a Bayesian relaxed molecular clock and multiple age constraints suggested at least 3 independent dispersals of marsupials from North to South America during the Late Cretaceous or early Paleocene. Within the Australasian clade, the macropodine radiation, the divergence of phascogaline and dasyurine dasyurids, and the divergence of perameline and peroryctine peramelemorphians all coincided with periods of significant environmental change during the Miocene. An analysis of ‘‘unrepresented basal branch lengths’’ suggests that the fossil record is particularly poor for didelphids and most groups within the Australasian radiation. -
A Phylogeny and Timescale for Marsupial Evolution Based on Sequences for Five Nuclear Genes
J Mammal Evol DOI 10.1007/s10914-007-9062-6 ORIGINAL PAPER A Phylogeny and Timescale for Marsupial Evolution Based on Sequences for Five Nuclear Genes Robert W. Meredith & Michael Westerman & Judd A. Case & Mark S. Springer # Springer Science + Business Media, LLC 2007 Abstract Even though marsupials are taxonomically less diverse than placentals, they exhibit comparable morphological and ecological diversity. However, much of their fossil record is thought to be missing, particularly for the Australasian groups. The more than 330 living species of marsupials are grouped into three American (Didelphimorphia, Microbiotheria, and Paucituberculata) and four Australasian (Dasyuromorphia, Diprotodontia, Notoryctemorphia, and Peramelemorphia) orders. Interordinal relationships have been investigated using a wide range of methods that have often yielded contradictory results. Much of the controversy has focused on the placement of Dromiciops gliroides (Microbiotheria). Studies either support a sister-taxon relationship to a monophyletic Australasian clade or a nested position within the Australasian radiation. Familial relationships within the Diprotodontia have also proved difficult to resolve. Here, we examine higher-level marsupial relationships using a nuclear multigene molecular data set representing all living orders. Protein-coding portions of ApoB, BRCA1, IRBP, Rag1, and vWF were analyzed using maximum parsimony, maximum likelihood, and Bayesian methods. Two different Bayesian relaxed molecular clock methods were employed to construct a timescale for marsupial evolution and estimate the unrepresented basal branch length (UBBL). Maximum likelihood and Bayesian results suggest that the root of the marsupial tree is between Didelphimorphia and all other marsupials. All methods provide strong support for the monophyly of Australidelphia. Within Australidelphia, Dromiciops is the sister-taxon to a monophyletic Australasian clade. -
Aptian–Albian) of Texas and Oklahoma
Reappraisal of the tribosphenidan mammals from the Trinity Group (Aptian–Albian) of Texas and Oklahoma BRIAN M. DAVIS and RICHARD L. CIFELLI Davis, B.M. and Cifelli, R.L. 2011. Reappraisal of the tribosphenidan mammals from the Trinity Group (Aptian–Albian) of Texas and Oklahoma. Acta Palaeontologica Polonica 56 (3): 441–462. The Trinity therians have long been the focus of attempts to reconstruct the evolutionary history of higher mammals, es− pecially in the context of the development of tribospheny. In this paper, we update the taxonomy of the tribosphenidan taxa known from the Trinity Group and establish with more confidence the premolar/molar count in each. Many isolated specimens can be referred to a specific tooth locus. Additional diversity is revealed within the Deltatheroida, with the de− scription of an additional species of Oklatheridium; Pappotherium is here considered a likely metatherian based on the in− ferred presence of four molars, while Holoclemensia is a basal eutherian (the opposite of some traditional interpretations). The remainder of the genera, Kermackia and Slaughteria, cannot be allied with either of the living groups of tribo− sphenidan mammals using the available data. We identify strong morphological diversity within this assemblage of stem taxa, including modifications to the traditional tribosphenic occlusal pattern in Kermackia. Mammalian evolution at the base of the tribosphenidan radiation was complex, and this underscores the need for caution when interpreting the mor− phology and relationships of taxa known by incomplete material. Key words: Tribosphenida, Metatheria, Eutheria, Deltatheroida, Trinity Group, Early Cretaceous. Brian M. Davis [[email protected]] and Richard L. Cifelli [[email protected]], Department of Zoology and Sam Noble Oklahoma Museum of Natural History, University of Oklahoma, 2401 Chautauqua Ave, Norman, OK, 73072, USA. -
Fossil Calibration Schemes the Soft Explosive Model Of
Supplemental File 2: Fossil calibration schemes The soft explosive model of placental mammal evolution Matthew J. Phillips*,1 and Carmelo Fruciano1 1School of Earth, Environmental and Biological Sciences, Queensland University of Technology, Brisbane, Australia *Corresponding author: E-mail: [email protected] Contents Fossil Calibration schemes ......................................................................................................... 1 Table S2 .................................................................................................................................. 1 New calibrations ..................................................................................................................... 3 Figure S2 ................................................................................................................................ 7 References ............................................................................................................................ 10 Calibration schemes Table S2. Soft-bound calibrations employed for the MCMCtree analyses of the 122-taxon, 128- taxon, and 57-taxon empirical datasets. Calibrations among placental mammals are largely based on dos Reis et al. [1], hence the designations dR32 and dR40 (numbers indicating the number of calibrations). Several new calibrations, including some inspired by Springer et al. [2], are described below the table. Also note that the 122-taxon dR40, 128-taxon and 57-taxon analyses employ bounds as listed below, whereas the dR32 analyses, -
Mammals from the Mesozoic of Mongolia
Mammals from the Mesozoic of Mongolia Introduction and Simpson (1926) dcscrihed these as placental (eutherian) insectivores. 'l'he deltathcroids originally Mongolia produces one of the world's most extraordi- included with the insectivores, more recently have narily preserved assemblages of hlesozoic ma~nmals. t)een assigned to the Metatheria (Kielan-Jaworowska Unlike fossils at most Mesozoic sites, Inany of these and Nesov, 1990). For ahout 40 years these were the remains are skulls, and in some cases these are asso- only Mesozoic ~nanimalsknown from Mongolia. ciated with postcranial skeletons. Ry contrast, 'I'he next discoveries in Mongolia were made by the Mesozoic mammals at well-known sites in North Polish-Mongolian Palaeontological Expeditions America and other continents have produced less (1963-1971) initially led by Naydin Dovchin, then by complete material, usually incomplete jaws with den- Rinchen Barsbold on the Mongolian side, and Zofia titions, or isolated teeth. In addition to the rich Kielan-Jaworowska on the Polish side, Kazi~nierz samples of skulls and skeletons representing Late Koualski led the expedition in 1964. Late Cretaceous Cretaceous mam~nals,certain localities in Mongolia ma~nmalswere collected in three Gohi Desert regions: are also known for less well preserved, but important, Bayan Zag (Djadokhta Formation), Nenlegt and remains of Early Cretaceous mammals. The mammals Khulsan in the Nemegt Valley (Baruungoyot from hoth Early and Late Cretaceous intervals have Formation), and llcrmiin 'ISav, south-\vest of the increased our understanding of diversification and Neniegt Valley, in the Red beds of Hermiin 'rsav, morphologic variation in archaic mammals. which have heen regarded as a stratigraphic ecluivalent Potentially this new information has hearing on the of the Baruungoyot Formation (Gradzinslti r't crl., phylogenetic relationships among major branches of 1977). -
2005-01 R&C Newsletter
Research & Collections News The Occasional Newsletter of the Research and Collections Staff Natural History Museum of Los Angeles County re•search (rī-sûrch′, rē′sûrch) n. 1. Scholarly or scientific investigation or inquiry. See synonyms at inquiry. 2. Close, careful study. 3. When performed on collections, the raison d’être of all great natural history museums. January, 2005 (covering the months of November and December, 2004) Collection News Mineral Sciences Several very fine mineral and gem specimens were donated to the Museum at the end of 2004 by two long-time supporters, greatly enriching the Gem and Mineral Collection. Mel Hindin donated three sapphire crystals from Sri Lanka, a rubellite tourmaline crystal from Brazil and a bi-color tourmaline crystal and a pink tourmaline gem from California. Most notable are the two tourmaline crystals. The 15-cm-tall rubellite is from one of the world’s most famous tourmaline discoveries, which occurred in 1978 at the Jonas mine in Minas Gerais, Brazil. The 19-cm-tall green/pink bi- color crystal is from one of California’s most famous tourmaline discoveries, which occurred in 2001 and 2002 at the Cryo-Genie mine near Warner Springs in San Diego County. All of the specimens donated by Mel Hindin are already on display in the Hall of Gems and Minerals. At left: Rubellite Tourmaline – Jonas mine, Minas Gerais, Brazil At right: Bi-color Tourmaline – Cryo-Genie mine, San Diego County, California Beverly Savinar donated three exceptional mineral specimens from the collection she and her late husband Hyman built. Perhaps, the most striking is 16-cm-tall crystallized gold on quartz from the Eagle’s Nest mine in Placer County, California. -
Riversleigh World Heritage Area Brochure
ecological and biological processes. processes. biological and ecological processes. biological and ecological examples representing significant ongoing ongoing significant representing examples ongoing significant representing examples in Queensland. in Queensland. in stages of earth’s history, and Outstanding Outstanding and history, earth’s of stages Outstanding and history, earth’s of stages , including Riversleigh, are are Riversleigh, including , 5 — List Heritage World are Riversleigh, including , 5 — List Heritage World Outstanding examples representing major major representing examples Outstanding major representing examples Outstanding There are 19 Australian properties on the the on properties Australian 19 are There the on properties Australian 19 are There experiencemountisa.com.au experiencemountisa.com.au two of the ten World Heritage criteria: criteria: Heritage World ten the of two criteria: Heritage World ten the of two Amazon Rainforest. Rainforest. Amazon Rainforest. Amazon of years ago. For more information visit visit information more For ago. years of visit information more For ago. years of the World Heritage List in 1994. Both areas meet meet areas Both 1994. in List Heritage World the meet areas Both 1994. in List Heritage World the Canyon, the Egyptian Pyramids and the the and Pyramids Egyptian the Canyon, the and Pyramids Egyptian the Canyon, within the Riversleigh landscape as it was millions millions was it as landscape Riversleigh the within millions was it as landscape Riversleigh the within Riversleigh and Naracoorte were inscribed on on inscribed were Naracoorte and Riversleigh on inscribed were Naracoorte and Riversleigh Other World Heritage Sites include the Grand Grand the include Sites Heritage World Other Grand the include Sites Heritage World Other fascinating reconstructions of prehistoric animals animals prehistoric of reconstructions fascinating animals prehistoric of reconstructions fascinating significance’ to all humanity. -
Pattern and Timing of Caviomorph Origins and Biogeography Middle
Downloaded from rspb.royalsocietypublishing.org on October 17, 2011 Middle Eocene rodents from Peruvian Amazonia reveal the pattern and timing of caviomorph origins and biogeography Pierre-Olivier Antoine, Laurent Marivaux, Darin A. Croft, Guillaume Billet, Morgan Ganerød, Carlos Jaramillo, Thomas Martin, Maëva J. Orliac, Julia Tejada, Ali J. Altamirano, Francis Duranthon, Grégory Fanjat, Sonia Rousse and Rodolfo Salas Gismondi Proc. R. Soc. B published online 12 October 2011 doi: 10.1098/rspb.2011.1732 Supplementary data "Data Supplement" http://rspb.royalsocietypublishing.org/content/suppl/2011/10/08/rspb.2011.1732.DC1.h tml References This article cites 31 articles, 8 of which can be accessed free http://rspb.royalsocietypublishing.org/content/early/2011/10/08/rspb.2011.1732.full.ht ml#ref-list-1 P<P Published online 12 October 2011 in advance of the print journal. Receive free email alerts when new articles cite this article - sign up in the box at the top Email alerting service right-hand corner of the article or click here Advance online articles have been peer reviewed and accepted for publication but have not yet appeared in the paper journal (edited, typeset versions may be posted when available prior to final publication). Advance online articles are citable and establish publication priority; they are indexed by PubMed from initial publication. Citations to Advance online articles must include the digital object identifier (DOIs) and date of initial publication. To subscribe to Proc. R. Soc. B go to: http://rspb.royalsocietypublishing.org/subscriptions This journal is © 2011 The Royal Society Downloaded from rspb.royalsocietypublishing.org on October 17, 2011 Proc. -
New Late Cretaceous Mammals of Southern Kazakhstan
New Late Cretaceous mammals of southern Kazakhstan ALEXANDER 0. AVERIANOV Averianov, A.O. 1997. New Late Cretaceous mammals of southern Kazakhstan. -Acta Palaeontologica Polonica 42,2,243-256. Mammalian remains from the lower part of the Darbasa Formation (lower Campanian) at the 'Grey Mesa' locality in the Alymtau Range, southern Kazakhstan, are described. They include ?Bulganbaatar sp. (Multituberculata), Deltatheridiurn nessovi, sp. n. @el- tatheroida), and four eutherians: an undeterminated ?otlestid kemalestoid (?Otlestidae), ?Alymlestes sp. (Zalambdalestidae), ?Aspanlestes sp. (Zhelestidae), and an undetermi- nated eutherian. This new Cretaceous fauna is most similar to that from the Djadokhta Formation in Mongolia and may tentatively confirm an early Campanian age for the latter. Key w o r d s : Mammalia, Cretaceous, Kazakhstan, Mongolia. Alexander 0.Averianov [[email protected]. ru], Zoological Institute, Russian Academy of Sciences, Universitetskaya nab. 1, 199034 Saint Petersburg, Russia. Introduction Mesozoic mammals from Kazakhstan are poorly known. The first Mesozoic mammal from Kazakhstan (and the first from the former USSR), found in 1962, is a mandibular fragment with heavily damaged molars, the holotype of Beleutinus orl~vi(?Zalamb- dalestidae), from the Santonian Bostobe Formation at Zhalmauz Well, Kyzyl-Orda Region (Bazhanov 1972). Since that time only three additional mammal remains have been recognized from the Cretaceous of Kazakhstan: a cervical vertebra of a relatively large, undeterminated mammal from the Zhalmauz locality (Nessov & Khisarova 1988); a dentary fragment with p5, ml-3, the holotype of Sorlestes kara (Zhelestidae), from the drilling core penetrating lower Turonian deposits near Ashchikol' Lake, Chimkent Region (Nessov 1993); and a lower molar (ml), the holotype of Alymlestes kielanae (Zalambdalestidae) from the lower part (Campanian) of the Darbasa Forma- tion at the 'Grey Mesa' locality in the Alymtau Range, Chimkent Region (Averianov & Nessov 1995). -
Variacion Morfologica
DIVERSIDAD MORFOLÓGICA CRÁNEO-MANDIBULAR DE ROEDORES CAVIOMORFOS EN UN CONTEXTO FILOGENÉTICO COMPARATIVO LIC. ALICIA ÁLVAREZ Director Dr. Diego H. Verzi Codirector Dr. S. Ivan Perez Facultad de Ciencias Naturales y Museo, Universidad Nacional de La Plata 2012 Sección Mastozoología, División Zoología Vertebrados Museo de La Plata AGRADECIMIENTOS Quiero agradecer a mis directores, los Dres. Diego Verzi e Ivan Perez por haberme guiado durante el desarrollo de mi tesis. A Diego, por darme la oportunidad de introducirme en el mundo fascinante de los roedores caviomorfos y del estudio de la evolución morfológica. A Ivan por aceptar ser mi codirector y por haberme enseñado con tanta paciencia todo lo que sé en el vasto campo metodológico. Agradezco a los Dres. David Flores, Rolando González-José y Guiomar Vucetich por aceptar la actuación como jurados de esta tesis. Agradezco a la Decana de la Facultad de Ciencias Naturales y Museo, Dra. Alejandra Rumi Macchi Zubiaurre, a su predecesora, Dra. Evelia Oyhenart y al Dr. Hugo López por el lugar de trabajo dentro de la División Zoología de Vertebrados del Museo de La Plata. Agradezco a los curadores de las distintas colecciones que visité durante el transcurso de mi tesis. Al Dr. David Flores, muchas gracias por permitirme el acceso a la colección de Mastozoología del Museo Argentino de Ciencias Naturales “Bernardino Rivadavia” de la ciudad de Buenos Aires y por hacerme sentir como en casa cada vez que visito la colección del MACN. A la Dra. Olga Vaccaro, curadora de la colección durante la primera visita a una colección que realicé. A Damián Romero, del Museo de Ciencias Naturales de Mar de Plata “Lorenzo Scaglia”, por las innumerables veces que me permitió visitar esa colección a la que siempre es lindo volver, y por los incontables préstamos que me facilitó. -
Universidade Federal Do Ceará Centro De Ciências
UNIVERSIDADE FEDERAL DO CEARÁ CENTRO DE CIÊNCIAS DEPARTAMENTO DE BIOLOGIA CURSO DE CIÊNCIAS BIOLÓGICAS NÁDIA MARIA FREITAS EDUARDO ANÁLISE FUNCIONAL DO ESQUELETO APENDICULAR DE UM MARSUPIAL AUSTRALIANO DO MIOCENO FORTALEZA 2017 NÁDIA MARIA FREITAS EDUARDO ANÁLISE FUNCIONAL DO ESQUELETO APENDICULAR DE UM MARSUPIAL AUSTRALIANO DO MIOCENO Monografia apresentada ao Curso de Ciências Biológicas do Departamento de Biologia da Universidade Federal do Ceará, como requisito parcial para obtenção do Título de Bacharel em Ciências Biológicas. Orientador: Prof. Dr. Vicente Vieira Faria. Co-orientador: Dr. Michael Archer. FORTALEZA 2017 Aos meus pais, Eduardo e Kátia. Ao Grupo de Discussão sobre Mamíferos e Aves (GDMA) AGRADECIMENTOS À minha mãe, Kátia Freitas, por ter sido meu porto seguro, meu suporte e minha conselheira durante toda a graduação, desde a época do vestibular, passando pelo intercâmbio, até minha formatura. Ao meu pai, que mesmo falecido, sempre foi minha inspiração. À minha irmã, por sempre me apoiar e me provocar questionamentos. A os meus professores, colegas de graduação, colegas de trabalho e funcionários da UFC. Enfim, a todos aqueles que cruzaram meu caminho durante esses anos de graduação e, de alguma forma, colaboraram para minha formação profissional, pessoal e critica. À Pró Reitoria de Assuntos Estudantis, por ter me provido com uma vaga no programa de Residência Universitária, permitindo com que eu concluísse meus estudos em Fortaleza. Ao Grupo de Discussão sobre Mamíferos e Aves, que foi meu refúgio e principal fonte de conhecimento e discussão durante a graduação. A todos os laboratórios dos quais eu fiz parte. Em especial, durante minha Iniciação Científica no Laboratório de Histologia Animal, onde dei meus primeiros passos na pesquisa científica. -
Evolução De Especializações Locomotoras Em Roedores Sigmodontíneos/Ludmilla
Universidade Federal do Rio de Janeiro EVOLUÇÃO DE ESPECIALIZAÇÕES LOCOMOTORAS EM ROEDORES SIGMODONTÍNEOS LUDMILLA CARVALHO COUTINHO Rio de Janeiro 2017 ii EVOLUÇÃO DE ESPECIALIZAÇÕES LOCOMOTORAS EM ROEDORES SIGMODONTÍNEOS Ludmilla Carvalho Coutinho Tese apresentada ao Programa de Pós-Graduação em Ciências Biológicas (Biodiversidade e Biologia Evolutiva), da Universidade Federal do Rio de Janeiro, como parte dos requisitos necessários à obtenção do título de Doutor em Ciências Biológicas (Biodiversidade e Biologia Evolutiva) Orientador: João Alves de Oliveira Banca examinadora: ______________________ (Presidente) Prof. Dr. Carlos Eduardo Guerra Schrago _______________________ Prof. Dr. Marcelo Weksler _______________________ Prof. Dr. Marcus Vinícius Vieira _______________________ Prof. Dr. Ricardo Tadeu Santori _______________________ Prof. Dr. William Corrêa Tavares Rio de Janeiro Agosto 2017 Instituto de Biologia Universidade Federal do Rio de Janeiro iii COUTINHO, Ludmilla Carvalho. Evolução de especializações locomotoras em roedores sigmodontíneos/Ludmilla Carvalho Coutinho. Rio de Janeiro: UFRJ, 2017. xv, 198 páginas. f, Il; 29,7 cm Orientador: Prof. Dr. João Alves de Oliveira Doutorado. UFRJ/ Programa de Pós-Graduação em Ciências Biológicas (Biodiversidade e Biologia Evolutiva), 2017. Referências bibliográficas: f. 71-92. 1. Especialização locomotora. 2. Esqueleto apendicular. I. Oliveira, João Alves II. UFRJ/ MN; Programa de Pós-Graduação em Ciências Biológicas (Zoologia). III. Evolução de especializações locomotoras em roedores sigmodontíneos. iv “…species of the same genus have usually, though by no means invariably, some similarity in habits and constitution…” Darwin 1859, p. 76. v AGRADECIMENTOS Ao Dr. João Alves de Oliveira, orientador que me guiou nessa jornada. Agradeço pelo apoio, dedicação e pelo enorme aprendizado que me proporcionou. Aos coletores dos exemplares analisados nesse estudo, por terem tornado o meu trabalho possível.