Spatial and Temporal Distribution of Some Commercially Important Fish Species in the South East and South West Arms of Lake
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Identification and Biology of Diplotaxodon, Rhamphochromis and Pallidochromis
190 Diplotaxodon, Rhamphochromis & Pallidochromis / Turner et al. Identification and Biology of Diplotaxodon, Rhamphochromis and Pallidochromis George F. Turner, Rosanna L. Robinson, Paul W. Shaw & Gary R. Carvalho Abstract Introduction We present preliminary morphological and mo- The genera Rhamphochromis Regan, 1922 and lecular taxonomic studies of the genera Rhampho- Diplotaxodon Trewavas, 1935 include the most chromis, Diplotaxodon and Pallidochromis, along with pelagic of Lake Malawi’s cichlids (Turner, 1996). notes on their identification, distribution and ecol- Pallidochromis Turner, 1994, a more benthic form, is ogy. We suggest that Rhamphochromis is comprised also considered in this chapter, as it appears mor- of eight to ten species: R. longiceps, R. woodi, R. phologically intermediate between Diplotaxodon macrophthalmus, R. esox, possibly R. ferox and four and Rhamphochromis (Turner 1994a). Rhampho- or five undescribed species. We suggest that R. chromis species are streamlined elongated predators lucius and R. brevis may be junior synonyms of R. of fish and zooplankton. They usually have large woodi. We also believe that Rhamphochromis teeth and jaws. Diplotaxodon comprises a heteroge- leptosoma and R. melanotus are junior synonyms of neous mix of small-toothed silvery species with R. esox. We consider that the two types of R. ferox upwardly-angled jaws. The genus includes zoo- are not conspecific and we designate a lectotype. planktivores and predators of small pelagic fish. However, we have not yet been able to positively The genus Rhamphochromis was described by identify this species from recent collections. Regan (1922), who took the type species as Diplotaxodon may contain anything from 11 to 22 or Rhamphochromis longiceps (Günther, 1864). -
View/Download
CICHLIFORMES: Cichlidae (part 2) · 1 The ETYFish Project © Christopher Scharpf and Kenneth J. Lazara COMMENTS: v. 4.0 - 30 April 2021 Order CICHLIFORMES (part 2 of 8) Family CICHLIDAE Cichlids (part 2 of 7) Subfamily Pseudocrenilabrinae African Cichlids (Abactochromis through Greenwoodochromis) Abactochromis Oliver & Arnegard 2010 abactus, driven away, banished or expelled, referring to both the solitary, wandering and apparently non-territorial habits of living individuals, and to the authors’ removal of its one species from Melanochromis, the genus in which it was originally described, where it mistakenly remained for 75 years; chromis, a name dating to Aristotle, possibly derived from chroemo (to neigh), referring to a drum (Sciaenidae) and its ability to make noise, later expanded to embrace cichlids, damselfishes, dottybacks and wrasses (all perch-like fishes once thought to be related), often used in the names of African cichlid genera following Chromis (now Oreochromis) mossambicus Peters 1852 Abactochromis labrosus (Trewavas 1935) thick-lipped, referring to lips produced into pointed lobes Allochromis Greenwood 1980 allos, different or strange, referring to unusual tooth shape and dental pattern, and to its lepidophagous habits; chromis, a name dating to Aristotle, possibly derived from chroemo (to neigh), referring to a drum (Sciaenidae) and its ability to make noise, later expanded to embrace cichlids, damselfishes, dottybacks and wrasses (all perch-like fishes once thought to be related), often used in the names of African cichlid genera following Chromis (now Oreochromis) mossambicus Peters 1852 Allochromis welcommei (Greenwood 1966) in honor of Robin Welcomme, fisheries biologist, East African Freshwater Fisheries Research Organization (Jinja, Uganda), who collected type and supplied ecological and other data Alticorpus Stauffer & McKaye 1988 altus, deep; corpus, body, referring to relatively deep body of all species Alticorpus geoffreyi Snoeks & Walapa 2004 in honor of British carcinologist, ecologist and ichthyologist Geoffrey Fryer (b. -
Behavioral Evolution Contributes to Hindbrain Diversification Among Lake Malawi Cichlid Fish
www.nature.com/scientificreports OPEN Behavioral evolution contributes to hindbrain diversifcation among Lake Malawi cichlid fsh Ryan A. York1,2*, Allie Byrne1, Kawther Abdilleh3, Chinar Patil3, Todd Streelman3, Thomas E. Finger4,5 & Russell D. Fernald1,6 The evolutionary diversifcation of animal behavior is often associated with changes in the structure and function of nervous systems. Such evolutionary changes arise either through alterations of individual neural components (“mosaically”) or through scaling of the whole brain (“concertedly”). Here we show that the evolution of a courtship behavior in Malawi cichlid fsh is associated with rapid, extensive, and specifc diversifcation of orosensory, gustatory centers in the hindbrain. We fnd that hindbrain volume varies signifcantly between species that build pit (depression) compared to castle (mound) type bowers and that this trait is evolving rapidly among castle-building species. Molecular analyses of neural activity via immediate early gene expression indicate a functional role for hindbrain structures during bower building. Finally, comparisons of bower building species in neighboring Lake Tanganyika suggest parallel patterns of neural diversifcation to those in Lake Malawi. Our results suggest that mosaic brain evolution via alterations to individual brain structures is more extensive and predictable than previously appreciated. Animal behaviors vary widely, as do their neural phenotypes1. Evolutionary neuroscience identifes how the brain diversifes over time and space in response to selective pressures2. A key goal of evolutionary neuroscience has been to identify whether brain structures evolve independently (“mosaically”) or in tandem with each other as they refect key life history traits, especially behavior3–6. While a number of studies have linked variation in brain structure with other traits across evolutionary time2,7–9, it remains unclear whether or not this variation is predict- able. -
Whole-Genome Sequences of Malawi Cichlids Reveal Multiple Radiations Interconnected by Gene Flow
ARTICLES https://doi.org/10.1038/s41559-018-0717-x Whole-genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow Milan Malinsky 1,2,10*, Hannes Svardal 1,3,4,5,10, Alexandra M. Tyers6,9, Eric A. Miska 1,3,7, Martin J. Genner8, George F. Turner6 and Richard Durbin 1,3* The hundreds of cichlid fish species in Lake Malawi constitute the most extensive recent vertebrate adaptive radiation. Here we characterize its genomic diversity by sequencing 134 individuals covering 73 species across all major lineages. The aver- age sequence divergence between species pairs is only 0.1–0.25%. These divergence values overlap diversity within species, with 82% of heterozygosity shared between species. Phylogenetic analyses suggest that diversification initially proceeded by serial branching from a generalist Astatotilapia-like ancestor. However, no single species tree adequately represents all species relationships, with evidence for substantial gene flow at multiple times. Common signatures of selection on visual and oxygen transport genes shared by distantly related deep-water species point to both adaptive introgression and independent selec- tion. These findings enhance our understanding of genomic processes underlying rapid species diversification, and provide a platform for future genetic analysis of the Malawi radiation. he formation of every lake or island represents a fresh oppor- The species that comprise the radiation can be divided into seven tunity for colonization, proliferation and diversification of groups with differing ecology and morphology (see Supplementary Tliving forms. In some cases, the ecological opportunities pre- Note): (1) the rock-dwelling ‘mbuna’; (2) Rhamphochromis—typi- sented by underutilized habitats facilitate adaptive radiation—rapid cally midwater pelagic piscivores; (3) Diplotaxodon—typically deep- and extensive diversification of the descendants of the colonizing water pelagic zooplanktivores and piscivores; (4) deep-water and lineages1–3. -
Bayesian Node Dating Based on Probabilities of Fossil Sampling Supports Trans-Atlantic Dispersal of Cichlid Fishes
Supporting Information Bayesian Node Dating based on Probabilities of Fossil Sampling Supports Trans-Atlantic Dispersal of Cichlid Fishes Michael Matschiner,1,2y Zuzana Musilov´a,2,3 Julia M. I. Barth,1 Zuzana Starostov´a,3 Walter Salzburger,1,2 Mike Steel,4 and Remco Bouckaert5,6y Addresses: 1Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway 2Zoological Institute, University of Basel, Basel, Switzerland 3Department of Zoology, Faculty of Science, Charles University in Prague, Prague, Czech Republic 4Department of Mathematics and Statistics, University of Canterbury, Christchurch, New Zealand 5Department of Computer Science, University of Auckland, Auckland, New Zealand 6Computational Evolution Group, University of Auckland, Auckland, New Zealand yCorresponding author: E-mail: [email protected], [email protected] 1 Supplementary Text 1 1 Supplementary Text Supplementary Text S1: Sequencing protocols. Mitochondrial genomes of 26 cichlid species were amplified by long-range PCR followed by the 454 pyrosequencing on a GS Roche Junior platform. The primers for long-range PCR were designed specifically in the mitogenomic regions with low interspecific variability. The whole mitogenome of most species was amplified as three fragments using the following primer sets: for the region between position 2 500 bp and 7 300 bp (of mitogenome starting with tRNA-Phe), we used forward primers ZM2500F (5'-ACG ACC TCG ATG TTG GAT CAG GAC ATC C-3'), L2508KAW (Kawaguchi et al. 2001) or S-LA-16SF (Miya & Nishida 2000) and reverse primer ZM7350R (5'-TTA AGG CGT GGT CGT GGA AGT GAA GAA G-3'). The region between 7 300 bp and 12 300 bp was amplified using primers ZM7300F (5'-GCA CAT CCC TCC CAA CTA GGW TTT CAA GAT GC-3') and ZM12300R (5'-TTG CAC CAA GAG TTT TTG GTT CCT AAG ACC-3'). -
Les Poissons Des Eaux Continentales Africaines
ÉDITEURS SCIENTIFIQUES : CHRISTIAN LÉVÊQUE ET DIDIER PAUGY AUGY P Les poissons constituent à la fois un héritage de l’évolution particu- IDIER D lièrement menacé par les activités humaines et un ensemble de Les poissons des eaux ressources biologiques à ish are both an evolutio- F ÉVÊQUE ET préserver sur le long terme. nary heritage particularly strongly L L’adoption de la Convention sur la threatened by human activities and a set of bio- continentales africaines diversité biologique marque l’attention HRISTIAN nouvelle portée à la conservation des logical resources that : C espèces et des milieux naturels. should be conserved Diversité, Même si elle n’a pas toujours l’au- on a long-term basis. écologie, dience médiatique qu’elle mérite, la The adoption of the International situation des eaux continentales est souvent Convention on Biodiversity shows the utilisation par l’homme préoccupante. La conservation de la biodiver- new attention paid to the conservation of sité aquatique nécessite donc des mesures species and natural environments. Although DITEURS SCIENTIFIQUES d’urgence un peu partout dans le monde. it may not always receive the media atten- É Longtemps épargné, le continent africain est tion that it deserves, the situation of conti- à son tour menacé par les activités humaines nental waters is often worrying. The conser- (industrie, urbanisation, développement agri- vation of aquatic biodiversity requires emer- cole…). gency measures practically everywhere in La bonne gestion des eaux continentales est the world. Africa was long sheltered from the un véritable enjeu économique pour les pays problem but is now endangered by human d’Afrique. -
Summary of Characteristics of Major African Lakes
Appendix Summary of characteristics of major African lakes Nineteen lakes are included, giving details of location, depth and area, conductivity, pH, primary production, fish fauna, main commercial species status of introductions and, where available, approximate yield figures and the main ecological considerations. Values are taken from Vanden Bossche and Bernacsek (1990,1991), Craig (1992) and relevant chapters ofthis book. The Impact of Species Changes in African Lakes. Edited by Tony J. Pitcher and Paul J.B. Hart. Published in 1995 by Chapman & Hall. London. ISBN 0 412 550504. 548 Appendix: Summary of characteristics of major African lakes LAKE ALBERT (MOBUTU) Natural lake, Zaire and Uganda, 01 °50'N. 300 40'E (location map. Fig. 5.1) Western Rift Physical data Area Volume Depth (m) Drawdown Outflow/ (km2 ) (km3 ) (m) vol. ratio Mean Max. Secchi 6800 140 25 58 2.0-6.0 pH Conductivity Primary productivity Temp. (Ilmho cm-1 CC) at 20°C) gCm-2 day-1 8.9-9.5 730 0.8 - 3.8 Other physical information Stratified. Fish Total no. Total no. Non-cichlids· Cichlids· families species Genera Species Genera Species 14 46 26 (0) 37 (2) 2 (0) 9 (4) Introductions None. Main commercial species Alestes (A. baremose). Hydrocynus. Lates (1. macrophthalmus - lives offshore). Bagrus. Oreochromis niloticus. O. leucostictus. Sarotherodon galiIaeus. TiIapia zilIii and Citharinus citharus. Fishing gears used Gill nets. beach seines. longlines. rod and line. Total landings 12 548 tyear-1 in 1963. 12 532 tyear-1 in 1988. Fish production 125 kg ha -1 (1.3 gC m -2 year-1). Ecological considerations Fish species are similar to riverine Nile fish. -
Food Partitioning Within the Species-Rich Benthic Fish Community of Lake Malawi, East Africa
1651 Food partitioning within the species-rich benthic fish community of Lake Malawi, East Africa F. Duponchelle, A.J. Ribbink, A. Msukwa, J. Mafuka, D. Mandere, and H. Bootsma Abstract: Temporal diet patterns were studied for nine species of haplochromine cichlids in Lake Malawi, East Africa, using a combination of stable isotope and stomach content analyses. The results illustrate the complementarity of the two approaches in elucidating dietary differences. Evidence was found that benthic algal production contributed to the energy requirements of offshore fishes that occupy depths between 10 and 30 m. The importance of the lake fly Chaoborus edulis as a food source for demersal fishes was confirmed, supporting the recent hypothesis that deep demersal fish production is principally sustained through the pelagic food chain rather than from benthic detrital sources. Isotopic differences were observed among species with apparently similar diets, feeding behavior, and depth preferences, suggesting that important resource partitioning exists among Lake Malawi benthic haplochromine cichlids. Résumé : Les variations temporelles de régime alimentaire de neuf espèces de cichlidés haplochromis du lac Malawi (Afrique de l’est) ont été étudiées grâce à l’utilisation combinée des contenus stomacaux et des analyses d’isotopes sta- bles. Les résultats illustrent la complémentarité des deux approches pour élucider les différences d’alimentation entre espèces proches. Cette étude a mis en évidence la contribution de la production algale benthique aux besoins alimentai- res des poissons entre 10 et 30 m de profondeur. L’importance de Chaoborus edulis comme source alimentaire pour les espèces démersales a été confirmée, ce qui renforce l’hypothèse récente selon laquelle la production de poissons dé- mersaux repose principalement sur une chaîne alimentaire de type pélagique et non pas sur des sources de détritus ben- thiques. -
Evolution of Bower Building in Lake Malawi Cichlid Fish
ORIGINAL RESEARCH ARTICLE published: 18 March 2015 ECOLOGY AND EVOLUTION doi: 10.3389/fevo.2015.00018 Evolution of bower building in Lake Malawi cichlid fish: phylogeny, morphology, and behavior Ryan A. York 1*, Chinar Patil 2,C.DarrinHulsey3, Onyemaechi Anoruo 1, J. Todd Streelman 2* and Russell D. Fernald 1 1 Department of Biology, Stanford University, Stanford, CA, USA 2 School of Biology, Georgia Institute of Technology, Atlanta, GA, USA 3 Department of Ecology and Evolution, University of Tennessee Knoxville, Knoxville, TN, USA Edited by: Despite considerable research, we still know little about the proximate and ultimate causes Devi Meian Stuart-Fox, University of behind behavioral evolution. This is partly because understanding the forces acting on Melbourne, Australia behavioral phenotypes requires the study of species-rich clades with extensive variation Reviewed by: in behavioral traits, of which we have few current examples. In this paper, we introduce Carmelo Fruciano, University of Konstanz, Germany the bower-building cichlids of the Lake Malawi adaptive radiation, a lineage with over 100 Topi K. Lehtonen, University of species, each possessing a distinct male extended phenotype used to signal reproductive Turku, Finland fitness. Extended phenotypes are useful units of analysis for the study of behavior since *Correspondence: they are static structures that can be precisely measured within populations. To this end Ryan A. York, Department of we recognize two core types of bowers - mounds (“castles”) and depressions (“pits”). Biology, Stanford University, 371 Serra Mall, Stanford, CA 94305, USA We employ an established framework for the study of adaptive radiations to ask how traits e-mail: [email protected]; related to other stages of radiations, macrohabitat and feeding morphology, are associated J. -
Whole Genome Sequences of Malawi Cichlids Reveal Multiple Radiations Interconnected by Gene Flow Authors: Milan Malinsky1,2†*, Hannes Svardal1†, Alexandra M
bioRxiv preprint doi: https://doi.org/10.1101/143859; this version posted July 7, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Title: Whole genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow Authors: Milan Malinsky1,2†*, Hannes Svardal1†, Alexandra M. Tyers4, Eric A. Miska1,3, Martin J. Genner5, George F. Turner4, and Richard Durbin1* Affiliations: 1Wellcome Trust Sanger Institute, Cambridge, CB10 1SA, UK. 2Zoological Institute, University of Basel, 4051 Basel, Switzerland. 3School of Biological Sciences, Bangor University, Bangor, Gwynedd LL57 2UW, UK. 4Gurdon Institute and Department of Genetics, University of Cambridge, Cambridge, CB2 1QN, UK. 5School of Biological Sciences, Life Sciences Building, 24 Tyndall Avenue, University of Bristol, Bristol BS8 1TQ, UK. *Correspondence to: [email protected] (MM), [email protected] (RD). †These autHors contributed equally to tHis work. Abstract: The hundreds of cichlid fish species in Lake Malawi constitute the most extensive recent vertebrate adaptive radiation. Here we characterize its genomic diversity by sequencing 134 individuals covering 73 species across all major lineages. Average sequence divergence between species pairs is only 0.1-0.25%. These divergence values overlap diversity within species, with 82% of heterozygosity shared between species. Phylogenetic analyses suggest that diversification initially proceeded by serial branching from a generalist Astatotilapia-like ancestor. However, no single species tree adequately represents all species relationships, with evidence for substantial gene flow at multiple times. -
Extensive Introgression Among Ancestral Mtdna Lineages: Phylogenetic Relationships of the Utaka Within the Lake Malawi Cichlid Flock
Hindawi Publishing Corporation International Journal of Evolutionary Biology Volume 2012, Article ID 865603, 9 pages doi:10.1155/2012/865603 Research Article Extensive Introgression among Ancestral mtDNA Lineages: Phylogenetic Relationships of the Utaka within the Lake Malawi Cichlid Flock Dieter Anseeuw,1, 2 Bruno Nevado,3, 4 Paul Busselen,1 Jos Snoeks,5, 6 and Erik Verheyen3, 4 1 Interdisciplinary Research Centre, K. U. Leuven Campus Kortrijk, Etienne Sabbelaan 53, 8500 Kortrijk, Belgium 2 KATHO, Wilgenstraat 32, 8800 Roeselare, Belgium 3 Vertebrate Department, Royal Belgian Institute of Natural Sciences, Vautierstraat 29, 1000 Brussels, Belgium 4 Evolutionary Ecology Group, University of Antwerp, Middelheimcampus G.V. 332, Groenenborgerlaan 171, 2020 Antwerp, Belgium 5 Zoology Department, Royal Museum for Central Africa, Leuvensesteenweg 13, 3080 Tervuren, Belgium 6 Laboratory of Biodiversity and Evolutionary Genomics, K. U. Leuven, Charles Deberiotstraat 32, 3000 Leuven, Belgium Correspondence should be addressed to Dieter Anseeuw, [email protected] Received 4 January 2012; Accepted 27 February 2012 Academic Editor: Stephan Koblmuller¨ Copyright © 2012 Dieter Anseeuw et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. We present a comprehensive phylogenetic analysis of the Utaka, an informal taxonomic group of cichlid species from Lake Malawi. We analyse both nuclear and mtDNA data from five Utaka species representing two (Copadichromis and Mchenga) of the three genera within Utaka. Within three of the five analysed species we find two very divergent mtDNA lineages. These lineages are widespread and occur sympatrically in conspecific individuals in different areas throughout the lake. -
Genome-Enabled Discovery of Evolutionary Divergence in Brains
www.nature.com/scientificreports OPEN Genome‑enabled discovery of evolutionary divergence in brains and behavior Chinar Patil1*, Jonathan B. Sylvester1,2, Kawther Abdilleh1, Michael W. Norsworthy3,4, Karen Pottin5, Milan Malinsky6,7, Ryan F. Bloomquist1,8, Zachary V. Johnson1, Patrick T. McGrath1 & Jefrey T. Streelman1 Lake Malawi cichlid fshes exhibit extensive divergence in form and function built from a relatively small number of genetic changes. We compared the genomes of rock‑ and sand‑dwelling species and asked which genetic variants difered among the groups. We found that 96% of diferentiated variants reside in non‑coding sequence but these non‑coding diverged variants are evolutionarily conserved. Genome regions near diferentiated variants are enriched for craniofacial, neural and behavioral categories. Following leads from genome sequence, we used rock‑ vs. sand‑species and their hybrids to (i) delineate the push–pull roles of BMP signaling and irx1b in the specifcation of forebrain territories during gastrulation and (ii) reveal striking context‑dependent brain gene expression during adult social behavior. Our results demonstrate how divergent genome sequences can predict diferences in key evolutionary traits. We highlight the promise of evolutionary reverse genetics—the inference of phenotypic divergence from unbiased genome sequencing and then empirical validation in natural populations. Our understanding of how the genome encodes natural variation in form and function is still limited. Tis is the case for almost any trait, from height to behavior to complex disease1. Te reasons for this are manifold, but they include an underappreciated role of non-coding genetic variants linked to diferences in traits. Tis is apparent in our assumptions and in syntheses of data.