The Phylogenetic Position of Rhopalostroma As Inferred from a Polythetic Approach
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Phylogenetic Assignment of the Fungicolous Hypoxylon Invadens (Ascomycota, Xylariales) and Investigation of Its Secondary Metabolites
microorganisms Article Phylogenetic Assignment of the Fungicolous Hypoxylon invadens (Ascomycota, Xylariales) and Investigation of its Secondary Metabolites Kevin Becker 1,2 , Christopher Lambert 1,2,3 , Jörg Wieschhaus 1 and Marc Stadler 1,2,* 1 Department of Microbial Drugs, Helmholtz Centre for Infection Research GmbH (HZI), Inhoffenstraße 7, 38124 Braunschweig, Germany; [email protected] (K.B.); [email protected] (C.L.); [email protected] (J.W.) 2 German Centre for Infection Research Association (DZIF), Partner site Hannover-Braunschweig, Inhoffenstraße 7, 38124 Braunschweig, Germany 3 Department for Molecular Cell Biology, Helmholtz Centre for Infection Research GmbH (HZI) Inhoffenstraße 7, 38124 Braunschweig, Germany * Correspondence: [email protected]; Tel.: +49-531-6181-4240; Fax: +49-531-6181-9499 Received: 23 July 2020; Accepted: 8 September 2020; Published: 11 September 2020 Abstract: The ascomycete Hypoxylon invadens was described in 2014 as a fungicolous species growing on a member of its own genus, H. fragiforme, which is considered a rare lifestyle in the Hypoxylaceae. This renders H. invadens an interesting target in our efforts to find new bioactive secondary metabolites from members of the Xylariales. So far, only volatile organic compounds have been reported from H. invadens, but no investigation of non-volatile compounds had been conducted. Furthermore, a phylogenetic assignment following recent trends in fungal taxonomy via a multiple sequence alignment seemed practical. A culture of H. invadens was thus subjected to submerged cultivation to investigate the produced secondary metabolites, followed by isolation via preparative chromatography and subsequent structure elucidation by means of nuclear magnetic resonance (NMR) spectroscopy and high-resolution mass spectrometry (HR-MS). -
Resurrection and Emendation of the Hypoxylaceae, Recognised from a Multigene Phylogeny of the Xylariales
Mycol Progress DOI 10.1007/s11557-017-1311-3 ORIGINAL ARTICLE Resurrection and emendation of the Hypoxylaceae, recognised from a multigene phylogeny of the Xylariales Lucile Wendt1,2 & Esteban Benjamin Sir3 & Eric Kuhnert1,2 & Simone Heitkämper1,2 & Christopher Lambert1,2 & Adriana I. Hladki3 & Andrea I. Romero4,5 & J. Jennifer Luangsa-ard6 & Prasert Srikitikulchai6 & Derek Peršoh7 & Marc Stadler1,2 Received: 21 February 2017 /Revised: 12 April 2017 /Accepted: 19 April 2017 # The Author(s) 2017. This article is an open access publication Abstract A multigene phylogeny was constructed, including polymerase II (RPB2), and beta-tubulin (TUB2). Specimens a significant number of representative species of the main were selected based on more than a decade of intensive mor- lineages in the Xylariaceae and four DNA loci the internal phological and chemotaxonomic work, and cautious taxon transcribed spacer region (ITS), the large subunit (LSU) of sampling was performed to cover the major lineages of the the nuclear rDNA, the second largest subunit of the RNA Xylariaceae; however, with emphasis on hypoxyloid species. The comprehensive phylogenetic analysis revealed a clear-cut This article is part of the “Special Issue on ascomycete systematics in segregation of the Xylariaceae into several major clades, honor of Richard P. Korf who died in August 2016”. which was well in accordance with previously established morphological and chemotaxonomic concepts. One of these The present paper is dedicated to Prof. Jack D. Rogers, on the occasion of his fortcoming 80th birthday. clades contained Annulohypoxylon, Hypoxylon, Daldinia,and other related genera that have stromatal pigments and a Section Editor: Teresa Iturriaga and Marc Stadler nodulisporium-like anamorph. -
The Phylogenetic Position of Rhopalostroma As Inferred from a Polythetic Approach
Persoonia 25, 2010: 11–21 www.persoonia.org RESEARCH ARTICLE doi:10.3767/003158510X524231 The phylogenetic position of Rhopalostroma as inferred from a polythetic approach M. Stadler1, J. Fournier2, S. Gardt3, D. Peršoh3 Key words Abstract The xylariaceous genus Rhopalostroma comprises a small conglomerate of stromatic, angiosperm- associated pyrenomycetes, which have so far exclusively been reported from the palaeotropics, above all from Ascomycota tropical Africa and South Asia. Morphological and chemotaxonomic studies had suggested their close relationship chemosystematics to the genera Daldinia and Hypoxylon. However, those results were mainly based on herbarium specimens, and extrolites no molecular phylogenetic data were available on Rhopalostroma. During a foray in Côte d’Ivoire, fresh material of fungi R. angolense was collected, cultured and studied by microscopic methods and by secondary metabolite profiling Rhopalostroma using high performance liquid chromatography coupled with diode array and mass spectrometric detection. In ad- Xylariales dition, ITS nrDNA sequences of the cultures were generated and compared to those of representative Xylariaceae taxa, to evaluate the phylogenetic affinities of this fungus. The results showed that R. angolense is closely related to the daldinoid Xylariaceae, and in particular to the predominantly neotropical genera Phylacia and Thamnomyces. Article info Received: 22 March 2010; Accepted: 29 June 2010; Published: 27 July 2010. INTRODUCTION molecular phylogenetic data (Bitzer et al. 2008, Stadler et al. 2010b). Ruwenzoria, a recently described tropical xylariaceous The genus Rhopalostroma was erected by Hawksworth (1977) genus (Stadler et al. 2010a), also features early deliquescent to accommodate a series of palaeotropical pyrenomycetes that asci that are devoid of an amyloid apical apparatus. -
The Phylogenetic Position of <I>Rhopalostroma</I>
Persoonia 25, 2010: 11–21 www.persoonia.org RESEARCH ARTICLE doi:10.3767/003158510X524231 The phylogenetic position of Rhopalostroma as inferred from a polythetic approach M. Stadler1, J. Fournier2, S. Gardt3, D. Peršoh3 Key words Abstract The xylariaceous genus Rhopalostroma comprises a small conglomerate of stromatic, angiosperm- associated pyrenomycetes, which have so far exclusively been reported from the palaeotropics, above all from Ascomycota tropical Africa and South Asia. Morphological and chemotaxonomic studies had suggested their close relationship chemosystematics to the genera Daldinia and Hypoxylon. However, those results were mainly based on herbarium specimens, and extrolites no molecular phylogenetic data were available on Rhopalostroma. During a foray in Côte d’Ivoire, fresh material of fungi R. angolense was collected, cultured and studied by microscopic methods and by secondary metabolite profiling Rhopalostroma using high performance liquid chromatography coupled with diode array and mass spectrometric detection. In ad- Xylariales dition, ITS nrDNA sequences of the cultures were generated and compared to those of representative Xylariaceae taxa, to evaluate the phylogenetic affinities of this fungus. The results showed that R. angolense is closely related to the daldinoid Xylariaceae, and in particular to the predominantly neotropical genera Phylacia and Thamnomyces. Article info Received: 22 March 2010; Accepted: 29 June 2010; Published: 27 July 2010. INTRODUCTION molecular phylogenetic data (Bitzer et al. 2008, Stadler et al. 2010b). Ruwenzoria, a recently described tropical xylariaceous The genus Rhopalostroma was erected by Hawksworth (1977) genus (Stadler et al. 2010a), also features early deliquescent to accommodate a series of palaeotropical pyrenomycetes that asci that are devoid of an amyloid apical apparatus. -
Manaus, BRAZIL Macrofungi of the Adolpho Ducke Botanical Garden
Manaus, BRAZIL Macrofungi of the Adolpho Ducke Botanical Garden 1 Douglas de Moraes Couceiro, Kely da Silva Cruz, Maria Aparecida da Silva & Maria Aparecida de Jesus Instituto Nacional de Pesquisas da Amazônia, Coordenação de Tecnologia e Inovação, Manaus - AM Photos by Douglas de Moraes Couceiro, Kely da Silva Cruz, Maria Aparecida da Silva, and Maria Aparecida de Jesus, except where indicated. Produced by: Douglas de Moraes Couceiro with support from the Laboratory of Wood Pathology. Abbreviations: Ascomycota (A), Basidiomycota (B), Pileus (P), Hymenophore (H) © Douglas Couceiro [[email protected]] [fieldguides.fieldmuseum.org] [929] version 1 9/2017 1 Auricularia delicata 2 Camillea leprieurii 3 Camillea leprieurii 4 Caripia montagnei Auriculariales, Auriculariaceae (B) Xylariales, Xylariaceae (A) Xylariales, Xylariaceae (A) Agaricales, Omphalotaceae (B) 5 Clavaria zollingeri 6 Cookeina tricholoma 7 Crepidotus cf. variabilis 8 Dacryopinax spathularia Agaricales, Clavariaceae (B) Pezizales, Sarcoscyphaceae (A) Agaricales, Inocybaceae (B) Dacrymycetales, Dacrymycetaceae (B) 9 Daldinia concentrica 10 Favolus tenuiculus 11 Favolus tenuiculus 12 Flabellophora obovata Xylariales, Xylariaceae (A) Polyporales, Polyporaceae (B, P) Polyporales, Polyporaceae (B, H) Polyporales, Polyporaceae (B) 13 Flavodon flavus 14 Fomes fasciatus 15 Fomes fasciatus 16 Ganoderma applanatum Polyporales, Meruliaceae (B, H) Polyporales, Polyporaceae (B, P) Polyporales, Polyporaceae (B, H) Polyporales, Ganodermataceae (B, P) 17 Ganoderma applanatum 18 Geastrum -
UC Riverside UC Riverside Previously Published Works
UC Riverside UC Riverside Previously Published Works Title Contributions of North American endophytes to the phylogeny, ecology, and taxonomy of Xylariaceae (Sordariomycetes, Ascomycota). Permalink https://escholarship.org/uc/item/3fm155t1 Authors U'Ren, Jana M Miadlikowska, Jolanta Zimmerman, Naupaka B et al. Publication Date 2016-05-01 DOI 10.1016/j.ympev.2016.02.010 License https://creativecommons.org/licenses/by-nc-nd/4.0/ 4.0 Peer reviewed eScholarship.org Powered by the California Digital Library University of California *Graphical Abstract (for review) ! *Highlights (for review) • Endophytes illuminate Xylariaceae circumscription and phylogenetic structure. • Endophytes occur in lineages previously not known for endophytism. • Boreal and temperate lichens and non-flowering plants commonly host Xylariaceae. • Many have endophytic and saprotrophic life stages and are widespread generalists. *Manuscript Click here to view linked References 1 Contributions of North American endophytes to the phylogeny, 2 ecology, and taxonomy of Xylariaceae (Sordariomycetes, 3 Ascomycota) 4 5 6 Jana M. U’Ren a,* Jolanta Miadlikowska b, Naupaka B. Zimmerman a, François Lutzoni b, Jason 7 E. Stajichc, and A. Elizabeth Arnold a,d 8 9 10 a University of Arizona, School of Plant Sciences, 1140 E. South Campus Dr., Forbes 303, 11 Tucson, AZ 85721, USA 12 b Duke University, Department of Biology, Durham, NC 27708-0338, USA 13 c University of California-Riverside, Department of Plant Pathology and Microbiology and Institute 14 for Integrated Genome Biology, 900 University Ave., Riverside, CA 92521, USA 15 d University of Arizona, Department of Ecology and Evolutionary Biology, 1041 E. Lowell St., 16 BioSciences West 310, Tucson, AZ 85721, USA 17 18 19 20 21 22 23 24 * Corresponding author: University of Arizona, School of Plant Sciences, 1140 E. -
AR TICLE Recommendations for Competing Sexual-Asexually Typified
IMA FUNGUS · 7(1): 131–153 (2016) doi:10.5598/imafungus.2016.07.01.08 Recommendations for competing sexual-asexually typified generic names in ARTICLE Sordariomycetes (except Diaporthales, Hypocreales, and Magnaporthales) Martina Réblová1, Andrew N. Miller2, Amy Y. Rossman3*, Keith A. Seifert4, Pedro W. Crous5, David L. Hawksworth6,7,8, Mohamed A. Abdel-Wahab9, Paul F. Cannon8, Dinushani A. Daranagama10, Z. Wilhelm De Beer11, Shi-Ke Huang10, Kevin D. Hyde10, Ruvvishika Jayawardena10, Walter Jaklitsch12,13, E. B. Gareth Jones14, Yu-Ming Ju15, Caroline Judith16, Sajeewa S. N. Maharachchikumbura17, Ka-Lai Pang18, Liliane E. Petrini19, Huzefa A. Raja20, Andrea I Romero21, Carol Shearer2, Indunil C. Senanayake10, Hermann Voglmayr13, Bevan S. Weir22, and Nalin N. Wijayawarden10 1Department of Taxonomy, Institute of Botany of the Academy of Sciences of the Czech Republic, Průhonice 252 43, Czech Republic 2Illinois Natural History Survey, University of Illinois, Champaign, Illinois 61820, USA 3Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331, USA; *corresponding author e-mail: amydianer@ yahoo.com 4Ottawa Research and Development Centre, Biodiversity (Mycology and Microbiology), Agriculture and Agri-Food Canada, 960 Carling Avenue, Ottawa, Ontario K1A 0C6 Canada 5CBS-KNAW Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands 6Departamento de Biología Vegetal II, Facultad de Farmacia, Universidad Complutense, Plaza de Ramón y Cajal s/n, Madrid 28040, Spain 7Department of Life Sciences, -
Interesting Or Rare Xylariaceae from Thailand
Rajabhat J. Sci. Humanit . Soc. Sci. 13(1) 9 -19 Interesting or rare Xylariaceae from Thailand Anthony JS Whalley 1*, Cherdchai Phosri 2, Nutthaporn Ruchikachorn 3, Prakitsin Sihanonth 4, Ek Sangvichien 5, Nuttika Suwannasai 6, Surang Thienhirun 7 and Margaret Whalley 1 1School of Pharmacy and Biomolecular Sciences, Liverpool John Moores University, Liverpool, UK 2Faculty of Science & Technology, Pibulsongkram Rajabhat University, Phitsanulok, Thailand 3Plant Genetic Conservation Project Office, the Royal Chitralada Palace, Dusit, Bangkok, Thailand 4 Department of Microbiology, Faculty of Science, Chulalongkorn University, Bangkok, Thailand 5 Department of Biology, Faculty of Science, Ramkhamhaeng University, Bangkok, Thailand 6 Department of Biology, Faculty of Science, Srinakharinwirot University, Bangkok, Thailand 7Royal Forest Department, Bangkok, Thailand corresponding author e-mail : [email protected] Abstract Twenty three genera of Xylariaceae are currently known from Thailand plus the anamorphic genus Muscodor which accounts for close to one third of all known genera. Most of the genera are widely represented throughout the country including Annulohypoxylon , Biscogniauxia , Daldinia , Hypoxylon , and Xylaria . Others are more restricted, sometimes to a single locality as seen with C. selangorensis and others e.g. Rostrohypoxylon , Rhopalostroma and individuals from a number of genera exhibit a northern presence. In common with studies on endophytic fungi in tropical plants Thailand is no exception with many xylariaceous fungi isolated with Xylaria species being especially frequent. The family in Thailand is considered to have many currently unknown members. keywords : diversity, endophytes, secondary metabolites, tropical fungi, xylariaceous fungi Introduction Poronia Willd., Rhopalostroma D. Hawksworth, Thailand is well known to have a rich and Rosellinia De Not., Rostrohypoxylon J. -
Ascomyceteorg 07-06 Ascomyceteorg
Phylacia korfii sp. nov., a new species of Phylacia (Xylariaceae) from French Guiana, with notes on three other Phylacia spp. Jacques FOURNIER Summary: During a field trip to French Guiana in June 2012, a distinctive species of Phylacia was collected. Christian LECHAT It appeared to differ from all known species by significantly larger and pear-shaped ascospores and thus it is described as the new taxon P. korfii J. Fourn. & Lechat. We also noticed the presence of a germ slit on ascospores and we observed that fragments of the stromatal crust yielded pigments in 10% KOH, two cha- racters so far rarely or not documented in this genus. Similar investigations carried out on three other Phylacia Ascomycete.org, 7 (6) : 315-319. spp. showed that recording these characters is taxonomically relevant and should facilitate a better appraisal Novembre 2015 of the known species and the segregation of new taxa. Mise en ligne le 30/11/2015 Keywords: Ascomycota, Hypoxyloideae, Paracou, pyrenomycetes, saproxylic, taxonomy, tropical mycology, Xylariales. Résumé : Lors d'une expédition en Guyane Française en juin 2012, une espèce remarquable du genre Phy- lacia a été récoltée. Elle s'est révélée différente de toutes les espèces connues par des ascospores significa- tivement plus grandes et piriformes et par conséquent elle est décrite comme nouvelle sous le nom de P. korfii J. Fourn. & Lechat. Nous avons aussi remarqué que les ascospores présentaient un sillon germinatif et que les stromas libéraient des pigments dans la potasse à 10 %, deux caractères rarement ou non encore signalés dans ce genre. La recherche de ces caractères chez trois autres espèces du genre Phylacia a montré que leur mise en évidence présente un intérêt taxinomique et devrait aider à une meilleure évaluation des espèces connues et faciliter la reconnaissance d’espèces nouvelles. -
A New Pod-Inhabiting Species of Xylaria (Xylariaceae) from Ethiopia
Xylaria aethiopica sp. nov. – a new pod-inhabiting species of Xylaria (Xylariaceae) from Ethiopia Jacques FOURNIER Abstract: A filiform and nodulose Xylaria repeatedly collected on woody pods of the endemic tree Milletia Yu-Ming JU ferruginea in Ethiopia is documented with macromorphological, micromorphological, culture, and DNA se- Huei-Mei HSIEH quence data. A comparison with known related species sharing a similar ecology and Xylaria taxa previously Uwe LINDEMANN reported from this region show its distinctiveness. the new species X. aethiopica is therefore proposed to accommodate it. Keywords: Ascomycota, Milletia ferruginea, taxonomy, Xylariales. Ascomycete.org, 10 (5) : 209–215 Mise en ligne le 04/11/2018 Résumé : une Xylaire à stromas filiformes et noduleux a été récoltée à plusieurs reprises sur gousses li- 10.25664/ART-244 gneuses de Milletia ferruginea, un arbre endémique d’Éthiopie. Des données concernant sa macromorpho- logie, sa micromorphologie, ses caractéristiques en culture et ses séquences ADN sont apportées. la comparaison avec les espèces connues ayant la même écologie et les taxons de Xylaria préalablement si- gnalés de cette région établissent sa singularité. Par conséquent la nouvelle espèce X. aethiopica est propo- sée. Mots-clés : Ascomycota, Milletia ferruginea, taxinomie, Xylariales. Introduction Material and methods Ethiopia is characterized by highly diverse ecosystems ranging morphological characterization follows fouRNiER et al. (2018a; from the deserts of the Afar Depression with the hottest places on 2018b). fungal collections were deposited in mStR, museum für Naturkunde (münster, Germany) and in HASt, Academia Sinica earth (year-round average temperatures) and the lowest point in (taipei, taiwan). Africa (at 155 meters below sea level) on the one hand to the moun- Cultures were obtained by scooping out perithecial contents and tains of Northern Ethiopia (Simen) and East Ethiopia (Bale) with el- placing them on SmE medium (KENERlEy & RoGERS, 1976). -
Universidade Federal Do Paraná
UNIVERSIDADE FEDERAL DO PARANÁ KELY DA SILVA CRUZ XYLARIACEAE (ASCOMYCOTA) NO PARQUE ESTADUAL DE SÃO CAMILO, PALOTINA, PR CURITIBA 2015 KELY DA SILVA CRUZ XYLARIACEAE (ASCOMYCOTA) NO PARQUE ESTADUAL DE SÃO CAMILO, PALOTINA, PR Dissertação apresentada ao Programa de Pós- Graduação em Botânica, área de concentração em Taxonomia, Biologia e Diversidade de Algas, Fungos e Liquens, Departamento de Botânica, Setor de Ciências Biológicas, Universidade Federal do Paraná, como requisito parcial à obtenção do título de Mestre em Botânica. Orientador: Prof. Dr. Vagner G. Cortez CURITIBA 2015 Dedico ao meu amado filho Keven Gustavo da S. Brandão. AGRADECIMENTOS Primeiramente a Deus, por me abençoar e dar força durante toda minha carreira científica. A minha família que esta sempre ao meu lado me apoiando e vibrando com as minhas conquistas. Todo carinho a minha mãe querida Mª. Lúcia, meu amado filho Keven, minha irmã Gisele que aceitou vir morar comigo no Paraná e me aturou durante o tempo do mestrado. A minha irmã Patrícia e meu irmão Lennon, pela força e ajuda. A minha segunda família, a qual Deus me deu a honra e o prazer de fazer parte, toda gratidão à tia Silvia, a Patty, a Silvete e a vovó Maria. Ao meu querido orientador, Prof. Dr. Vagner G. Cortez por ter aceitado o desafio de me orientar com esse grupo de fungos, obrigada pelos conhecimentos científicos transmitidos durante o curso. Aos professores do PPGBot, por todo o aprendizado. A minha querida amiga Maria Aparecida de Jesus, pelo incentivo, apoio e amizade. Aos pesquisadores Jadergudson Pereira, Marc Stadler, Jacques Fournier, Jack Rogers e Andrea Romero, pela ajuda com material para identificação. -
Morpho-Molecular Characterization of Microfungi Associated with Marine Based Habitats
Mycosphere 11(1): 1–188 (2020) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/11/1/1 Morpho-molecular characterization of microfungi associated with marine based habitats Dayarathne MC1,2,3,4, Jones EBG6, Maharachchikumbura SSN5, Devadatha B7, Sarma VV7, Khongphinitbunjong K2, Chomnunti P1,2 and Hyde KD1,3,4* 1Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 2School of Science, Mae Fah Luang University, Chiang Rai57100, Thailand 3World Agro forestry Centre East and Central Asia Office, 132 Lanhei Road, Kunming 650201, China 4Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, China 5School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 611731, People’s Republic of China 6Department of Botany and Microbiology, King Saudi University, Riyadh, Saudi Arabia 7Department of Biotechnology, School of Life Sciences, Pondicherry University, Kalapet, Pondicherry-605014, India Dayarathne MC, Jones EBG, Maharachchikumbura SSN, Devadatha B, Sarma VV, Khongphinitbunjong K, Chomnunti P, Hyde KD 2020 – Morpho-molecular characterization of microfungi associated with marine based habitats. Mycosphere 11(1), 1–188, Doi 10.5943/mycosphere/11/1/1 Abstract Our investigation of saprobic marine fungi in India, Thailand, Sweden and the UK yielded 57 species accommodated in 26 families. In the present study, we describe two new genera, 37 new species and 15 new host records. Novel genera, Halocryptosphaeria and Halotestudina are introduced within Diatrypaceae (Xylariales) and Testudinaceae (Pleosporales), respectively. The new species, Amarenographium ammophilicola, Asterodiscus mangrovei, Boeremia maritima, Chaetopsina aurantisalinicola, Chloridium salinicola, Coniochaeta arenariae, C.