Dysosma Versipellis in PC3 and Bcap-37 Cell Lines Xiaoqiang Xu, Xiuhong Gao, Linhong Jin, Pinaki S Bhadury, Kai Yuan, Deyu Hu, Baoan Song* and Song Yang*
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NEWSLETTER 140, January 2018
No. 140 Irish Garden Plant Society Newsletter January 2018 Irish Heritage Daffodils Irish Heritage Daffodils IGPS Newsletter January 2018 Irish Heritage Daffodils Editorial Irish Heritage Daffodils Irish Heritage Daffodils Narcissus ‘Border Beauty’ Mary Montaut, Leinster Branch IGPS Narcissus ‘Border Beauty’ The chilly, bright winter weather just after Christmas made me really appreciate some scented subjects in the garden, especially my favourite Daphne bholua ‘Jacqueline Postil’. I was extremely fortunate many years ago to attend a propagation workshop with IGPS at Kinsealy, and they had rooted cuttings of this glorious plant. I bought one and I have adored it ever since. However, I have recently fallen in love just as passionately with another winter-scented shrub and this one, I believe, might be adopted by IGPS as one of our ‘Irish Heritage’ plants, because it is named after an Irish botanist. The shrub is Edgeworthia chrysantha - the golden-headed Edgeworthia. It belongs to the same family as the Daphne, Thymelaeaceae, and originates from the China - Nepal border area. It is naturalized in Japan, where it was planted in the late sixteenth century for paper making and is called the Paper Bush (Mitsumata). There is also an orange- flowered variety called Akebono which is said to be a smaller shrub, but I have never be lucky enough to see this one. It was first classified in 1841, and named in honour Michael Pakenham Edgeworth. He was a younger brother of the novelist, Maria Edgeworth (of Castle Rackrent fame) and lived and worked in India most of his life. However, I feel we should salute his work, and recommend this superb and tolerant shrub. -
Reproductive Biology of the Rare Plant, Dysosma Pleiantha (Berberidaceae): Breeding System, Pollination and Implications for Conservation
Pak. J. Bot ., 47(3): 951-957, 2015. REPRODUCTIVE BIOLOGY OF THE RARE PLANT, DYSOSMA PLEIANTHA (BERBERIDACEAE): BREEDING SYSTEM, POLLINATION AND IMPLICATIONS FOR CONSERVATION XI GONG 1, BI-CAI GUAN 2, *, SHI-LIANG ZHOU 3 AND GANG GE 2 1State Key Laboratory of Food Science and Technology, College of Life Science and Food engineering, Nanchang University, Nanchang 330047, China 2Jiangxi Key Laboratory of Plant Resources, Nanchang University, Nanchang 330031, China. 3State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China. *Corresponding author e-mail: [email protected], Tel.: +86 0791 83969530) Abstract Dysosma pleiantha is an endangered and endemic species in China. We have reported the flowering phenology, breeding system and pollinator activity of the species distributed in Tianmu Mountain (Zhejiang Province) nature reserves. Flowering occurred during the months of early April to late May, with the peak in the middle of the April, and was synchronous across all four subpopulations. The anthesis of an intact inflorescence lasted from sixteen to twenty-three days with eight to eleven days blossom of an individual flower. In D. pleiantha , the morphological development of flowers and fruit leading to the development of mature seeds takes place over a period 3–5 months from flowering. The average of pollen-ovule ratio (P/O) was 18 898.7. The pollen transfer in this species was mainly performed by flies, Hydrotaea chalcogaster (Muscidae). Controlled pollination experiments indicated D. pleiantha was obligate xenogamyous and self- incompatible, and pollination was pollinator-dependent. Controlled pollination experiments showed that the mean fruit set (%) under the natural condition (17.1%) was markedly lower than that of manual cross-pollination (75.6%). -
Natural Selection and Repeated Patterns of Molecular Evolution
RESEARCH ARTICLE Natural selection and repeated patterns of molecular evolution following allopatric divergence Yibo Dong1,2†, Shichao Chen3,4,5†, Shifeng Cheng6, Wenbin Zhou1, Qing Ma1, Zhiduan Chen7, Cheng-Xin Fu8, Xin Liu6*, Yun-peng Zhao8*, Pamela S Soltis3*, Gane Ka-Shu Wong6,9,10*, Douglas E Soltis3,4*, Qiu-Yun(Jenny) Xiang1* 1Department of Plant and Microbial Biology, North Carolina State University, Raleigh, United States; 2Plant Biology Division, Noble Research Institute, Ardmore, United States; 3Florida Museum of Natural History, University of Florida, Gainesville, United States; 4Department of Biology, University of Florida, Gainesville, United States; 5School of Life Sciences and Technology, Tongji University, Shanghai, China; 6Beijing Genomics Institute, Shenzhen, China; 7State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, China; 8Laboratory of Systematic & Evolutionary Botany and Biodiversity, College of Life Sciences, Zhejiang University, Hangzhou, China; 9Department of Biological Sciences, University of Alberta, Edmonton, Canada; 10Department of Medicine, University of Alberta, Edmonton, Canada *For correspondence: [email protected] (XL); Abstract Although geographic isolation is a leading driver of speciation, the tempo and pattern [email protected] (Y-Z); of divergence at the genomic level remain unclear. We examine genome-wide divergence of [email protected] (PSS); putatively single-copy orthologous genes (POGs) in 20 allopatric species/variety pairs from diverse [email protected] (GK-SW); angiosperm clades, with 16 pairs reflecting the classic eastern Asia-eastern North America floristic [email protected] (DES); disjunction. In each pair, >90% of POGs are under purifying selection, and <10% are under positive [email protected] (Q-Y(J)X) selection. -
Podophyllotoxin: History, Recent Advances and Future Prospects
biomolecules Review Podophyllotoxin: History, Recent Advances and Future Prospects Zinnia Shah 1 , Umar Farooq Gohar 1, Iffat Jamshed 1, Aamir Mushtaq 2 , Hamid Mukhtar 1 , Muhammad Zia-UI-Haq 3,*, Sebastian Ionut Toma 4,*, Rosana Manea 4,*, Marius Moga 4 and Bianca Popovici 4 1 Institute of Industrial Biotechnology (IIB), Government College University, Lahore 54000, Pakistan; [email protected] (Z.S.); [email protected] (U.F.G.); [email protected] (I.J.); [email protected] (H.M.) 2 Gulab Devi Institute of Pharmacy, Gulab Devi Educational Complex, Lahore 54000, Pakistan; [email protected] 3 Office of Research, Innovation & Commercialization, Lahore College for Women University, Lahore 54000, Pakistan 4 Faculty of Medicine, Transilvania University of Brasov, 500036 Brasov, Romania; [email protected] (M.M.); [email protected] (B.P.) * Correspondence: [email protected] (M.Z.-U.-H.); [email protected] (S.I.T.); [email protected] (R.M.) Abstract: Podophyllotoxin, along with its various derivatives and congeners are widely recognized as broad-spectrum pharmacologically active compounds. Etoposide, for instance, is the frontline chemotherapeutic drug used against various cancers due to its superior anticancer activity. It has recently been redeveloped for the purpose of treating cytokine storm in COVID-19 patients. Podophyllotoxin and its naturally occurring congeners have low bioavailability and almost all these initially discovered compounds cause systemic toxicity and development of drug resistance. Citation: Shah, Z.; Gohar, U.F.; Moreover, the production of synthetic derivatives that could suffice for the clinical limitations of Jamshed, I.; Mushtaq, A.; Mukhtar, these naturally occurring compounds is not economically feasible. -
DATING PHYLOGENETICALLY BASAL EUDICOTS USING Rbcl SEQUENCES and MULTIPLE FOSSIL REFERENCE POINTS1
American Journal of Botany 92(10): 1737±1748. 2005. DATING PHYLOGENETICALLY BASAL EUDICOTS USING rbcL SEQUENCES AND MULTIPLE FOSSIL REFERENCE POINTS1 CAJSA LISA ANDERSON,2,5 KAÊ RE BREMER,3 AND ELSE MARIE FRIIS4 2Department of Systematic Botany, Evolutionary Biology Centre, Uppsala University, NorbyvaÈgen 18D, SE-752 36 Uppsala, Sweden; 3Stockholm University, Blom's House, SE-106 91 Stockholm, Sweden; and 4Department of Palaeobotany, Swedish Museum of Natural History, P.O. Box 50007, SE-104 05 Stockholm, Sweden A molecular dating of the phylogenetically basal eudicots (Ranunculales, Proteales, Sabiales, Buxales and Trochodendrales sensu Angiosperm Phylogeny Group II) has been performed using several fossils as minimum age constraints. All rbcL sequences available in GenBank were sampled for the taxa in focus. Dating was performed using penalized likelihood, and results were compared with nonparametric rate smoothing. Fourteen eudicot fossils, all with a Cretaceous record, were included in this study for age constraints. Nine of these are assigned to basal eudicots and the remaining ®ve taxa represent core eudicots. Our study shows that the choice of methods and fossil constraints has a great impact on the age estimates, and that removing one single fossil change the results in the magnitude of tens of million years. The use of several fossil constraints increase the probability of approaching the true ages. Our results suggest a rapid diversi®cation during the late Early Cretaceous, with all the lineages of basal eudicots emerging during the latest part of the Early Cretaceous. The age of Ranunculales was estimated to 120 my, Proteales to 119 my, Sabiales to 118 my, Buxales to 117 my, and Trochodendrales to 116 my. -
Disanthus Cercidifolius Subsp. Longipes (Hamamelidaceae) Based on AFLP Analysis
Genetic Variability and Population Structure of Disanthus cercidifolius subsp. longipes (Hamamelidaceae) Based on AFLP Analysis Yi Yu1, Qiang Fan1, Rujiang Shen1, Wei Guo3, Jianhua Jin1, Dafang Cui2*, Wenbo Liao1* 1 Guangdong Key Laboratory of Plant Resources and Key Laboratory of Biodiversity Dynamics and Conservation of Guangdong Higher Education Institutes, School of Life Sciences, Sun Yat-Sen University, Guangzhou, China, 2 College of Forestry, South China Agriculture University, Guangzhou, China, 3 Department of Horticulture and Landscape Architecture, Zhongkai University of Agriculture and Engineering, Guangzhou, China Abstract Disanthus cercidifolius subsp. longipes is an endangered species in China. Genetic diversity and structure analysis of this species was investigated using amplified fragments length polymorphism (AFLP) fingerprinting. Nei’s gene diversity ranged from 0.1290 to 0.1394. The AMOVA indicated that 75.06% of variation was distributed within populations, while the between-group component 5.04% was smaller than the between populations-within-group component 19.90%. Significant genetic differentiation was detected between populations. Genetic and geographical distances were not correlated. PCA and genetic structure analysis showed that populations from East China were together with those of the Nanling Range. These patterns of genetic diversity and levels of genetic variation may be the result of D. c. subsp. longipes restricted to several isolated habitats and ‘‘excess flowers production, but little fruit set’’. It is necessary to protect all existing populations of D. c. subsp. longipes in order to preserve as much genetic variation as possible. Citation: Yu Y, Fan Q, Shen R, Guo W, Jin J, et al. (2014) Genetic Variability and Population Structure of Disanthus cercidifolius subsp. -
Developing DNA Barcodes for Species Identification In
Journal of Systematics and Evolution 9999 (9999): 1–13 (2014) doi: 10.1111/jse.12076 Research Article Developing DNA barcodes for species identification in Podophylloideae (Berberidaceae) 1Yun‐Rui MAO 1Yong‐Hua ZHANG 2Koh NAKAMURA 3Bi‐Cai GUAN 1Ying‐Xiong QIU* 1(Key Laboratory of Conservation Biology for Endangered Wildlife of the Ministry of Education, and Laboratory of Systematic and Evolutionary Botany and Biodiversity, College of Life Sciences, Zhejiang University, Hangzhou 310058, China) 2(Herbarium (HAST), Biodiversity Research Center, Academia Sinica, Taipei 115, Nangang, Taiwan, China) 3(College of Life Sciences and Food Engineering, Nanchang University, Nanchang 310031, China) Abstract Species of Podophyllum, Dysosma, Sinopodophyllum, and Diphylleia, genera from Podophylloideae of Berberidaceae, have long been used in traditional herbal medicine in East Asia and/or North America. Accurate identification of the species of these four genera is crucial to their medicinal uses. In this study, we tested the utility of nine barcodes (matK, rbcL, atpH‐atpI, rpl32‐trnLUAG, rps18‐clpp, trnL‐trnF, trnL‐ndhJ, trnS‐trnfM, and internal transcribed spacer (ITS)) to discriminate different species of Podophylloideae. Thirty‐six individuals representing 12 species of Podophylloideae were collected from different locations in China, Japan, and North America. We assessed the feasibility of amplification and sequencing of all markers, examined the levels of the barcoding gap based on DNA sequence divergence between ranges of intra‐ and interspecific variation using pairwise distances, and further evaluated successful identifications using each barcode by similarity‐based and tree‐based methods. Results showed that nine barcodes, except rps18‐clpp, have a high level of primer universality and sequencing success. -
Genetic Divergence and Phylogeographic
Zhao and Gong BMC Evolutionary Biology (2015) 15:134 DOI 10.1186/s12862-015-0374-5 RESEARCH ARTICLE Open Access Genetic divergence and phylogeographic history of two closely related species (Leucomeris decora and Nouelia insignis) across the 'Tanaka Line' in Southwest China Yu-Juan Zhao and Xun Gong* Abstract Background: Leucomeris decora and Nouelia insignis (Asteraceae) are narrowly and allopatrically distributed species, separated by the important biogeographic boundary Tanaka Line in Southwest China. Previous morphological, cytogenetic and molecular studies suggested that L. decora is sister to N. insignis. However, it is less clear how the two species diverged, whether in full isolation or occurring gene flow across the Tanaka Line. Here, we performed a molecular study at the population level to characterize genetic differentiation and decipher phylogeographic history in two closely related species based on variation examined in plastid and nuclear DNAs using a coalescent-based approach. Results: These morphologically distinct species share plastid DNA (cpDNA) haplotypes. In contrast, Bayesian analysis of nuclear DNA (nDNA) uncovered two distinct clusters corresponding to L. decora and N. insignis. Based on the IMa analysis, no strong indication of migration was detected based on both cpDNA and nDNA sequences. The molecular data pointed to a major west-east split in nuclear DNA between the two species corresponding with the Tanaka Line. The coalescent time estimate for all cpDNA haplotypes dated to the Mid-Late Pleistocene. The estimated demographic parameters showed that the population size of L. decora was similar to that of N. insignis and both experienced limited demographic fluctuations recently. Conclusions: The study revealed comprehensive species divergence and phylogeographic histories of N. -
Pollinator Scarcity Drives the Shift to Delayed Selfing
Research Article Pollinator scarcity drives the shift to delayed selfing in Himalayan mayapple Podophyllum hexandrum (Berberidaceae) Ying-Ze Xiong1, Qiang Fang2 and Shuang-Quan Huang1,3* 1 State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China 2 College of Agriculture, Henan University of Science and Technology, Luoyang, Henan 471003, China 3 College of Life Sciences, Central China Normal University, Wuhan 430079, China Received: 13 March 2013; Accepted: 6 August 2013; Published: 26 August 2013 Citation: Xiong Y-Z, Fang Q, Huang S-Q. 2013. Pollinator scarcity drives the shift to delayed selfing in Himalayan mayapple Podophyllum hexandrum (Berberidaceae). AoB PLANTS 5: plt037; doi:10.1093/aobpla/plt037 Abstract. Recent molecular phylogenetics have indicated that American mayapple (mainly self-incompatible, SI) and Himalayan mayapple, which was considered to be self-compatible (SC), are sister species with disjunct distribution between eastern Asia and eastern North America. We test a hypothesis that the persistence of this earlyspring flowering herb in the Himalayan region is attributable to the transition from SI to SC, the capacity for selfing in an unpredictable pollination environment. Pollinator observations were conducted in an alpine meadow with hundreds of Himalayan mayapple (Podophyllum hexandrum Royle) individuals over 2 years. To examine autogamy, seed set under different pol- lination treatments was compared. Toclarify whetherautomatic self-pollination is achieved bymovement of the pistil as a previous study suggested, we measured incline angles of the pistil and observed flower movement during anthesis using video. Floral visitors to the nectarless flowers were very rare, but solitary bees and honeybees could be potential pollinators. -
Endophytic Microorganism from the Endangered Plant Nervilia Fordii (Hance) Schltr
Endophytic Microorganism From the Endangered Plant Nervilia Fordii (Hance) Schltr. In the Southwest Karst Area of China: Isolation, Genetic Diversity and Potential Functional Discovery Xiao-Ming Tan Guangxi University of Chinese Medicine, Guangxi Key Laboratory Cultivation Base of TCM Prevention and Treatment of Obesity Xin-Feng Yang Guangxi University of Chinese Medicine, Guangxi Key Laboratory Cultivation Base of TCM Prevention and Treatment of Obesity Ya-Qin Zhou ( [email protected] ) Guangxi Botanical Garden of Medicinal Plant Peng Fu Guangxi University of Chinese Medicine, Guangxi Key Laboratory Cultivation Base of TCM Prevention and Treatment of Obesity Shi-Yi Hu Guangxi University of Chinese Medicine, Guangxi Key Laboratory Cultivation Base of TCM Prevention and Treatment of Obesity Zhong-Heng Shi Guangxi University of Chinese Medicine, Guangxi Key Laboratory Cultivation Base of TCM Prevention and Treatment of Obesity Research Article Keywords: Nervilia fordii, vulnerable perennial herb, Bletilla striata seeds, various endophytic fungi, orchids Posted Date: April 27th, 2021 DOI: https://doi.org/10.21203/rs.3.rs-413613/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/12 Abstract The plant Nervilia fordii (Hance) Schltr. is known for its antimicrobial and antitumor properties. It is a rare and vulnerable perennial herb of the Orchidaceae family. In this study, 984 isolates were isolated from various tissues of N. fordii. and were identied through the sequence analyses of the internal transcribed spacer region of the rRNA gene. Except for 12 unidentied fungi, all others were aliated to at least 39 genera of 14 orders of Ascomycota (72.66%) and Basidiomycota (19.00%). -
Title Phylogenetic Distribution of Lignan Producing Plants
Title Phylogenetic Distribution of Lignan Producing Plants Author(s) UMEZAWA, Toshiaki Wood research : bulletin of the Wood Research Institute Kyoto Citation University (2003), 90: 27-110 Issue Date 2003-09-30 URL http://hdl.handle.net/2433/53098 Right Type Departmental Bulletin Paper Textversion publisher Kyoto University Note Phylogenetic Distribution of Lignan Producing Plants T oshiaki U MEZAWA *1 (Received May 31, 2003) Keywords: biosynthesis, evolution, lignans, phylogenetic distribution herein the author presents the complete and detailed list of Abstract phylogenetic distribution oflignan producing plant species Lignans are phenylpropanoid dimers, where the phenyl in relation to 66 typical lignans belonging to the 12 lignan propane units are linked by the central carbon (Cs) oftheir subgroups. 7 side chains. The chemical structures of lignans vary In the previous review ), 66 typicallignans (Fig. 1) were substantially in basic carbon frameworks, as do their chosen based on a database search. Briefly, 308 typical 2 oxidation levels and substitution patterns. In addition, lignans listed by Ayres and Loike ) was subjected to a lignans show considerable diversity in terms of enanti database search [SciFinder Scholar; database, CAPLUS; omeric compositions, biosynthesis, and phylogenetic keywords, "the name ofeach lignan (e.g. pinoresinol)" and distribution. In this paper, the phylogenetic distribution "isolation"], and lignans which appeared in more than 10 of plants producing more than 70 typical lignans with a papers were chosen, giving rise to the 66 lignans. As variety of chemical structures are listed based on a data shown in Fig. 1, the 66 lignans were classified into the 12 base search. subgroups taki~g the possible biosynthetic pathways into account. -
A Preliminary Study of Genetic Variation in the Endangered, Chinese Endemic Species Dysosma Versipellis (Berberidaceae)
QIUBot. Bull.et al. Acad. — Genetic Sin. (2005) variation 46: 61-69 in Dysosma versipellis 61 A preliminary study of genetic variation in the endangered, Chinese endemic species Dysosma versipellis (Berberidaceae) Ying-Xiong QIU1, Xin-Wen ZHOU1, Cheng-Xin FU1,*, and Yuk-Sing Gilbert CHAN2 1Laboratory of Systematic and Evolutionary Botany, Department of Biology, College of Life Sciences, Zhejiang University, Hangzhou 310029, P. R. China 2Department of Applied Biology and Chemical Technology, The Hong Kong Polytechnic University, Hung Hom, Hong Kong (Received December 23, 2003; Accepted September 30, 2004) Abstract. This study represents a preliminary analysis of allozyme variation in Dysosma versipellis (Berberidaceae), an endangered plant species endemic to China. Five populations of D. versipellis and one population of D. pleiantha were sampled and analyzed using starch gel electrophoresis of nine enzymes that corresponded to nine interpretable loci. Levels of genetic polymorphism within populations (means: P = 15.54%, A = 1.16, He = 0.045) were much smaller than values for seed plants in general (P = 34.2%, A = 1.53, He = 0.113), as well as values for other endemic species (P = 26.3%, A = 1.39, He = 0.063). Mean values for the FST across all D. versipellis populations tended to be high (FST = 0.468). An indirect estimate of the number of migrants per generation (Nm = 0.284) indicated that gene flow is low among populations of D. versipellis. Additionally, analysis of genetic variation revealed a substantial heterozygosity deficiency in all analyzed populations except HB. Genotype frequencies within D. versipellis popu- lations indicate that they may be severely inbred, making inbreeding depression a possible explanation for the low seed set observed in this species.