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Functional Analysis of the Homeobox Gene Tur-2 During Mouse Embryogenesis
Functional Analysis of The Homeobox Gene Tur-2 During Mouse Embryogenesis Shao Jun Tang A thesis submitted in conformity with the requirements for the Degree of Doctor of Philosophy Graduate Department of Molecular and Medical Genetics University of Toronto March, 1998 Copyright by Shao Jun Tang (1998) National Library Bibriothèque nationale du Canada Acquisitions and Acquisitions et Bibiiographic Services seMces bibliographiques 395 Wellington Street 395, rue Weifington OtbawaON K1AW OttawaON KYAON4 Canada Canada The author has granted a non- L'auteur a accordé une licence non exclusive licence alIowing the exclusive permettant à la National Library of Canada to Bibliothèque nationale du Canada de reproduce, loan, distri%uteor sell reproduire, prêter' distribuer ou copies of this thesis in microform, vendre des copies de cette thèse sous paper or electronic formats. la forme de microfiche/nlm, de reproduction sur papier ou sur format électronique. The author retains ownership of the L'auteur conserve la propriété du copyright in this thesis. Neither the droit d'auteur qui protège cette thèse. thesis nor substantial extracts fkom it Ni la thèse ni des extraits substantiels may be printed or otherwise de celle-ci ne doivent être imprimés reproduced without the author's ou autrement reproduits sans son permission. autorisation. Functional Analysis of The Homeobox Gene TLr-2 During Mouse Embryogenesis Doctor of Philosophy (1998) Shao Jun Tang Graduate Department of Moiecular and Medicd Genetics University of Toronto Abstract This thesis describes the clonhg of the TLx-2 homeobox gene, the determination of its developmental expression, the characterization of its fiuiction in mouse mesodem and penpheral nervous system (PNS) developrnent, the regulation of nx-2 expression in the early mouse embryo by BMP signalling, and the modulation of the function of nX-2 protein by the 14-3-3 signalling protein during neural development. -
The Mechanisms of Hedgehog Signal Transduction
Markku Varjosalo The Mechanisms of Hedgehog Signal Transduction Publications of the National Public Health Institute A 12/2008 Department of Molecular Medicine National Public Health Institute and Institute of Biomedicine, University of Helsinki, Finland Helsinki, Finland 2008 Markku Varjosalo THE MECHANISMS OF HEDGEHOG SIGNAL TRANSDUCTION ACADEMIC DISSERTATION To be publicly discussed with the permission of the Faculty of Medicine, University of Helsinki, in Lecture Hall 2, Biomedicum Helsinki, on 2nd May 2008, at noon. National Public Health Institute, Helsinki, Finland and Institute of Biomedicine, University of Helsinki, Finland Helsinki 2008 Publications of the National Public Health Institute KTL A12 / 2008 Copyright National Public Health Institute Julkaisija-Utgivare-Publisher Kansanterveyslaitos (KTL) Mannerheimintie 166 00300 Helsinki Puh. vaihde (09) 474 41, telefax (09) 4744 8408 Folkhälsoinstitutet Mannerheimvägen 166 00300 Helsingfors Tel. växel (09) 474 41, telefax (09) 4744 8408 National Public Health Institute Mannerheimintie 166 FIN-00300 Helsinki, Finland Telephone +358 9 474 41, telefax +358 9 4744 8408 ISBN 978-951-740-805-9 ISSN 0359-3584 ISBN 978-951-740-806-6 (pdf) ISSN 1458-6290 (pdf) Kannen kuva - cover graphic: Yliopistopaino Helsinki 2008 Supervised by Academy Professor Jussi Taipale Genome-Scale Biology Program Institute of Biomedicine, University of Helsinki Department of Molecular Medicine National Public Health Institute (KTL) Helsinki, Finland Reviewed by Professor Tomi Mäkelä Genome-Scale Biology Program -
Dynamics of Maternal Morphogen Gradients in Drosophila Stanislav Y Shvartsman1, Mathieu Coppey1 and Alexander M Berezhkovskii2
COGEDE-512; NO OF PAGES 6 Available online at www.sciencedirect.com Dynamics of maternal morphogen gradients in Drosophila Stanislav Y Shvartsman1, Mathieu Coppey1 and Alexander M Berezhkovskii2 The first direct studies of morphogen gradients were done in ified genes [1]. Since most of these studies were done the end of 1980s, in the early Drosophila embryo, which is with fixed embryos, maternal gradients were viewed as patterned under the action of four maternally determined relatively static signals. Several recent studies report morphogens. Since the early studies of maternal morphogens quantitative measurements of the anterior, dorsoventral, were done with fixed embryos, they were viewed as relatively and terminal gradients and propose biophysical models static signals. Several recent studies analyze dynamics of the for their formation and interpretation. We review these anterior, dorsoventral, and terminal patterning signals. The studies and discuss how their conclusions affect our view results of these quantitative studies provide critical tests of of dynamics in one of the most extensively studied classical models and reveal new modes of morphogen patterning systems. regulation and readout in one of the most extensively studied patterning systems. Bicoid gradient: diffusion and reversible Addresses trapping of a stable protein? 1 Department of Chemical Engineering and Lewis-Sigler Institute for In the end of 1980s, studies of the distribution and Integrative Genomics, Princeton University, New Jersey, United States transcriptional effects of the Bicoid (Bcd) protein in 2 Mathematical and Statistical Computing Laboratory, Division of Computational Bioscience, Center for Information Technology, National the Drosophila embryo provided the first molecularly Institutes of Health, Bethesda, MD 20892, United States defined example of a morphogen gradient [2–4]. -
Differentiating Mesoderm and Muscle Cell Lineages During Drosophila Embryogenesis BRENDA LILLY, SAMUEL GALEWSKY, ANTHONY B
Proc. Nati. Acad. Sci. USA Vol. 91, pp. 5662-5666, June 1994 Developmental Biology D-MEF2: A MADS box transcription factor expressed in differentiating mesoderm and muscle cell lineages during Drosophila embryogenesis BRENDA LILLY, SAMUEL GALEWSKY, ANTHONY B. FIRULLI, ROBERT A. SCHULZ, AND ERIC N. OLSON* Department of Biochemistry and Molecular Biology, Box 117, The University of Texas M. D. Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, TX 77030 Communicated by Thomas P. Maniatis, January 21, 1994 ABSTRACT The myocyte enhancer factor (MEF) 2 family cle-specific genes (13). The recent cloning of MEF2 has oftranscription factors has been Implicated In the regultion of revealed that it belongs to the MADS (MCM1, Agamous, musle tansription in vertebrates. We have cloned a protein Deficiens, and serum-response factor) family oftranscription fromDrosophia, termed D-MEF2, that shares extensive amino factors. Four MEF2 genes, designated MEF2A, -B, -C, and acid homology with the MADS (MCM1, Agamous, Defdcens, -D, have been cloned from vertebrates (10, 14-19). The and serum-response factor) d of the vertebrate MEF2 proteins encoded by these genes are highly homologous proteins. D-mef2 gene expression Is first detected dring within the 55-amino-acid MADS domain at their amino Drosophila embryogenesis within mesodermal precursor cells termini and within an adjacent MEF2-specific region of 27 prior to spcation of the somatic and visceral muscle lin- residues, but they diverge outside of these regions. eages. Expression of D-mef2 Is dependent on the mesodermal We have cloned aDrosophila homologue ofMEF2, termed determinants twist and snail but independent ofthe homeobox- D-MEF2,t which, to our knowledge, is the first MADS containng gene dtnman, which is required for visceral muscle protein to be identified in Drosophila. -
Dynamics of the Dorsal Morphogen Gradient
Dynamics of the Dorsal morphogen gradient Jitendra S. Kanodiaa, Richa Rikhyb, Yoosik Kima, Viktor K. Lundc, Robert DeLottoc, Jennifer Lippincott-Schwartzb,1, and Stanislav Y. Shvartsmana,1 aDepartment of Chemical Engineering and Lewis-Sigler Institute for Integrative Genomics, Princeton University, Washington Road, Princeton, NJ 08544; bCell Biology and Metabolism Branch, NIH, Building 32, 18 Library Drive, Bethesda, MD 20892; and cDepartment of Molecular Biology, University of Copenhagen, Ole Maaløes Vej 5, DK-2200 Copenhagen, Denmark Contributed by Jennifer Lippincott-Schwartz, October 28, 2009 (sent for review September 6, 2009) The dorsoventral (DV) patterning of the Drosophila embryo depends several minutes (16). Nuclei change in volume and undergo five on the nuclear localization gradient of Dorsal (Dl), a protein related to synchronous divisions (15, 17). To explore how these processes the mammalian NF-B transcription factors. Current understanding of contribute to the formation of the Dl gradient, we formulated a how the Dl gradient works has been derived from studies of its mathematical model that accounts for the nuclear import and transcriptional interpretation, but the gradient itself has not been export of Dl, its interaction with Cact, and the dynamics of nuclear quantified. In particular, it is not known whether the Dl gradient is density and volumes in the syncytial blastoderm. Based on the stable or dynamic during the DV patterning of the embryo. To address computational analysis of this model and a number of our model- this question, we developed a mathematical model of the Dl gradient based experiments, we argue that the Dl gradient is dynamic and, and constrained its parameters by experimental data. -
The Physical Mechanisms of Drosophila Gastrulation: Mesoderm and Endoderm Invagination
| FLYBOOK DEVELOPMENT AND GROWTH The Physical Mechanisms of Drosophila Gastrulation: Mesoderm and Endoderm Invagination Adam C. Martin1 Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts 02142 ORCID ID: 0000-0001-8060-2607 (A.C.M.) ABSTRACT A critical juncture in early development is the partitioning of cells that will adopt different fates into three germ layers: the ectoderm, the mesoderm, and the endoderm. This step is achieved through the internalization of specified cells from the outermost surface layer, through a process called gastrulation. In Drosophila, gastrulation is achieved through cell shape changes (i.e., apical constriction) that change tissue curvature and lead to the folding of a surface epithelium. Folding of embryonic tissue results in mesoderm and endoderm invagination, not as individual cells, but as collective tissue units. The tractability of Drosophila as a model system is best exemplified by how much we know about Drosophila gastrulation, from the signals that pattern the embryo to the molecular components that generate force, and how these components are organized to promote cell and tissue shape changes. For mesoderm invagination, graded signaling by the morphogen, Spätzle, sets up a gradient in transcriptional activity that leads to the expression of a secreted ligand (Folded gastrulation) and a transmembrane protein (T48). Together with the GPCR Mist, which is expressed in the mesoderm, and the GPCR Smog, which is expressed uniformly, these signals activate heterotrimeric G-protein and small Rho-family G-protein signaling to promote apical contractility and changes in cell and tissue shape. A notable feature of this signaling pathway is its intricate organization in both space and time. -
Sak/Plk4 and Mitotic Fidelity
Oncogene (2005) 24, 306–312 & 2005 Nature Publishing Group All rights reserved 0950-9232/05 $30.00 www.nature.com/onc Sak/Plk4 and mitotic fidelity Carol J Swallow1,2, Michael A Ko1,2, Najeeb U Siddiqui1,3,4, John W Hudson5 and James W Dennis*,1,3,4 1Samuel Lunenfeld Research Institute, Mount Sinai Hospital, 600 University Ave. R988, Toronto, Ontario, Canada M5G 1X5; 2Department of Surgery, University of Toronto, Ontario, Canada; 3Department of Microbiology and Medical Genetics, University of Toronto, Ontario, Canada; 4Department of Laboratory Medicine and Pathobiology, University of Toronto, Ontario, Canada; 5Department of Biological Sciences, University of Windsor, Ontario, Canada Sak/Plk4 differs from other polo-like kinases in having (Fernebro et al., 2002). Mutation of classical tumor only a single polo box, which assumes a novel dimer fold suppressor genes follows the Knudsen 2-hit model, that localizes to the nucleolus, centrosomes and the whereby loss of the wild-type allele as a ‘second hit’ cleavage furrow.Sak expression increases gradually in S frequently results in relaxed cellular growth controls through M phase, and Sak is destroyed by APC/C (Knudson, 1971). Inherited cancer syndromes such as dependent proteolysis.Sak-deficient mouse embryos Li-Fraumeni (p53, Chk2) and ataxia telangiectasia arrest at E7.5 and display an increased incidence of (ATM) are examples of autosomal recessive mutations apoptosis and anaphase arrest.Sak þ /À mice are haploin- in checkpoint proteins that normally delay the cell cycle sufficient for tumor suppression, with spontaneous tumors in response to DNA damage and environmental stresses developing primarily in the liver with advanced age. -
S41467-018-04754-Z.Pdf
ARTICLE DOI: 10.1038/s41467-018-04754-z OPEN Guided morphogenesis through optogenetic activation of Rho signalling during early Drosophila embryogenesis Emiliano Izquierdo 1, Theresa Quinkler1 & Stefano De Renzis 1 During organismal development, cells undergo complex changes in shape whose causal relationship to individual morphogenetic processes remains unclear. The modular nature of 1234567890():,; such processes suggests that it should be possible to isolate individual modules, determine the minimum set of requirements sufficient to drive tissue remodeling, and re-construct morphogenesis. Here we use optogenetics to reconstitute epithelial folding in embryonic Drosophila tissues that otherwise would not undergo invagination. We show that precise spatial and temporal activation of Rho signaling is sufficient to trigger apical constriction and tissue folding. Induced furrows can occur at any position along the dorsal–ventral or anterior–posterior embryo axis in response to the spatial pattern and level of optogenetic activation. Thus, epithelial folding is a direct function of the spatio-temporal organization and strength of Rho signaling that on its own is sufficient to drive tissue internalization independently of any pre-determined condition or differentiation program associated with endogenous invagination processes. 1 EMBL Heidelberg, Meyerhofstrasse 1, 69117 Heidelberg, Germany. Correspondence and requests for materials should be addressed to S.D.R. (email: [email protected]) NATURE COMMUNICATIONS | (2018) 9:2366 | DOI: 10.1038/s41467-018-04754-z | www.nature.com/naturecommunications 1 ARTICLE NATURE COMMUNICATIONS | DOI: 10.1038/s41467-018-04754-z raditional genetic approaches have played a pivotal role in Results establishing the requirement of individual gene activities RhoGEF2 plasma membrane recruitment and tissue responses. -
Arxiv:2011.01294V2 [Q-Bio.PE] 23 Nov 2020 of Body Plans
Studying evolution of the primary body axis in vivo and in vitro Kerim Anlas1, Vikas Trivedi1;2;∗ The metazoan body plan is established during early embryogenesis via collective cell rearrangements and evolutionarily conserved gene networks, as part of a process com- monly referred to as gastrulation. While substantial progress has been achieved in terms of characterizing the embryonic development of several model organisms, underlying principles of many early patterning processes nevertheless remain enigmatic. Despite the diversity of (pre-)gastrulating embryo and adult body shapes across the animal kingdom, the body axes, which are arguably the most fundamental features, generally remain identical between phyla. Recently there has been a renewed appreciation of ex vivo and in vitro embryo-like systems to model early embryonic patterning events. Here, we briefly review key examples and propose that similarities in morphogenesis as well as associated gene expression dynamics may reveal an evolutionarily conserved developmental mode as well as provide further insights into the role of external or extraembryonic cues in shaping the early embryo. In summary, we argue that embryo-like systems can be employed to inform previously uncharted aspects of animal body plan evolution as well as associated patterning rules. 1. Introduction In this perspective, we outline metazoan body axes and con- Metazoans display vast morphological diversity, yet body served initial patterning genes Wnt and Bra/T, followed by a plans can universally be distilled to the presence of one to brief review and comparison of mostly recent embryo-like sys- three body axes. Contrasted with protists, a characteristic tems in an evolutionary context. -
Conserved Signaling Mechanisms in Drosophila Heart Development
DEVELOPMENTAL DYNAMICS 246:641–656, 2017 DOI: 10.1002/DVDY.24530 REVIEWS Conserved Signaling Mechanisms in Drosophila Heart Development a Shaad M. Ahmad 1,2* 1Department of Biology, Indiana State University, Terre Haute, Indiana 2The Center for Genomic Advocacy, Indiana State University, Terre Haute, Indiana Abstract: Signal transduction through multiple distinct pathways regulates and orchestrates the numerous biological pro- cesses comprising heart development. This review outlines the roles of the FGFR, EGFR, Wnt, BMP, Notch, Hedgehog, Slit/ Robo, and other signaling pathways during four sequential phases of Drosophila cardiogenesis—mesoderm migration, cardiac mesoderm establishment, differentiation of the cardiac mesoderm into distinct cardiac cell types, and morphogenesis of the heart and its lumen based on the proper positioning and cell shape changes of these differentiated cardiac cells—and illus- trates how these same cardiogenic roles are conserved in vertebrates. Mechanisms bringing about the regulation and combi- natorial integration of these diverse signaling pathways in Drosophila are also described. This synopsis of our present state of knowledge of conserved signaling pathways in Drosophila cardiogenesis and the means by which it was acquired should facili- tate our understanding of and investigations into related processes in vertebrates. Developmental Dynamics 246:641–656, 2017. VC 2017 Wiley Periodicals, Inc. Key words: heart development; Drosophila cardiogenesis; cardiac mesoderm specification; cardiac morphogenesis; -
Mechanisms of Epithelial Morphogenesis and Integrity During Nematostella Vectensis Development and Shigella Pathogenesis by ASHL
Mechanisms of epithelial morphogenesis and integrity during Nematostella vectensis development and Shigella pathogenesis BY ASHLEIGH E FRITZ Submitted to the graduate degree program in Cell Biology and Anatomy and the Graduate Faculty of the University of Kansas in partial fulfillment of the requirements for the degree of Doctor of Philosophy. ________________________________ Matthew C. Gibson, Ph.D., Co-Chair _______________________________ William H. Kinsey, Ph.D., Co-Chair ________________________________ Lane K. Christenson, Ph.D. _______________________________ Jennifer L. Gerton, Ph.D. ________________________________ Brenda J. Rongish, Ph.D. Date Defended: March 28, 2014 The Dissertation Committee for Ashleigh E Fritz certifies that this is the approved version of the following dissertation: Mechanisms of epithelial morphogenesis and integrity during Nematostella vectensis development and Shigella pathogenesis ________________________________ Matthew C. Gibson, Ph.D., Co-Chair ________________________________ William H. Kinsey, Ph.D., Co-Chair Date approved: April 4, 2014 ii Abstract The transition to animal multicellularity involved the evolution of single cells organizing into sheets of tissue. The advent of tissues allowed for specialization and diversification, which led to the formation of complex structures and a variety of body plans. These epithelial tissues undergo morphogenesis during animal development, and the establishment and maintenance of their polarity and integrity is crucial for homeostasis and prevention of pathogenesis. -
Embryonic Transcription and the Control of Developmental Pathways
Copyright 0 1996 by the Genetics Society of America Embryonic Transcription and the Control of Developmental Pathways Eric Wieschaus Department of Molecular Biology, Princeton University, Princeton, New Jersey 08544 It appears that the initial steps up to the [sea urchin] selected to play unique, controlling roles in develop- blastula stage are independent of the quality of the nu- ment. In this admittedly extreme reformulation of BO- clear substance, even though it is essential that the nu- VERI’S observation, I will restrict consideration to those clear substance be of a kind capable of existing in the egg. The necessity for particular chromosomes becomes genes whose products must be supplied zygotically and apparent first with the formation of the primary mesen- to organisms that have minimized their transcriptional chyme and from then on shows up in all processes asfar requirements during embryogenesis. I will first present as development can be observed. With respect to reasons why such a division of labor makes teleological those characters in which we are able to recognize indi- sense and then examine the data from Drosophila to vidual variations, the nuclear substance and not the cyte plasmic cell substance imposes its specific character on determine the extent to which gene activityactually the developing trait. obeys these expectations. Then I will discuss the excep- . Earlier stages, for which according to our results, tions, i.e., certain wellcharacterized cases where partic- specific chromosomes are not necessary, demonstrate a ular Drosophila genes are supplied zygotically but do purely maternal character. I would like to ascribe to not seem to play controlling roles.