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Supplementary Table S1: Amplification Scores and Average Expression Scores for All Paired Samples Based on the TCGA Copy Number Data and Gene Expression Data

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Supplementary Table S1: Amplification Scores and Average Expression Scores for All Paired Samples Based on the TCGA Copy Number Data and Gene Expression Data Supplementary Table S1: Amplification scores and average expression scores for all paired samples based on the TCGA copy number data and gene expression data Sample Amplification Scores Average expression scores TCGA-46-3768-01A-01D-1519-02 2.045246981 0.672389419 TCGA-60-2722-01A-01D-0847-02 1.916644908 0.785999602 TCGA-60-2711-01A-01D-0847-02 1.523310153 0.766122929 TCGA-18-3412-01A-01D-1519-02 1.472280991 0.349112684 TCGA-34-2600-01A-01D-0847-02 1.370236474 0.343048213 TCGA-43-3394-01A-01D-1519-02 1.34788017 0.466472433 TCGA-18-3408-01A-01D-1519-02 1.334968882 0.16463217 TCGA-66-2800-01A-01D-1197-02 1.333906029 0.529406238 TCGA-34-5240-01A-01D-1438-02 1.327530436 0.48692157 TCGA-66-2795-01A-02D-1519-02 1.294191556 0.276733412 TCGA-22-4601-01A-01D-1438-02 1.293028928 0.611597034 TCGA-66-2742-01A-01D-1519-02 1.283898207 0.684409253 TCGA-33-4533-01A-01D-1197-02 1.26161948 0.671151814 TCGA-66-2794-01A-01D-1197-02 1.260307276 0.602141435 TCGA-66-2766-01A-01D-0847-02 1.253831174 0.39553029 TCGA-66-2792-01A-01D-1519-02 1.211086939 0.484442252 TCGA-18-3416-01A-01D-1519-02 1.204938576 0.267573392 TCGA-39-5037-01A-01D-1438-02 1.190998509 0.807937473 TCGA-21-1077-01A-01D-0688-02 1.187561162 0.825188811 TCGA-60-2710-01A-01D-0847-02 1.180211422 0.209100556 TCGA-60-2719-01A-01D-0847-02 1.177541443 0.491699962 TCGA-66-2759-01A-01D-0847-02 1.177429217 0.368721757 TCGA-34-2605-01A-01D-0847-02 1.151803931 0.309992646 TCGA-37-4133-01A-01D-1095-02 1.124043658 0.227949298 TCGA-22-4613-01A-01D-1438-02 1.117028447 0.535916581 TCGA-66-2737-01A-01D-1519-02 1.08618485 0.435342819 TCGA-21-1082-01A-01D-0688-02 1.021712611 0.339142166 TCGA-39-5021-01A-01D-1438-02 1.014333233 0.789466366 TCGA-33-4538-01A-01D-1197-02 1.013761423 0.455192731 TCGA-66-2783-01A-01D-1197-02 0.989721647 0.334903399 TCGA-51-4080-01A-01D-1095-02 0.981245697 0.314741489 TCGA-60-2713-01A-01D-0847-02 0.970758043 0.150807621 TCGA-21-1075-01A-01D-0688-02 0.963846495 0.271133341 TCGA-21-1072-01A-01D-0688-02 0.957732985 0.231759062 TCGA-66-2777-01A-01D-1197-02 0.957292967 0.513311125 TCGA-37-4135-01A-01D-1095-02 0.954508329 -0.088024955 TCGA-33-4532-01A-01D-1197-02 0.951439743 0.357429891 TCGA-63-5131-01A-01D-1438-02 0.941558074 0.611089828 TCGA-56-1622-01A-01D-0688-02 0.928625438 0.16117661 TCGA-66-2781-01A-01D-0847-02 0.908899352 0.220157914 TCGA-18-4083-01A-01D-1095-02 0.900456141 0.51774666 TCGA-34-2596-01A-01D-0847-02 0.899849349 0.350543557 TCGA-66-2727-01A-01D-1519-02 0.896139235 0.227232653 TCGA-21-1080-01A-01D-0688-02 0.883820488 0.12757737 TCGA-66-2770-01A-01D-0847-02 0.864222689 0.188760299 TCGA-39-5016-01A-01D-1438-02 0.856049676 0.40902012 TCGA-22-4591-01A-01D-1197-02 0.845532752 0.167368579 TCGA-66-2789-01A-01D-1519-02 0.844945836 0.219508016 TCGA-60-2712-01A-01D-0847-02 0.831263395 -0.100175624 TCGA-66-2791-01A-01D-1519-02 0.822695404 0.270957936 TCGA-63-5128-01A-01D-1438-02 0.813518713 0.24313238 TCGA-22-0944-01A-01D-0688-02 0.813077581 0.188181666 TCGA-22-4599-01A-01D-1438-02 0.809785019 0.203255081 TCGA-60-2698-01A-01D-0847-02 0.8006377 0.145971104 TCGA-46-3765-01A-01D-1519-02 0.76387353 0.19256726 TCGA-66-2758-01A-02D-0847-02 0.763650483 0.002371962 TCGA-21-1081-01A-01D-0688-02 0.762418572 -0.12127097 TCGA-33-4547-01A-01D-1197-02 0.762356628 0.485111894 TCGA-18-4086-01A-01D-1095-02 0.755390399 0.254487814 TCGA-51-4079-01A-01D-1095-02 0.727600537 0.205422245 TCGA-18-3411-01A-01D-1519-02 0.727341166 0.066148262 TCGA-60-2721-01A-01D-0847-02 0.722285959 0.168808612 TCGA-60-2723-01A-01D-0847-02 0.706051674 0.027250343 TCGA-66-2787-01A-01D-1519-02 0.70061763 0.089671013 TCGA-21-1071-01A-01D-0688-02 0.698736726 0.293609389 TCGA-39-5036-01A-01D-1438-02 0.696261172 0.193697305 TCGA-37-3789-01A-01D-1519-02 0.695183514 0.051141565 TCGA-22-4604-01A-01D-1197-02 0.69395205 0.416585747 TCGA-60-2695-01A-01D-0847-02 0.693301615 -0.082173186 TCGA-51-4081-01A-01D-1095-02 0.682521902 0.292386625 TCGA-18-3415-01A-01D-1519-02 0.676499109 0.1055001 TCGA-34-2604-01A-01D-0847-02 0.660094251 0.075599253 TCGA-60-2726-01A-01D-0847-02 0.65348341 0.08292669 TCGA-18-3417-01A-01D-1438-02 0.653276996 -0.044195948 TCGA-43-2578-01A-01D-0847-02 0.652882532 -0.040322814 TCGA-22-4595-01A-01D-1197-02 0.644311222 0.27166572 TCGA-60-2706-01A-01D-0847-02 0.638017605 0.050706174 TCGA-66-2768-01A-01D-0847-02 0.632335379 0.112001139 TCGA-66-2773-01A-01D-1197-02 0.62471198 0.114567332 TCGA-21-1070-01A-01D-0688-02 0.623159974 -0.078337898 TCGA-66-2780-01A-01D-0847-02 0.618105442 0.088393188 TCGA-66-2790-01A-01D-1519-02 0.615031352 0.018449061 TCGA-66-2757-01A-01D-0847-02 0.59263251 -0.118010071 TCGA-43-3920-01A-01D-1519-02 0.582182292 -0.150822369 TCGA-37-4141-01A-02D-1095-02 0.568361359 -0.100575403 TCGA-18-3421-01A-01D-1519-02 0.544960941 -0.212413743 TCGA-21-1079-01A-01D-0688-02 0.531020135 -0.276817077 TCGA-66-2763-01A-01D-0847-02 0.530164153 -0.183602116 TCGA-33-4582-01A-01D-1438-02 0.530046227 0.040314668 TCGA-66-2767-01A-01D-0847-02 0.511023324 0.009755971 TCGA-60-2707-01A-01D-0847-02 0.505327485 -0.163844431 TCGA-21-1076-01A-02D-0688-02 0.496927998 -0.141670876 TCGA-66-2793-01A-01D-1197-02 0.492870413 -0.021887857 TCGA-66-2755-01A-01D-0847-02 0.489218749 -0.21952555 TCGA-21-1076-01A-01D-0688-02 0.488223519 -0.071967552 TCGA-18-3406-01A-01D-1519-02 0.480044094 -0.11149447 TCGA-21-1083-01A-01D-0688-02 0.471358341 -0.184273661 TCGA-22-4607-01A-01D-1197-02 0.470017602 -0.113135269 TCGA-66-2778-01A-02D-0847-02 0.441110914 -0.077639426 TCGA-18-3407-01A-01D-1519-02 0.433642805 -0.064666393 TCGA-39-5035-01A-01D-1438-02 0.418977148 -0.089540098 TCGA-66-2769-01A-02D-0847-02 0.410076533 -0.263637078 TCGA-22-0940-01A-01D-0688-02 0.401604886 -0.11319591 TCGA-37-4132-01A-01D-1095-02 0.388484606 -0.248949888 TCGA-66-2753-01A-01D-1519-02 0.386893799 -0.238185387 TCGA-39-5029-01A-01D-1438-02 0.38395871 -0.244222889 TCGA-37-3792-01A-01D-1519-02 0.370885108 -0.182761258 TCGA-60-2708-01A-01D-0847-02 0.368570112 -0.293652411 TCGA-60-2724-01A-01D-0847-02 0.361855341 -0.066770906 TCGA-18-3414-01A-01D-1519-02 0.360809144 -0.219476071 TCGA-66-2771-01A-01D-1519-02 0.347546946 -0.392850213 TCGA-34-5241-01A-01D-1438-02 0.344685081 -0.187682163 TCGA-46-3766-01A-01D-1519-02 0.343810953 -0.367907727 TCGA-37-3783-01A-01D-1197-02 0.330931739 -0.177123657 TCGA-34-2608-01A-02D-0847-02 0.325608614 -0.31618433 TCGA-60-2725-01A-01D-1197-02 0.321996306 -0.192376957 TCGA-66-2734-01A-01D-1519-02 0.306615869 -0.09399024 TCGA-22-1016-01A-01D-0688-02 0.305048453 -0.391465614 TCGA-22-1002-01A-01D-0688-02 0.303128897 -0.167591967 TCGA-66-2765-01A-01D-0847-02 0.296506385 -0.401217722 TCGA-66-2782-01A-01D-0847-02 0.295203831 -0.288543689 TCGA-66-2756-01A-01D-0847-02 0.281245322 -0.421346359 TCGA-18-3409-01A-01D-1519-02 0.2728122 -0.472839803 TCGA-46-3767-01A-01D-1519-02 0.265199606 -0.318685504 TCGA-18-3410-01A-01D-1519-02 0.2342138 -0.609012511 TCGA-37-4130-01A-01D-1095-02 0.219969359 -0.422997986 TCGA-66-2786-01A-01D-0847-02 0.217717758 -0.372524144 TCGA-39-5030-01A-01D-1438-02 0.208782891 -0.4064781 TCGA-33-4589-01A-01D-1438-02 0.205278309 -0.391176383 TCGA-60-2715-01A-01D-0847-02 0.197450813 -0.302316205 TCGA-66-2744-01A-01D-1519-02 0.171956199 -0.5270376 TCGA-66-2788-01A-01D-1519-02 0.161902479 -0.428088046 TCGA-34-2609-01A-01D-0847-02 0.148441051 -0.490158688 TCGA-60-2714-01A-01D-0847-02 0.12853145 -0.588466681 TCGA-22-1012-01A-01D-0688-02 0.127978327 -0.434537312 TCGA-43-2576-01A-01D-0847-02 0.120382746 -0.592647747 TCGA-22-1011-01A-01D-0688-02 0.116915628 -0.419392048 TCGA-22-1000-01A-01D-0688-02 0.111993679 -0.446323769 TCGA-33-4566-01A-01D-1438-02 0.106779156 -0.546673177 TCGA-60-2720-01A-01D-0847-02 0.073534212 -0.511118337 TCGA-66-2785-01A-01D-0847-02 0.066517276 -0.703912485 TCGA-60-2696-01A-01D-0847-02 0.063369377 -0.479589145 TCGA-22-1005-01A-01D-0688-02 0.047210817 -0.600239724 TCGA-22-4596-01A-01D-1197-02 0.023670756 -0.685480118 TCGA-43-2581-01A-01D-0847-02 0.008924457 -0.58745021 TCGA-39-5034-01A-01D-1438-02 0.005981774 -0.52587251 TCGA-22-1017-01A-01D-0688-02 -0.001155049 -0.736919214 TCGA-39-5011-01A-01D-1438-02 -0.001772498 -0.806844988 TCGA-60-2716-01A-01D-0847-02 -0.027085933 -0.559398488 TCGA-22-4594-01A-01D-1197-02 -0.045296013 -0.749968704 TCGA-21-1078-01A-01D-0688-02 -0.053945928 -0.652716608 TCGA-37-4129-01A-01D-1095-02 -0.317700509 -0.993853911 Table S2: The corr_exp_amp and corr_exp_ave for 164 genes in the 3q26-39 regions corr_exp_amp: correlation between gene expression and amplification score corr_exp_ave: correlation between gene expression and average expression score GeneSymbol corr_exp_amp corr_exp_ave ZNF639 0.866144975 0.857065482 ACTL6A 0.819469789 0.8188957 DCUN1D1 0.788696586 0.817472827 TBL1XR1 0.773925464 0.801221988 ATP11B 0.769411355 0.807543791 ABCC5 0.759481646 0.792085095 DNAJC19 0.759117715 0.780099287 PIK3CA 0.757790135 0.827591451 POLR2H 0.75478813 0.761675484 ECT2 0.753015249 0.752324975 SENP2 0.748075052 0.837060495 B3GNT5 0.735574483 0.768855134 MAGEF1 0.732929421 0.776221817 ALG3 0.727718205 0.73327114 PARL 0.727687606 0.738720036 SOX2 0.723977764 0.778379681 MRPL47 0.721611684 0.751153302 RFC4 0.721109357 0.705868684 FXR1 0.718918937 0.780988798 MFN1 0.703526801 0.744270006 C3orf21 0.698033065 0.734070763 EIF2B5 0.690662183 0.720118372 PIGX 0.686059227 0.757813408 YEATS2 0.682279813 0.731070469 DLG1 0.675627119 0.743846274 CLCN2 0.673323355 0.689811303 NDUFB5 0.672933795 0.688813483 NCBP2 0.672847232 0.731920267 PSMD2 0.669983623 0.732325204 KLHL24 0.669637358 0.671017909 DVL3 0.669091735 0.698233567 LSG1 0.667620633 0.747446288 FAM131A 0.66332522 0.691146306 WDR53 0.659015576 0.691868452
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