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DNA Barcoding Reveals Limited Accuracy of Identifications Based on Folk Taxonomy
DNA Barcoding Reveals Limited Accuracy of Identifications Based on Folk Taxonomy Hugo J. de Boer1,2,3., Abderrahim Ouarghidi4,5., Gary Martin5, Abdelaziz Abbad4, Anneleen Kool3* 1 Department of Organismal Biology, Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden, 2 Naturalis Biodiversity Center, Leiden, The Netherlands, 3 Natural History Museum, University of Oslo, Oslo, Norway, 4 Faculty of Science Semlalia, Cadi Ayyad University, Marrakech, Morocco, 5 Global Diversity Foundation, Marrakech, Morocco Abstract Background: The trade of plant roots as traditional medicine is an important source of income for many people around the world. Destructive harvesting practices threaten the existence of some plant species. Harvesters of medicinal roots identify the collected species according to their own folk taxonomies, but once the dried or powdered roots enter the chain of commercialization, accurate identification becomes more challenging. Methodology: A survey of morphological diversity among four root products traded in the medina of Marrakech was conducted. Fifty-one root samples were selected for molecular identification using DNA barcoding using three markers, trnH-psbA, rpoC1, and ITS. Sequences were searched using BLAST against a tailored reference database of Moroccan medicinal plants and their closest relatives submitted to NCBI GenBank. Principal Findings: Combining psbA-trnH, rpoC1, and ITS allowed the majority of the market samples to be identified to species level. Few of the species level barcoding identifications matched the scientific names given in the literature, including the most authoritative and widely cited pharmacopeia. Conclusions/Significance: The four root complexes selected from the medicinal plant products traded in Marrakech all comprise more than one species, but not those previously asserted. -
Listado De Todas Las Plantas Que Tengo Fotografiadas Ordenado Por Familias Según El Sistema APG III (Última Actualización: 2 De Septiembre De 2021)
Listado de todas las plantas que tengo fotografiadas ordenado por familias según el sistema APG III (última actualización: 2 de Septiembre de 2021) GÉNERO Y ESPECIE FAMILIA SUBFAMILIA GÉNERO Y ESPECIE FAMILIA SUBFAMILIA Acanthus hungaricus Acanthaceae Acanthoideae Metarungia longistrobus Acanthaceae Acanthoideae Acanthus mollis Acanthaceae Acanthoideae Odontonema callistachyum Acanthaceae Acanthoideae Acanthus spinosus Acanthaceae Acanthoideae Odontonema cuspidatum Acanthaceae Acanthoideae Aphelandra flava Acanthaceae Acanthoideae Odontonema tubaeforme Acanthaceae Acanthoideae Aphelandra sinclairiana Acanthaceae Acanthoideae Pachystachys lutea Acanthaceae Acanthoideae Aphelandra squarrosa Acanthaceae Acanthoideae Pachystachys spicata Acanthaceae Acanthoideae Asystasia gangetica Acanthaceae Acanthoideae Peristrophe speciosa Acanthaceae Acanthoideae Barleria cristata Acanthaceae Acanthoideae Phaulopsis pulchella Acanthaceae Acanthoideae Barleria obtusa Acanthaceae Acanthoideae Pseuderanthemum carruthersii ‘Rubrum’ Acanthaceae Acanthoideae Barleria repens Acanthaceae Acanthoideae Pseuderanthemum carruthersii var. atropurpureum Acanthaceae Acanthoideae Brillantaisia lamium Acanthaceae Acanthoideae Pseuderanthemum carruthersii var. reticulatum Acanthaceae Acanthoideae Brillantaisia owariensis Acanthaceae Acanthoideae Pseuderanthemum laxiflorum Acanthaceae Acanthoideae Brillantaisia ulugurica Acanthaceae Acanthoideae Pseuderanthemum laxiflorum ‘Purple Dazzler’ Acanthaceae Acanthoideae Crossandra infundibuliformis Acanthaceae Acanthoideae Ruellia -
Gathered Food Plants in the Mountains
34063_Rivera.qxd 7/2/07 2:03 PM Page 1 Gathered Food Plants in the Mountains of Castilla–La Mancha (Spain): Ethnobotany and Multivariate Analysis1 Diego Rivera*,2, Concepción Obón3, Cristina Inocencio3, Michael Heinrich4, Alonso Verde2, José Fajardo2, and José Antonio Palazón5 2 Departamento de Biología Vegetal, Facultad de Biología, Universidad de Murcia, 30100 Murcia, Spain 3 Departamento de Biología Aplicada, EPSO, Universidad Miguel Hernández, 03312 Orihuela, Alicante, Spain 4 Centre for Pharmacognosy and Phytotherapy, The School of Pharmacy, Univ. London, 29–39 Brunswick Sq. London, WC1N 1AX, United Kingdom 5 Departamento de Ecología e Hidrología, Facultad de Biología, Universidad de Murcia, 30100 Murcia, Spain * Corresponding author: Departamento de Biología Vegetal, Facultad de Biología, Universidad de Murcia, 30100 Murcia, Spain; e-mail: [email protected] GATHERED FOOD PLANTS IN THE MOUNTAINS OF CASTILLA–LA MANCHA (SPAIN): ETHNOBOTANY AND MULTIVARIATE ANALYSIS. Gathered food plants (GFPs) (wild and weeds) are crucial for under- standing traditional Mediterranean diets. Combining open interviews and free–listing ques- tionnaires, we identified 215 GFP items, i.e., 53 fungi and 162 from 154 vascular plant species. The variation in frequency and in salience among the items follows a rectangular hyperbola. Highly salient species were Silene vulgaris (Moench) Garcke, Scolymus hispani- cus L., and Pleurotus eryngii (DC.: Fr.) Quélet. Salience and frequency showed no correlation with the expected health benefits of each species. Regional frequency in the Mediter- ranean and local frequency are directly related. Thus, local food plants are much less “local” than expected. Different types of culinary preparations provide the most information in the cluster analysis of variables. -
La Taxonomía, Por Antonio 9 G
Biodiversidad Aproximación a la diversidad botánica y zoológica de España José Luis Viejo Montesinos (Ed.) MeMorias de la real sociedad española de Historia Natural Segunda época, Tomo IX, año 2011 ISSN: 1132-0869 ISBN: 978-84-936677-6-4 MeMorias de la real sociedad española de Historia Natural Las Memorias de la Real Sociedad Española de Historia Natural constituyen una publicación no periódica que recogerá estudios monográficos o de síntesis sobre cualquier materia de las Ciencias Naturales. Continuará, por tanto, la tradición inaugurada en 1903 con la primera serie del mismo título y que dejó de publicarse en 1935. La Junta Directiva analizará las propuestas presentadas para nuevos volúmenes o propondrá tema y responsable de la edición de cada nuevo tomo. Cada número tendrá título propio, bajo el encabezado general de Memorias de la Real Sociedad Española de Historia Natural, y se numerará correlativamente a partir del número 1, indicando a continuación 2ª época. Correspondencia: Real Sociedad Española de Historia Natural Facultades de Biología y Geología. Universidad Complutense de Madrid. 28040 Madrid e-mail: [email protected] Página Web: www.historianatural.org © Real Sociedad Española de Historia Natural ISSN: 1132-0869 ISBN: 978-84-936677-6-4 DL: XXXXXXXXX Fecha de publicación: 28 de febrero de 2011 Composición: Alfredo Baratas Díaz Imprime: Gráficas Varona, S.A. Polígono “El Montalvo”, parcela 49. 37008 Salamanca MEMORIAS DE LA REAL SOCIEDAD ESPAÑOLA DE HISTORIA NATURAL Segunda época, Tomo IX, año 2011 Biodiversidad Aproximación a la diversidad botánica y zoológica de España. José Luis Viejo Montesinos (Ed.) REAL SOCIEDAD ESPAÑOLA DE HISTORIA NATURAL Facultades de Biología y Geología Universidad Complutense de Madrid 28040 - Madrid 2011 ISSN: 1132-0869 ISBN: 978-84-936677-6-4 Índice Presentación, por José Luis Viejo Montesinos 7 Una disciplina científi ca en la encrucijada: la Taxonomía, por Antonio 9 G. -
Title: Occurrence of Temporarily-Introduced Alien Plant Species (Ephemerophytes) in Poland - Scale and Assessment of the Phenomenon
Title: Occurrence of temporarily-introduced alien plant species (ephemerophytes) in Poland - scale and assessment of the phenomenon Author: Alina Urbisz Citation style: Urbisz Alina. (2011). Occurrence of temporarily-introduced alien plant species (ephemerophytes) in Poland - scale and assessment of the phenomenon. Katowice : Wydawnictwo Uniwersytetu Śląskiego. Cena 26 z³ (+ VAT) ISSN 0208-6336 Wydawnictwo Uniwersytetu Œl¹skiego Katowice 2011 ISBN 978-83-226-2053-3 Occurrence of temporarily-introduced alien plant species (ephemerophytes) in Poland – scale and assessment of the phenomenon 1 NR 2897 2 Alina Urbisz Occurrence of temporarily-introduced alien plant species (ephemerophytes) in Poland – scale and assessment of the phenomenon Wydawnictwo Uniwersytetu Śląskiego Katowice 2011 3 Redaktor serii: Biologia Iwona Szarejko Recenzent Adam Zając Publikacja będzie dostępna — po wyczerpaniu nakładu — w wersji internetowej: Śląska Biblioteka Cyfrowa 4 www.sbc.org.pl Contents Acknowledgments .................. 7 Introduction .................... 9 1. Aim of the study .................. 11 2. Definition of the term “ephemerophyte” and criteria for classifying a species into this group of plants ............ 13 3. Position of ephemerophytes in the classification of synanthropic plants 15 4. Species excluded from the present study .......... 19 5. Material and methods ................ 25 5.1. The boundaries of the research area ........... 25 5.2. List of species ................. 25 5.3. Sources of data ................. 26 5.3.1. Literature ................. 26 5.3.2. Herbarium materials .............. 27 5.3.3. Unpublished data ............... 27 5.4. Collection of records and list of localities ......... 27 5.5. Selected of information on species ........... 28 6. Results ..................... 31 6.1. Systematic classification ............... 31 6.2. Number of localities ................ 33 6.3. Dynamics of occurrence .............. -
Antioxidant, Α-Glucosidase, and Nitric Oxide Inhibitory Activities of Six
molecules Article Antioxidant, α-Glucosidase, and Nitric Oxide Inhibitory Activities of Six Algerian Traditional Medicinal Plant Extracts and 1H-NMR-Based Metabolomics Study of the Active Extract Khaoula Hellal 1, M. Maulidiani 2, Intan Safinar Ismail 3,4 , Chin Ping Tan 5 and Faridah Abas 1,3,* 1 Department of Food Science, Faculty of Food Science and Technology, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia; [email protected] 2 School of Fundamental Science, Universiti Malaysia Terengganu, Kuala Nerus 21030, Terengganu, Malaysia; [email protected] 3 Laboratory of Natural Products, Institute of Bioscience, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia; safi[email protected] 4 Department of Chemistry, Faculty of Science, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia 5 Department of Food Technology, Faculty of Food Science and Technology, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia; [email protected] * Correspondence: [email protected] Received: 6 November 2019; Accepted: 30 January 2020; Published: 10 March 2020 Abstract: Claims of effective therapy against diabetes using plants including Peganum harmala L., Zygophyllum album, Anacyclus valentinus L., Ammodaucus leucotrichus, Lupinus albus, and Marrubium vulgare in Algerian empirical medicine prompted our interest in evaluating their antidiabetic activity by screening their free radical scavenging (DPPH), α-glucosidase, and nitric oxide (NO) inhibitory activities as well as the total phenolic content (TPC). Extracts of the selected plants were prepared using different ratios of ethanol (0, 50, 80, and 100%). In this study, 100%, and 80% ethanol extracts of L. albus were found to be the most potent, in inhibiting α-glucosidase activity with IC50 values of 6.45 and 8.66 µg/mL, respectively. -
1 the Mendelian Inheritance of Gynomonoecy: Insights from Anacyclus Hybridizing Species
Manuscript Click here to access/download;Manuscript;renamed_e47b4.docx 1 The Mendelian inheritance of gynomonoecy: insights from Anacyclus hybridizing species 2 3 Inés Álvarez1, 3, A. Bruno Agudo1, Alberto Herrero1, and Rubén Torices2 4 5 1 Departamento de Biodiversidad y Conservación, Real Jardín Botánico (RJB), Consejo Superior 6 de Investigaciones Científicas (CSIC), Plaza de Murillo 2, 28014-Madrid, Spain. 7 2Área de Biodiversidad y Conservación, Universidad Rey Juan Carlos, C/ Tulipán s/n, 28933- 8 Móstoles, Madrid, Spain. 9 3For correspondence: [email protected] 10 11 Manuscript received _____________________; revision accepted _____________________. 12 13 Short title: Gynomonoecy inheritance 1 14 ABSTRACT 15 Premise of the study Gynomonoecy is an infrequent sexual system in 16 Angiosperms, although widely represented within the Asteraceae family. 17 Currently, the hypothesis of two nuclear loci that control gynomonoecy is the most 18 accepted. However, the genic interactions are still uncertain. Anacyclus clavatus, 19 A. homogamos and A. valentinus differ in their sexual system and floral traits. 20 Here, we investigate the inheritance of gynomonoecy in this model system to 21 understand its prevalence in the family. 22 Methods We selected six natural populations (two per species) for intra- and 23 interspecific experimental crosses, and generated a total of 1123 individuals from 24 F1, F2, and backcrosses for sexual system characterization. The frequency of 25 gynomonoecy observed for each cross was tested to fit different possible 26 hypotheses of genic interaction. Additionally, the breeding system and the degree 27 of reproductive isolation between these species were assessed. 28 Key Results Complementary epistasis, in which two dominant alleles are required 29 for trait expression, explained the frequencies of gynomonoecy observed across all 30 generations. -
The Type Method: an Introduction
The type method: an introduction John McNeill (Royal Botanic Garden, Edinburgh & Royal Ontario Museum, Toronto) First some history • The origins of rules of nomenclature • The adoption of the type method and what preceded it International rules on plant names A system of naming plants for scientific communication must be international in scope, and must provide consistency in the application of names. It must also be accepted by most, if not all, members of the scientific community. These criteria led, almost inevitably, to International Congresses being the venue at which agreement on a system of scientific nomenclature for plants was sought. The first such attempt was at a “Congrès International de Botanique” held by the Societé Botanique de France in Paris in 1867 at which Alphonse de Candolle’s* Lois de la nomenclature botanique was discussed and adopted. * “A. DC.” (1806–1893), son of “DC.” (1778–1841) Modern rules on plant names: the International Code of Botanical Nomenclature (ICBN) The modern successor to Candolle’s Lois is the International Code of Botanical Nomenclature (ICBN), the most recent published edition of which appeared in 2006 and was based on the decisions taken at the XVII International Botanical Congress held in Vienna, Austria in July 2005. McNeill, J., Barrie, F.R., Burdet, H.M., Demoulin, V., Hawksworth, D.L., Marhold, K., Nicolson, D.H., Prado, J., Silva, P.C., Skog, J.E., Wiersema, J.H., & Turland, N.J. (eds.) 2006. International Code of Botanical Nomenclature (Vienna Code) adopted by the Seventeenth International Botanical Congress Vienna, Austria, July 2005. A.R.G. Gantner Verlag, Ruggell, Liechtenstein. -
Architectural Traits Constrain the Evolution of Unisexual Flowers and Sexual Segregation Within Inflorescences: an Interspecific Approach
bioRxiv preprint doi: https://doi.org/10.1101/356147; this version posted February 15, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Open Access RESEARCH ARTICLE ArCHITECTURAL TRAITS CONSTRAIN THE EVOLUTION OF UNISEXUAL FLOWERS AND SEXUAL SEGREGATION WITHIN INFLORescences: AN INTERSPECIFIC APPROACH Rubén Torices, Ana Afonso, Arne A. Anderberg, José M. Gómez, MarCOS MéndeZ Cite as: TORICES R, Afonso A, AnderberG AA, GómeZ JM, AND MéndeZ M. (2019). ArCHITECTURAL TRAITS CONSTRAIN THE EVOLUTION OF UNISEXUAL FLOWERS AND SEXUAL SEGREGATION WITHIN INFLORescences: AN INTERSPECIFIC APPRoach. bioRxiv 236646, VER 3 peer-rEVIEWED AND RECOMMENDED BY PCI Evol Biol. DOI: 10.1101/356147 Peer-rEVIEWED AND RECOMMENDED BY Peer Community IN Evolutionary Biology Recommendation DOI: 10.24072/pci.evolbiol.100069 Recommender: Juan ArrOYO Based ON REVIEWS By: ThrEE ANONYMOUS REVIEWERS PEER COMMUNITY IN EVOLUTIONARY BIOLOGY bioRxiv preprint doi: https://doi.org/10.1101/356147; this version posted February 15, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Architectural traits constrain the RESEARCH ARTICLE evolution of unisexual flowers and sexual segregation within inflorescences: an intersPecific apProach Cite as: Torices R, Afonso A, Anderberg AA, Gómez JM, and Méndez M. (2019). Architectural traits constrain the evolution of unisexual flowers and sexual Rubén Torices1,2,3, Ana Afonso4, Arne A. -
01.JPM TESI.Pdf
UNIVERSITAT DE BARCELONA FACULTAT DE FARMÀCIA DEPARTAMENT DE PRODUCTES NATURALS, BIOLOGIA VEGETAL I EDAFOLOGIA LABORATORI DE BOTÀNICA Sistemàtica i filogènia d’Artemisia i gèneres relacionats: una aproximació citogenètica i molecular amb especial èmfasi en el subgènere Dracunculus Jaume Pellicer Moscardó Barcelona, 2009 UNIVERSITAT DE BARCELONA FACULTAT DE FARMÀCIA DEPARTAMENT DE PRODUCTES NATURALS, BIOLOGIA VEGETAL I EDAFOLOGIA PROGRAMA DE DOCTORAT: MEDICAMENTS, ALIMENTACIÓ I SALUT BIENNI 2004-2006 Sistemàtica i filogènia d’Artemisia i gèneres relacionats: una aproximació citogenètica i molecular amb especial èmfasi en el subgènere Dracunculus Memòria presentada per Jaume Pellicer Moscardó per a optar al títol de Doctor per la Universitat de Barcelona Dr. Joan Vallès Xirau Dra. Teresa Garnatje Roca Jaume Pellicer Moscardó Barcelona, 2009 Aquest treball ha estat desenvolupat gràcies a una beca predoctoral FPI i tres borses de viatge per a estades breus concedides pel Ministeri de Ciència i Innovació. El finançament de les recerques ha anat a càrrec dels projectes dels Ministeris de Ciència i Tecnologia i Ciència i Innovació CGL2004-04563-C02- 02/BOS, CGL2007-64839-C02-01-01/BOS i CGL2007-64839-C02-01- 02/BOS, així com dels suports de la Generalitat de Catalunya a Grups de Recerca de Catalunya 2005/SGR/00344 i 2009/SGR/00439. Als meus pares i a la meva germana, naturalment Bé haguera estat trobar-nos a l’alçada impossible de la poesia de les nostres fonts, rierols i senderes, de la prosa plena i saborosa dels nostres vells màrgens, obagues i marjals, del ritme suau i primitiu dels nostres platjars i dunars, de la rudesa i cruor dels nostres cingles i runars, dels clímax dels nostres cims i abims. -
DEPARTAMENTO DE CIÊNCIAS DA VIDA Pollinator Preference in A
2014 DEPARTAMENTO DE CIÊNCIAS DA VIDA FACULDADE DE CIÊNCIAS E TECNOLOGIA UNIVERSIDADE DE COIMBRA 2014 2014 DE PARTAMENTO DE CIÊNCIAS DA VIDA FACULDADE DE CIÊNCIAS E TECNOLOGIA UNIVERSIDADE DE COIMBRA Pollinator preference in a hybrid zone between two generalist plant species. Pollinator preference in a hybrid zone between two generalist plant species. Pollinator preferencein a hybrid zone between two generalist plant species. plant generalist two between zone hybrid a preferencein Pollinator Pollinator preferencein a hybrid zone between two generalist plant species. plant generalist two between zone hybrid a preferencein Pollinator José Cerca de Oliveira 2014 José Cerca de Oliveira José Cerca de Oliveira de Cerca José 2014 José Cerca de Oliveira de Cerca José DEPARTAMENTO DE CIÊNCIAS DA VIDA FACULDADE DE CIÊNCIAS E TECNOLOGIA UNIVERSIDADE DE COIMBRA Pollinator preference in a hybrid zone between two generalist plant species. Dissertação apresentada à Universidade de Coimbra para cumprimento dos requisitos necessários à obtenção do grau de Mestre em Ecologia, realizada sob a orientação científica do Professor Doutor João Loureiro (Universidade de Coimbra), da Doutora Sílvia Castro (Universidade de Coimbra) e do Doutor Rubén Torices (Universidade de Coimbra). José Cerca de Oliveira 2014 This study was supported by the CGL2010-18039 Project from Spanish Ministry of Science and Innovation. i Ao Nuno Lopes, “De vez em quando a eternidade sai do teu interior e a contingência substitui-a com o seu pânico. São os amigos e conhecidos que vão desaparecendo e deixam um vazio irrespirável. Não é a sua ‘falta’ que falta, é o desmentido de que tu não morres.” Virgílio Ferreira ii À minha família, namorada, amigos, orientadores e a todos os que directamente ou indirectamente contribuíram na minha formação ou na realização deste trabalho. -
Supplementary Information for Vincent Manzanilla1, Irene Teixidor
Supplementary Information for USING TARGET CAPTURE TO ADDRESS CONSERVATION CHALLENGES: POPULATION- LEVEL TRACKING OF A GLOBALLY-TRADED HERBAL MEDICINE Vincent Manzanilla1, Irene Teixidor-Toneu1, Gary J. Martin2, Peter M. Hollingsworth3, Hugo J. de Boer1, Anneleen Kool1 1 Natural History Museum, University of Oslo, Sars gate 1, 0562 Oslo, Norway 2 Global Diversity Foundation, 37 St. Margarets Street, Canterbury, Kent CT1 2TU, England 3 Royal Botanic Garden Edinburgh, Inverleith Row, Edinburgh EH3 5LR, Scotland Corresponding author: Vincent Manzanilla Email: [email protected] 1 SI MATERIAL AND METHODS ....................................................................................................................... 3 Morphological estimation of adulteration ................................................................................................... 3 Marker design, skimming data and denovo assembly .................................................................................. 3 Nuclear genes filtering ................................................................................................................................. 4 Results .......................................................................................................................................................... 5 SI FIGURE AND TABLE CAPTIONS ............................................................................................................... 6 SI REFERENCES ................................................................................................................................................