Architecture in Living Structure

Total Page:16

File Type:pdf, Size:1020Kb

Architecture in Living Structure Architecture in Living Structure Edited by G.A. Zweers and P. Dullemeijer Reprinted from Acta Biotheoretica Volume 34, Nos. 2-4 1985 MARTINUS NIJHOFF/DR W. JUNK PUBLISHERS ,L a member of the KLUWER ACADEMIC PUBLISHERS GROUP II DORDRECHT I BOSTON I LANCASTER 'liliiii Distributors for the United States and Canada: Kluwer Academic Publishers, 190 Old Derby Street, Hingham, MA 02043, USA for the UK and Ireland: Kluwer Academic Publishers, MTP Press Limited, Falcon House, Queen Square, Lancaster LA1 1RN, UK for all other countries: Kluwer Academic Publishers Group, Distribution Center, P.O. Box 322, 3300 AH Dordrecht, The Netherlands Library of Congress Cataloging In Publication Data Main entry under title: Architecture 1n living structure. Proceedings of • symposium held 3/15-17/84 in LochmUhle, AU5senste lIe der Senckenbergischen Naturforschenden Gesellschaft, Frankfurt am Main. lncludes bibliographies. 1. Morphology (Animals)--Congresses. L Zweers. G. A. II. Dullemeijer, P. III. Senckenbergische Naturforschende Gesellschaft. Aussenstelle LochmUhle. QL799.A73 1985 591.4 85-21492 ISBN-13: 978-94-010-8787-2 ISBN-13: 978-94-010-8787-2 e-ISBN-13: 978-94-009-5169-3 001: 10.1007/978-94-009-5169-3 Copyright © 1985 by Martinus Nijhoff/Dr W. Junk Publishers, Dordrecht. Softcover reprint of the hardcover 1st edition 1985 All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted in any form or by any means, mechanical, photocopying, recording, or otherwise, without the prior writ­ ten permission of the publishers, Martinus NijhofflDr W. Junk Publishers, P.O. Box 163, 3300 AD Dordrecht, The Netherlands. [3] 109 Proceedings of a symposium on Architecture in Living Structure The primary goal of the symposium was to arrive at a comparative analysis of various methodological pathways. The symposium was organized by W.F. Gutmann, P. Dullemeijer and G.A. Zweers and was held from March 15-17, 1984 in the Lochmuhle, Aussenstelle der Senckenbergischen Naturforschenden Gesellschaft, Frankfurt am Main. This issue is edited by G.A. Zweers and P. Dullemeijer. Contributions to the symposium R. McNeill Alexander: The legs of ostriches (Struthio) and moas [59] 165 (Pachyornis) . J. Bereiter-Hahn: Architecture of tissue ce11s. The structural basis [33] 139 which determines shape and locomotion of cells. Tj. de Cock Buning: Qualitative and quantitative explanation of the [87] 193 forms of heat sensitive organs in snakes. Tj. de Cock Buning, E. Otten & P. Dullemeijer: Some methodological [171] 227 remarks. P. Du11emeijer: Diversity of functional morphological explanation. [5] III M. Grasshoff: On the reconstruction of phylogenetic transformations: [43] 149 The origin of the arthropods. U. An der Heiden, G. Roth & H. Schwegler: Principles of self- [19] 125 generation and self-maintenance. J.W.M. Osse: Jaw protrusion, an optimization of the feeding apparatus [113] 119 of Teleosts? E. Otten: Proportions of the jaw mechanism of cichlid fishes: changes [101] 107 and their meaning. D. S. Peters: Mechanical constraints canalizing the evolutionary [51] 157 transformation of tetrapod limbs. W.E. Reif, R.D.K. Thomas & M.S. Fischer: Constructional morphology: [127] 233 the analysis of contraints in evolution. G. Roth & D.B. Wake: Trends in the functional morphology and sensori- [69] 175 motor control of feeding behavior in salamanders: an example of the role of internal dynamics in evolution. G.A. Zweers: Greek classicism in living structure? Some deductive [143] 249 pathways in animal morphology. Additional symposium presentations W.J. Bock: Parts and wholes in morphology: a reductionistic and inte­ grative approach to holism. W.J. Bock: Adaptations and other structural components to fitness. W.F. Gutmann: Organisms as energy converting systems. Symposium participants R. McNeill Alexander, J. Bereiter-Hahn, J.C. Vanden Berge, W.J. Bock, Tj. de Cock Buning, P. Dullemeijer, A. Grosse-Lohmann, M. Grasshoff, W.F. Gutmann, U. An der Heiden, W. Maier, J.W.M. Osse, E. Otten, D.S. Peters, G. Rehkamper, W.E. Reif, E. Reisinger, G. Roth, K. Vogel, M. Weingarten, E. Zeiske, U. Zeller, G.A. Zweers. Page numbers in breckets refer to pagination of book edition DIVERSITY OF FUNCTIONAL MORPHOLOGICAL EXPLANATION PIETER DULLEMEIJER Zoologisch Laboratorium, Rijksuniversiteit Leiden, The Netherlands An introduction to the 19th Lochmuhle conference on 'Architecture in living structure', organized by P. Dullemeijer, W.F. Gutmann and G.A. Zweers, held from March 15-17, 1984 in the Aussenstelle des Forschungs­ instituts Senckenberg der Senckenbergischen Naturforschenden Gesellschaft, Frankfurt am Main. 1. INTRODUCTION Although functional morphologists form a minority group amongst biologists, there is, among them, a wide diversity of opinion in approach, aim, attitude and procedure, resulting in controversial questions and answers. This Lochmuhle conference was organized to elucidate these differences with the aim to obtain a soil for a mutual understanding. A first pre­ requisite to reach this aim is an analysis of the various motives to do functional morphology and the applied methodologies. Therefore the participants were asked to emphasize the following aspects: 1. to indicate the aspects intended to be explained in a functional morphological case study; 2. to clarify the type of explanation; 3. to describe the subsequent methodological steps; 4. to focus on the following questions: a. how the conclusion depends on the first step of abstraction; b. how the conclusion changes if the selected part is considered a member of an integrated wider system; c. how the conclusion and the procedure changes when temporal aspects, such as ontogeny and evolution, are introduced. 112 [6] .-----:-------~--- ,7....:,,-------- , , , , \ ............ " ',-----'-, ....,::.---­ - ----;;? , " " ". Figure 1. Diagram of the bony elements in a viperid snake. Drawn lines: opened mouth; stippled lines: closed mouth. be, braincase; ec, ectopterygoid; lj, lower jaw; m, maxilla; pf, poison fang; pt, pterygoid; vc, vertebral column. 1.1. An example As an introduction I shall demonstrate the various possibilities of explanations on a very simple, almost classical example, rather than present an abstract discourse on philosophy, procedure and science theory [5]. There is a small bone in the upper jaw of a viperid snake (viper, rattlesnake), the ectopterygoid, which transfers the force and movement of the protractor and levator pterygoid muscles to the maxilla (fig. 1). As a result the latter is rotated so that the poison fang is erected. The ectopterygoid is retracted by the adductor pterygoideus muscle. This mediation of protractor and retractor movement during strike and swallowing is its function, its biological role, in a total chain and pattern of structures and movements. To fulfil this role the bone has to perform certain activities; one of them is to resist the strain put on it. Evenly distributed strain resistance of a specified bone is obtained by a specific shape, given the kind of material. This statement is reasonable in view of general experience from engineering science, but it needs of course an accurate analysis in each particular case. This analysis is provided by the deductive method, by which the shape is deduced from the functional [7) 113 FORCES IN A HORIZONTAL. PLANE • r===~:: u _____ - -j 1 FORCES IN A VERTICAL PLANE ----.-~ + ~- -----~ \;______ .-====\=---,_/=::::::::::::::J ~ ~L:=-==---:=---=-==----, \ / 7~~' ~~ J:,~ Figure 2. Mechanical model for the explanation of the shape of the ecto­ pterygoid in Vipera berus. Left row the construction of the model for the activities of the muscles in retraction (a) and protraction (b) in the horizontal plane. In (c) the necessary shape for resisting the bending and compression for the retractor (m.adductor pterygoideus), in (d) that for the protractors (m.protractor et levator). As both systems work alternately, in the addition both figures can overlap (d). In (f), (g) and (h) the same in the vertical plane. Combining (e) and (h) results in the three-dimensional model (i), which is compared to the actual shape represented by cross-sections. demands by means of a general theory (fig.2). In this deduction the following steps are taken (6). I. Of all functional demands the resistance against muscle force is qelected. 2. The position and the length of the ectopterygoid in the construction is taken as a given feature. 3. The type of construction is determined. 4. It is supposed that the elasticity of bone is known and that the material is evenly distributed. 5. It is supposed that the laws of static mechanics are applicable. 6. A model of the shape is made by applying the principle of optimal design. 7. The model of the shape is compared to the actual shape; the model is accepted or refuted. 8. If accepted it is concluded that the shape is explained from the functional demand (i.e., the activity of the bone) by means of the theory of statics under the mentioned boundary conditions. In formula S = f(A) in which S = shape, A = activity and f the explaining theory. This is the general deductive-nomological formula of Hempel and 114 [8] others [9]. In Popper's system the falsification of the models is emphasized [12] , whereas in other systems confirmation is accepted, as is common in the majority of natural sciences. 2. TYPES OF EXPLANATION If we now generalize this formula in Hempel's sense as y = f(x), in which y is the phenomenon to be explained (the explanandum) and f(x), the explanans, of which f
Recommended publications
  • Table S1.Xlsx
    Bone type Bone type Taxonomy Order/series Family Valid binomial Outdated binomial Notes Reference(s) (skeletal bone) (scales) Actinopterygii Incertae sedis Incertae sedis Incertae sedis †Birgeria stensioei cellular this study †Birgeria groenlandica cellular Ørvig, 1978 †Eurynotus crenatus cellular Goodrich, 1907; Schultze, 2016 †Mimipiscis toombsi †Mimia toombsi cellular Richter & Smith, 1995 †Moythomasia sp. cellular cellular Sire et al., 2009; Schultze, 2016 †Cheirolepidiformes †Cheirolepididae †Cheirolepis canadensis cellular cellular Goodrich, 1907; Sire et al., 2009; Zylberberg et al., 2016; Meunier et al. 2018a; this study Cladistia Polypteriformes Polypteridae †Bawitius sp. cellular Meunier et al., 2016 †Dajetella sudamericana cellular cellular Gayet & Meunier, 1992 Erpetoichthys calabaricus Calamoichthys sp. cellular Moss, 1961a; this study †Pollia suarezi cellular cellular Meunier & Gayet, 1996 Polypterus bichir cellular cellular Kölliker, 1859; Stéphan, 1900; Goodrich, 1907; Ørvig, 1978 Polypterus delhezi cellular this study Polypterus ornatipinnis cellular Totland et al., 2011 Polypterus senegalus cellular Sire et al., 2009 Polypterus sp. cellular Moss, 1961a †Scanilepis sp. cellular Sire et al., 2009 †Scanilepis dubia cellular cellular Ørvig, 1978 †Saurichthyiformes †Saurichthyidae †Saurichthys sp. cellular Scheyer et al., 2014 Chondrostei †Chondrosteiformes †Chondrosteidae †Chondrosteus acipenseroides cellular this study Acipenseriformes Acipenseridae Acipenser baerii cellular Leprévost et al., 2017 Acipenser gueldenstaedtii
    [Show full text]
  • View/Download
    CICHLIFORMES: Cichlidae (part 3) · 1 The ETYFish Project © Christopher Scharpf and Kenneth J. Lazara COMMENTS: v. 6.0 - 30 April 2021 Order CICHLIFORMES (part 3 of 8) Family CICHLIDAE Cichlids (part 3 of 7) Subfamily Pseudocrenilabrinae African Cichlids (Haplochromis through Konia) Haplochromis Hilgendorf 1888 haplo-, simple, proposed as a subgenus of Chromis with unnotched teeth (i.e., flattened and obliquely truncated teeth of H. obliquidens); Chromis, a name dating to Aristotle, possibly derived from chroemo (to neigh), referring to a drum (Sciaenidae) and its ability to make noise, later expanded to embrace cichlids, damselfishes, dottybacks and wrasses (all perch-like fishes once thought to be related), then beginning to be used in the names of African cichlid genera following Chromis (now Oreochromis) mossambicus Peters 1852 Haplochromis acidens Greenwood 1967 acies, sharp edge or point; dens, teeth, referring to its sharp, needle-like teeth Haplochromis adolphifrederici (Boulenger 1914) in honor explorer Adolf Friederich (1873-1969), Duke of Mecklenburg, leader of the Deutsche Zentral-Afrika Expedition (1907-1908), during which type was collected Haplochromis aelocephalus Greenwood 1959 aiolos, shifting, changing, variable; cephalus, head, referring to wide range of variation in head shape Haplochromis aeneocolor Greenwood 1973 aeneus, brazen, referring to “brassy appearance” or coloration of adult males, a possible double entendre (per Erwin Schraml) referring to both “dull bronze” color exhibited by some specimens and to what
    [Show full text]
  • Les Haplochromis Spp. (Teleoster, Cichlidae) Des Zones Rocheuses Du Mwanza Gulf, Lac Victoria, Tanzanie : Structure Des Communautés Et Écomorphologie
    Thèses documen ts microfichés Les Haplochromis spp. (Teleoster, Cichlidae) des zones rocheuses du Mwanza Gulf, lac Victoria, Tanzanie : Structure des communautés et écomorphologie. llllnllllnlniinliiiiniiniiliniiniiniliiiliillilillilFonds Documentaire ORSTOM 010012512 no157 3 microfiches Thèses et documents microfichés Orstom, l’Institut français de recherche scientifique pour le développement en coopération La loi du ler juillet 1992 (code de la propriété intellectuelle, première partie) n’autorisant, aux termes des alinéas 2 et 3 de l’article L. 122-5, d’une part, que les « copies ou reproductions stricte- ment réservées à l’usage du copiste et non destinées à une utilisation collective » et, d’autre part, que les analyses et les courtes citations dans le but d’exemple et d’illustration, « toute représentation ou reproduction intégrale ou partielle faite sans le consentement de l’auteur ou de ses ayants droit ou ayants cause, est illicite » (alinéa ler de l’article L. 122-4). Cette représentation ou reproduction, par quelque procédé que ce soit, constituerait donc une contrefaçon passible des peines prévues au titre III de la loi précitée. 0 ORSTOM éditions 1996, Paris ISSN : 0767-922X ISBN : 2-7099-I 342-9 Les Haplochromis spp. (Teleostei, Cichlidae) des zones rocheuses du Mwanza Gulf, lac Victoria, Tanzanie : structure des communautés et écomorphologie Mots clé Haplochromis, Cichlidae, lac Victoria, Mwanza Gulf, zones rocheuses, structure des communaut&s, ècomorphologie, plasticit6 phbnotypique. spkiation. Résumé L’ichtyofaune du lac Victoria est principalement composee d’especes endemiques de Tel6osteer-u appartenant & la famille des Cichlides. La diversite des formes, Observ&e chez ces poissons, en fait ur des exemples les plus remarquables de radiation adaptative chez les vertebres.
    [Show full text]
  • Evolutionary Morphology of the Extremely Specialized Feeding Apparatus in Seahorses and Pipefishes (Syngnathidae) ( Syngnathidae
    Universiteit Gent Faculteit Wetenschappen Vakgroep Biologie Evolutionaire Morfologie van Vertebraten APPARATUS IN SEAHORSES AND PIPEFISHES THE OF EXTREMELY MORPHOLOGY EVOLUTIONARY SPECIALIZED FEEDING EVOLUTIONARY MORPHOLOGY OF THE EXTREMELY SPECIALIZED FEEDING APPARATUS IN SEAHORSES AND PIPEFISHES (SYNGNATHIDAE) ( SYNGNATHIDAE ) Part 1 - Text Heleen Leysen Thesis submitted to obtain the degree Academiejaar 2010-2011 Heleen Leysen of Doctor in Sciences (Biology) Part Part 1 - Text Proefschrift voorgedragen tot het Rector: Prof. Dr. Paul van Cauwenberge bekomen van de graad van Doctor Decaan: Prof. Dr. Herwig Dejonghe in de Wetenschappen (Biologie) Promotor: Prof. Dr. Dominique Adriaens EVOLUTIONARY MORPHOLOGY OF THE EXTREMELY SPECIALIZED FEEDING APPARATUS IN SEAHORSES AND PIPEFISHES (SYNGNATHIDAE) Part 1 - Text Heleen Leysen Thesis submitted to obtain the degree Academiejaar 2010-2011 of Doctor in Sciences (Biology) Proefschrift voorgedragen tot het Rector: Prof. Dr. Paul van Cauwenberge bekomen van de graad van Doctor Decaan: Prof. Dr. Herwig Dejonghe in de Wetenschappen (Biologie) Promotor: Prof. Dr. Dominique Adriaens READING* AND EXAMINATION COMMITTEE Prof. Dr. Luc Lens, voorzitter (Universiteit Gent, BE) Prof. Dr. Dominique Adriaens, promotor (Universiteit Gent, BE) Prof. Dr. Peter Aerts (Universiteit Antwerpen & Universiteit Gent, BE)* Prof. Dr. Patricia Hernandez (George Washington University, USA)* Dr. Anthony Herrel (Centre National de la Recherche Scientifique, FR)* Dr. Bruno Frédérich (Université de Liège, BE) Dr. Tom Geerinckx (Universiteit Gent, BE) Dankwoord Het schrijven van dit doctoraat was me niet gelukt zonder de hulp, raad en steun van een aantal mensen. Een woord van dank is hier dan ook gepast. Allereerst wil ik Prof. Dr. Dominique Adriaens bedanken voor alles wat hij de afgelopen jaren voor mij heeft gedaan.
    [Show full text]
  • Terrestrial Kbas in the Great Lakes Region (Arranged Alphabetically)
    Appendix 1. Terrestrial KBAs in the Great Lakes Region (arranged alphabetically) Terrestrial KBAs Country Map No.1 Area (ha) Protect AZE3 Pressure Biological Other Action CEPF ion2 Priority4 funding5 Priority6 EAM7 Ajai Wildlife Reserve Uganda 1 15,800 **** medium 4 1 3 Akagera National Park Rwanda 2 100,000 *** medium 3 3 3 Akanyaru wetlands Rwanda 3 30,000 * high 4 0 2 Bandingilo South Sudan 4 1,650,000 **** unknown 4 3 3 Bangweulu swamps (Mweru ) Zambia 5 1,284,000 *** high 4 3 2 Belete-Gera Forest Ethiopia 6 152,109 **** unknown 3 3 3 Y Bonga forest Ethiopia 7 161,423 **** medium 2 3 3 Y Budongo Forest Reserve Uganda 8 79,300 **** medium 2 3 3 Y Bugoma Central Forest Uganda 9 40,100 low 2 3 3 **** Y Reserve Bugungu Wildlife Reserve Uganda 10 47,300 **** medium 4 3 3 Y Bulongwa Forest Reserve Tanzania 11 203 **** unknown 4 0 3 Y Burigi - Biharamulo Game Tanzania 12 350,000 unknown 4 0 3 **** Reserves Bururi Forest Nature Reserve Burundi 13 1,500 **** medium 3 1 3 Y Busia grasslands Kenya 14 250 * very high 4 1 2 Bwindi Impenetrable National Uganda 15 32,700 low 1 3 3 **** Y Park 1 See Basin level maps in Appendix 6. 2 Categorised * <10% protected; ** 10-49% protected; *** 50-90% protected: **** >90% protected. 3 Alliaqnce for Zero Extinction site (Y = yes). See section 2.2.2. 4 See Section 9.2. 5 0 – no funding data; 1 – some funding up to US$50k allocated; 2 – US$50-US$250k; 3 – >US$250k.
    [Show full text]
  • Developmental Finite Element Analysis of Cichlid Pharyngeal Jaws: Quantifying the Generation of a Key Innovation
    RESEARCH ARTICLE Developmental finite element analysis of cichlid pharyngeal jaws: Quantifying the generation of a key innovation Tim Peterson1*, Gerd B. MuÈ ller1,2 1 Department of Theoretical Biology, University of Vienna, Wien, Austria, 2 The KLI Institute, Klosterneuburg, Austria * [email protected] a1111111111 a1111111111 a1111111111 a1111111111 Abstract a1111111111 Advances in imaging and modeling facilitate the calculation of biomechanical forces in bio- logical specimens. These factors play a significant role during ontogenetic development of cichlid pharyngeal jaws, a key innovation responsible for one of the most prolific species diversifications in recent times. MicroCT imaging of radiopaque-stained vertebrate embryos OPEN ACCESS were used to accurately capture the spatial relationships of the pharyngeal jaw apparatus in Citation: Peterson T, MuÈller GB (2018) two cichlid species (Haplochromis elegans and Amatitlania nigrofasciata) for the purpose of Developmental finite element analysis of cichlid pharyngeal jaws: Quantifying the generation of a creating a time series of developmental stages using finite element models, which can be key innovation. PLoS ONE 13(1): e0189985. used to assess the effects of biomechanical forces present in a system at multiple points of https://doi.org/10.1371/journal.pone.0189985 its ontogeny. Changes in muscle vector orientations, bite forces, force on the neurocranium Editor: Paul Eckhard Witten, Universiteit Gent, where cartilage originates, and stress on upper pharyngeal jaws are analyzed in a compara- BELGIUM tive context. In addition, microCT scanning revealed the presence of previously unreported Received: August 12, 2016 cement glands in A. nigrofasciata. The data obtained provide an underrepresented dimen- Accepted: December 6, 2017 sion of information on physical forces present in developmental processes and assist in interpreting the role of developmental dynamics in evolution.
    [Show full text]
  • Downloaded on 23 August 2010
    EVOLUTIONARY MORPHOLOGY OF THE EXTREMELY SPECIALIZED FEEDING APPARATUS IN SEAHORSES AND PIPEFISHES (SYNGNATHIDAE) Part l - Text Thesis submitted to obtain the degree Academiejaar 2010-2011 of Doctor in Sciences (Biology) Proefschrift voorgedragen tot het Rector: Prof. Dr. Paul van Cauwenberge bekomen van de graad van Doctor Decaan: Prof. Dr. Herwig Dejonghe in de Wetenschappen (Biologie) Promotor: Prof. Dr. Dominique Adriaens EVOLUTIONARY MORPHOLOGY OF THE EXTREMELY SPECIALIZED FEEDING APPARATUS IN SEAHORSES AND PIPEFISHES (SYNGNATHIDAE) Part l - Text Heleen Leysen Thesis submitted to obtain the degree Academiejaar 2010-2011 of Doctor in Sciences (Biology) Proefschrift voorgedragen tot het Rector: Prof. Dr. Paul van Cauwenberge bekomen van de graad van Doctor Decaan: Prof. Dr. Herwig Dejonghe in de Wetenschappen (Biologie) Promotor: Prof. Dr. Dominique Adriaens R e a d in g * a n d examination c o m m it t e e Prof. Dr. Luc Lens, voorzitter (Universiteit Gent, BE) Prof. Dr. Dominique Adriaens, promotor (Universiteit Gent, BE) Prof. Dr. Peter Aerts (Universiteit Antwerpen & Universiteit Gent, BE)* Prof. Dr. Patricia Hernandez (George Washington University, USA)* Dr. Anthony Herrei (Centre National de la Recherche Scientifique, FR)* Dr. Bruno Frédérich (Université de Liège, BE) Dr. Tom Geerinckx (Universiteit Gent, BE) Dankwoord Het schrijven van dit doctoraat was me niet gelukt zonder de hulp, raad en steun van een aantal mensen. Een woord van dank is hier dan ook gepast. Allereerst wil ik Prof. Dr. Dominique Adriaens bedanken voor alles wat hij de afgelopen jaren voor mij heeft gedaan. Er zijn veel zaken die het goede verloop van een doctoraat bepalen en de invloed van de promotor is volgens mij een niet te onderschatten factor.
    [Show full text]
  • Bayesian Node Dating Based on Probabilities of Fossil Sampling Supports Trans-Atlantic Dispersal of Cichlid Fishes
    Supporting Information Bayesian Node Dating based on Probabilities of Fossil Sampling Supports Trans-Atlantic Dispersal of Cichlid Fishes Michael Matschiner,1,2y Zuzana Musilov´a,2,3 Julia M. I. Barth,1 Zuzana Starostov´a,3 Walter Salzburger,1,2 Mike Steel,4 and Remco Bouckaert5,6y Addresses: 1Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway 2Zoological Institute, University of Basel, Basel, Switzerland 3Department of Zoology, Faculty of Science, Charles University in Prague, Prague, Czech Republic 4Department of Mathematics and Statistics, University of Canterbury, Christchurch, New Zealand 5Department of Computer Science, University of Auckland, Auckland, New Zealand 6Computational Evolution Group, University of Auckland, Auckland, New Zealand yCorresponding author: E-mail: [email protected], [email protected] 1 Supplementary Text 1 1 Supplementary Text Supplementary Text S1: Sequencing protocols. Mitochondrial genomes of 26 cichlid species were amplified by long-range PCR followed by the 454 pyrosequencing on a GS Roche Junior platform. The primers for long-range PCR were designed specifically in the mitogenomic regions with low interspecific variability. The whole mitogenome of most species was amplified as three fragments using the following primer sets: for the region between position 2 500 bp and 7 300 bp (of mitogenome starting with tRNA-Phe), we used forward primers ZM2500F (5'-ACG ACC TCG ATG TTG GAT CAG GAC ATC C-3'), L2508KAW (Kawaguchi et al. 2001) or S-LA-16SF (Miya & Nishida 2000) and reverse primer ZM7350R (5'-TTA AGG CGT GGT CGT GGA AGT GAA GAA G-3'). The region between 7 300 bp and 12 300 bp was amplified using primers ZM7300F (5'-GCA CAT CCC TCC CAA CTA GGW TTT CAA GAT GC-3') and ZM12300R (5'-TTG CAC CAA GAG TTT TTG GTT CCT AAG ACC-3').
    [Show full text]
  • A Bibliography of the Early Life History of Fishes. Volume 1, List of Titles
    UC San Diego Bibliography Title A Bibliography Of The Early Life History Of Fishes. Volume 1, List Of Titles Permalink https://escholarship.org/uc/item/4p54w451 Author Hoyt, Robert D Publication Date 2002-11-01 eScholarship.org Powered by the California Digital Library University of California A BIBLIOGRAPHY OF THE EARLY LIFE HISTORY OF FISHES. VOLUME 1, LIST OF TITLES Compiled, edited, and published (1988, copyright) by Robert D. Hoyt Department of Biology, Western Kentucky University, Bowling Green, Kentucky 42101 Updated November 2002 by Tom Kennedy Aquatic Biology, University of Alabama, Tuscaloosa, Alabama 35487-0206 and Darrel E. Snyder Larval Fish laboratory, Colorado State University, Fort Collins, Colorado 80523-1474 Dr. Hoyt granted the American Fisheries Society Early Life History Section permission to prepare, update, and distribute his 13,717-record bibliography (comprehensive for literature through 1987, but out-of-print) as a personal computer file or searchable resource on the Internet so long as the file is made available to all interested parties and neither it nor printed versions of it are sold for profit. Because of computer search capabilities, it was deemed unnecessary to provide a computer text version of Dr. Hoyt's subject, scientific name, common name, family name, and location indices (Volume II). As chairman of the Section's bibliography committee, I prepared and partially edited version 1.0 of this file from Dr. Hoyt's original VAX computer tapes and made it available in 1994 for download and use as a searchable resource on the internet. Dr. Julian Humphries (then at Cornell University) and Peter Brueggeman (Scripps Institution of Oceanography Library) prepared and posted the gopher- searchable and web-searchable versions, respectively.
    [Show full text]
  • Musculoskeletal Force Transmission
    407 The Journal of Experimental Biology 216, 407-417 © 2013. Published by The Company of Biologists Ltd doi:10.1242/jeb.074658 RESEARCH ARTICLE Mechanics of snout expansion in suction-feeding seahorses: musculoskeletal force transmission Sam Van Wassenbergh1,*, Heleen Leysen2, Dominique Adriaens2 and Peter Aerts1,3 1Department of Biology, Universiteit Antwerpen, Universiteitsplein 1, B-2610 Antwerp, Belgium, 2Evolutionary Morphology of Vertebrates, Ghent University, K. L. Ledeganckstraat 35, B-9000 Ghent, Belgium and 3Department of Movement and Sports Sciences, Ghent University, Watersportlaan 2, B-9000 Ghent, Belgium *Author for correspondence ([email protected]) SUMMARY Seahorses and other syngnathid fishes rely on a widening of the snout to create the buccal volume increase needed to suck prey into the mouth. This snout widening is caused by abduction of the suspensoria, the long and flat bones outlining the lateral sides of the mouth cavity. However, it remains unknown how seahorses can generate a forceful abduction of the suspensoria. To understand how force is transmitted to the suspensoria via the hyoid and the lower jaw, we performed mathematical simulations with models based on computerized tomography scans of Hippocampus reidi. Our results show that the hinge joint between the left and right hyoid bars, as observed in H. reidi, allows for an efficient force transmission to the suspensorium from a wide range of hyoid angles, including the extremely retracted hyoid orientations observed in vivo for syngnathids. Apart from the hyoid retraction force by the sternohyoideus–hypaxial muscles, force generated in the opposite direction on the hyoid by the mandibulohyoid ligament also has an important contribution to suspensorium abduction torque.
    [Show full text]
  • Taxonomical and Ecological Description of a Species Complex of Zooplanktivorous and Insectivorous Cichlids from Lake Victoria
    Taxonomical and ecological description of a species complex of zooplanktivorous and insectivorous cichlids from Lake Victoria M.J.P. van Oijen & F. Witte Oijen, M.J.P. van & F. Witte. Taxonomical and ecological description of a species complex of zooplanktivorous and insectivorous cichlids from Lake Victoria. Zool. Verh. Leiden 302, 15.ii.1996: 1-56, figs 1-64, tabs 1-15.— ISSN 0024-1652/ISBN 90-73239-44-3. M.J.P. van Oijen, Nationaal Natuurhistorisch Museum, Postbus 9517, 2300 RA Leiden, The Nether- lands. F. Witte, Research group in Ecological Morphology, Van der Klaauw Laboratorium, Rijksuniversiteit Leiden, Postbus 9516, 2300 RA Leiden, The Netherlands. Key words: Cichlidae; Haplochromis; zooplanktivores; insectivores; ecological segregation; intraspeci- fic variation; ontogeny; sexual heterodonty; Nile perch; Lates; predation; habitat shift. The zooplanktivorous Haplochromis tanaos spec. nov., and the morphologically very similar but insecti- vorous Haplochromis thereuterion spec. nov., from Lake Victoria (East Africa) are described and compar- ed to Haplochromis diplotaenia Regan & Trewavas, 1928, a similar species which is known only from the holotype. Intraspecific variation is described for both new species. Ecological data of the new spe- cies are compared to those of known zooplanktivores and insectivores from the Mwanza Gulf area. Both new species disappeared concurrently with the Nile perch (Lates) upsurge early in the 1980's. The recent occurrence of individuals closely resembling the new species, in a different habitat close to the original one, is analysed. Contents Introduction 3 Material and techniques 4 Redescription of Haplochromis diplotaenia Regan & Trewavas, 1928 7 The Haplochromis "double stripe" complex 9 Description of Haplochromis tanaos spec.
    [Show full text]
  • Scienze Della Terra, Della Vita E Dell'ambiente
    Alma Mater Studiorum – Università di Bologna DOTTORATO DI RICERCA IN Scienze della Terra, della Vita e dell’Ambiente Ciclo 29 Settore Concorsuale di afferenza: 05/B1 Zoologia e Antropologia Settore Scientifico disciplinare: BIO/05 Zoologia TITOLO TESI Differential gene expression of dorsal pictorial ornaments and pigmentation in sKates (Rajidae, Chondrichthyes) Presentata da: Alice Ferrari Coordinatore Dottorato Relatore Prof. Barbara Mantovani Prof. Fausto Tinti Co-Relatori Prof. Walter Salzburger Alessia Cariani, PhD Esame finale anno 2017 ABSTRACT Approximately twenty years have passed since the beginning of concentrated investigations on the evolution and ecology of skates. The evidence generated thus far suggested that this monophyletic group have experienced multiple, parallel adaptive radiations at a regional scale, which contributed to the delineation of strong phylogeographical signal since the Cretaceous. This background represented the guiding light of the work described in this thesis, where two main themes were developed. The first one focused on the investigation of Raja miraletus L. species complex through the analysis of genetic variation derived from both mtDNA and nuDNA. The results presented herein assessed the presence of a restricted gene flow and different degree of divergence between the South African and Mediterranean samples, ascribing these patterns to oceanographic discontinuities. Despite the high species diversity characterising the Family, most Rajidae show a stable gross morphology and peculiar dorsal pigmentation patterns, which may have been implicated in cryptic speciation. Nonetheless, the adaptive value and the genetic basis of these traits remain poorly investigated. To fill this gap, this thesis also describes the application of RNA-sequencing technology on recently diverged skate species with sibling and sister phylogenetic relationships.
    [Show full text]