Degradation and Beyond: Control of Androgen Receptor Activity by the Proteasome System
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The Nedd4 Family of E3 Ubiquitin Ligases: Functional Diversity Within a Common Modular Architecture
Oncogene (2004) 23, 1972–1984 & 2004 Nature Publishing Group All rights reserved 0950-9232/04 $25.00 www.nature.com/onc The Nedd4 family of E3 ubiquitin ligases: functional diversity within a common modular architecture Robert J Ingham*,1, Gerald Gish1 and Tony Pawson1,2 1Samuel Lunenfeld Research Institute, Mt. Sinai Hospital, Toronto, Ontario, Canada M5G 1X5; 2Department of Molecular and Medical Genetics, University of Toronto, Toronto, Ontario, Canada M5S 1A8 Neuronal precursor cell-expressed developmentally down- Nedd4 was originally identified in 1992, in a screen for regulated 4 (Nedd4)is the prototypical protein in a family genes developmentally downregulated in the early of E3 ubiquitin ligases that have a common domain embryonic mouse central nervous system (Kumar et al., architecture. They are comprised of a catalytic C-terminal 1992), and resembles other regulatory proteins in HECT domain and N-terminal C2 domain and WW containing multiple, distinct modular domains (Pawson domains responsible for cellular localization and substrate and Nash, 2003). Subsequently, related proteins with recognition. These proteins are found throughout eukar- similar structures have been characterized. All contain a yotes and regulate diverse biological processes through the catalytic HECT domain at the C-terminus, and an N- targeted degradation of proteins that generally have a terminal region involved in substrate recognition, that PPxY motif for WW domain recognition, and are found includes a C2 domain and a series of WW domains. in the nucleus and at the plasma membrane. Whereas the Although the common modular architecture of the yeast Saccharomyces cerevisiae uses a single protein, Nedd4 family might suggest a redundant functional role Rsp5p, to carry out these functions, evolution has provided for these proteins, recent work has begun to define higher eukaryotes with several related Nedd4 proteins that specific cellular activities for individual members, and to appear to have specialized roles. -
View Open Access HPV E6, E6AP and Cervical Cancer Sylvie Beaudenon1 and Jon M Huibregtse*2
BMC Biochemistry BioMed Central Review Open Access HPV E6, E6AP and cervical cancer Sylvie Beaudenon1 and Jon M Huibregtse*2 Address: 1Asuragen, Inc., 2150 Woodward, Austin, TX 78744, USA and 2Molecular Genetics and Microbiology, Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, TX 78712, USA Email: Jon M Huibregtse* - [email protected] * Corresponding author Published: 21 October 2008 <supplement> <title> <p>Ubiquitin-Proteasome System in Disease Part 2</p> </title> <editor>John Mayer and Rob Layfield</editor> <note>Reviews</note> </supplement> BMC Biochemistry 2008, 9(Suppl 1):S4 doi:10.1186/1471-2091-9-S1-S4 This article is available from: http://www.biomedcentral.com/1471-2091/9/S1/S4 © 2008 Beaudenon and Huibregtse; licensee BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Every year, approximately 470,000 new cases of cervical cancer are diagnosed and approximately 230,000 women worldwide die of the disease, with the majority (~80%) of these cases and deaths occurring in developing countries. Human papillomaviruses (HPVs) are the etiological agents in nearly all cases (99.7%) of cervical cancer, and the HPV E6 protein is one of two viral oncoproteins that is expressed in virtually all HPV-positive cancers. E6 hijacks a cellular ubiquitin ligase, E6AP, resulting in the ubiquitylation and degradation of the p53 tumor suppressor, as well as several other cellular proteins. -
Deubiquitinase UCHL1 Maintains Protein Homeostasis Through PSMA7-APEH- Proteasome Axis in High-Grade Serous Ovarian Carcinoma
bioRxiv preprint doi: https://doi.org/10.1101/2020.09.28.316810; this version posted October 9, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Deubiquitinase UCHL1 Maintains Protein Homeostasis through PSMA7-APEH- Proteasome Axis in High-Grade Serous Ovarian Carcinoma Apoorva Tangri1*, Kinzie Lighty1*, Jagadish Loganathan1, Fahmi Mesmar2, Ram Podicheti3, Chi Zhang1, Marcin Iwanicki4, Harikrishna Nakshatri1,5, Sumegha Mitra1,5,# 1 Indiana University School of Medicine, Indianapolis, IN, USA 2 Indiana University, Bloomington, IN, USA 3Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN, USA 4Stevens Institute of Technology, Hoboken, NJ, USA 5Indiana University Melvin & Bren Simon Cancer Center, Indianapolis, USA *Equal contribution # corresponding author; to whom correspondence may be addressed. E-mail: [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.09.28.316810; this version posted October 9, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract High-grade serous ovarian cancer (HGSOC) is characterized by chromosomal instability, DNA damage, oxidative stress, and high metabolic demand, which exacerbate misfolded, unfolded and damaged protein burden resulting in increased proteotoxicity. However, the underlying mechanisms that maintain protein homeostasis to promote HGSOC growth remain poorly understood. In this study, we report that the neuronal deubiquitinating enzyme, ubiquitin carboxyl-terminal hydrolase L1 (UCHL1) is overexpressed in HGSOC and maintains protein homeostasis. UCHL1 expression was markedly increased in HGSOC patient tumors and serous tubal intraepithelial carcinoma (HGSOC precursor lesions). -
Regulation of P53 Localization and Transcription by the HECT Domain E3 Ligase WWP1
Oncogene (2007) 26, 1477–1483 & 2007 Nature Publishing Group All rights reserved 0950-9232/07 $30.00 www.nature.com/onc SHORT COMMUNICATION Regulation of p53 localization and transcription by the HECT domain E3 ligase WWP1 A Laine and Z Ronai Signal Transduction Program, The Burnham Institute for Medical Research, La Jolla, CA, USA As a key cellular regulatory protein p53 is subject to tight 2003; Doran et al., 2004; Shmueli and Oren, 2005; regulation by several E3 ligases. Here, we demonstrate the Harris and Levine, 2005). Common to these ligases is role of HECT domain E3 ligase, WWP1, in regulating p53 their role in limiting p53 stability and activity. In localization and activity. WWP1 associates withp53 and searching for protein ligases with different effects on p53 induces p53 ubiquitylation. Unlike other E3 ligases, activity, we identified the HECT domain E3 ligase WWP1 increases p53 stability; inhibition of WWP1 WWP1, whose interaction with p53 increases its stability expression or expression of a ligase-mutant form results while reducing its transcriptional activity. in decreased p53 expression. WWP1-mediated stabilization WW domain-containing protein 1 (WWP1) was first of p53 is associated withincreased accumulation of p53 in identified as a novelprotein based on its WW modules– cytoplasm witha concomitant decrease in its transcrip- a 35–40 amino-acid (aa) region exhibiting high affinity tional activities. WWP1 effects are independent of Mdm2 towards the PY motif, a proline-rich sequence followed as they are seen in cells lacking Mdm2 expression. by a tyrosine residue (Verdecia et al., 2003). WWP1 Whereas WWP1 limits p53 activity, p53 reduces expres- shares a characteristic domain organization with the E3 sion of WWP1, pointing to a possible feedback loop ligases Nedd4 and Smurfs, which consists of a C2 mechanism. -
Role of Phytochemicals in Colon Cancer Prevention: a Nutrigenomics Approach
Role of phytochemicals in colon cancer prevention: a nutrigenomics approach Marjan J van Erk Promotor: Prof. Dr. P.J. van Bladeren Hoogleraar in de Toxicokinetiek en Biotransformatie Wageningen Universiteit Co-promotoren: Dr. Ir. J.M.M.J.G. Aarts Universitair Docent, Sectie Toxicologie Wageningen Universiteit Dr. Ir. B. van Ommen Senior Research Fellow Nutritional Systems Biology TNO Voeding, Zeist Promotiecommissie: Prof. Dr. P. Dolara University of Florence, Italy Prof. Dr. J.A.M. Leunissen Wageningen Universiteit Prof. Dr. J.C. Mathers University of Newcastle, United Kingdom Prof. Dr. M. Müller Wageningen Universiteit Dit onderzoek is uitgevoerd binnen de onderzoekschool VLAG Role of phytochemicals in colon cancer prevention: a nutrigenomics approach Marjan Jolanda van Erk Proefschrift ter verkrijging van graad van doctor op gezag van de rector magnificus van Wageningen Universiteit, Prof.Dr.Ir. L. Speelman, in het openbaar te verdedigen op vrijdag 1 oktober 2004 des namiddags te vier uur in de Aula Title Role of phytochemicals in colon cancer prevention: a nutrigenomics approach Author Marjan Jolanda van Erk Thesis Wageningen University, Wageningen, the Netherlands (2004) with abstract, with references, with summary in Dutch ISBN 90-8504-085-X ABSTRACT Role of phytochemicals in colon cancer prevention: a nutrigenomics approach Specific food compounds, especially from fruits and vegetables, may protect against development of colon cancer. In this thesis effects and mechanisms of various phytochemicals in relation to colon cancer prevention were studied through application of large-scale gene expression profiling. Expression measurement of thousands of genes can yield a more complete and in-depth insight into the mode of action of the compounds. -
Molecular Basis for Phosphorylation-Dependent, PEST-Mediated Protein Turnover
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Structure 14, 309–319, February 2006 ª2006 Elsevier Ltd All rights reserved DOI 10.1016/j.str.2005.11.012 Molecular Basis for Phosphorylation-Dependent, PEST-Mediated Protein Turnover Maria M. Garcı´a-Alai,1,4 Mariana Gallo,2,4 and threonine (T) and were defined as PEST motifs Marcelo Salame,1 Diana E. Wetzler,1 (Rogers et al., 1986). Since then, different sequences Alison A. McBride,3 Maurizio Paci,2 Daniel O. Cicero,2 that do not contain the PEST motif have also been and Gonzalo de Prat-Gay1,* shown to function as proteolytic signals. These motifs, 1 Instituto Leloir rich in prolines, poly-alanine, poly-glutamic acid, and Patricias Argentinas 435 poly-lysine residues, are required for targeting a vast (1405) Buenos Aires number of proteins for degradation (Reichsteiner and Argentina Rogers, 1996), but less is known about the mechanism 2 University of Rome ‘Tor Vergata’ for protein recognition by the proteolytic machinery. via della Ricerca Scientifica Many PEST-containing proteins are known to be de- 00133, Rome graded by the ubiquitin-26S proteasome (Rechsteiner, Italy 1991), and therefore they must be recognized by the 3 Laboratory of Viral Diseases U2/U3 ligase system to become substrates for proteoly- National Institute of Allergy and Infectious Disease sis. However, although the PEST motif is present all the National Institutes of Health time, the protein is not recognized until it is ‘‘marked’’ for Bethesda, Maryland 20892-0455 degradation. Different molecular mechanisms such as li- gand binding (Shumway et al., 1999), exposure to light, and phosphorylation (Rechsteiner, 1990) have been de- Summary scribed for activating this process. -
Supplementary Materials
Supplementary materials Supplementary Table S1: MGNC compound library Ingredien Molecule Caco- Mol ID MW AlogP OB (%) BBB DL FASA- HL t Name Name 2 shengdi MOL012254 campesterol 400.8 7.63 37.58 1.34 0.98 0.7 0.21 20.2 shengdi MOL000519 coniferin 314.4 3.16 31.11 0.42 -0.2 0.3 0.27 74.6 beta- shengdi MOL000359 414.8 8.08 36.91 1.32 0.99 0.8 0.23 20.2 sitosterol pachymic shengdi MOL000289 528.9 6.54 33.63 0.1 -0.6 0.8 0 9.27 acid Poricoic acid shengdi MOL000291 484.7 5.64 30.52 -0.08 -0.9 0.8 0 8.67 B Chrysanthem shengdi MOL004492 585 8.24 38.72 0.51 -1 0.6 0.3 17.5 axanthin 20- shengdi MOL011455 Hexadecano 418.6 1.91 32.7 -0.24 -0.4 0.7 0.29 104 ylingenol huanglian MOL001454 berberine 336.4 3.45 36.86 1.24 0.57 0.8 0.19 6.57 huanglian MOL013352 Obacunone 454.6 2.68 43.29 0.01 -0.4 0.8 0.31 -13 huanglian MOL002894 berberrubine 322.4 3.2 35.74 1.07 0.17 0.7 0.24 6.46 huanglian MOL002897 epiberberine 336.4 3.45 43.09 1.17 0.4 0.8 0.19 6.1 huanglian MOL002903 (R)-Canadine 339.4 3.4 55.37 1.04 0.57 0.8 0.2 6.41 huanglian MOL002904 Berlambine 351.4 2.49 36.68 0.97 0.17 0.8 0.28 7.33 Corchorosid huanglian MOL002907 404.6 1.34 105 -0.91 -1.3 0.8 0.29 6.68 e A_qt Magnogrand huanglian MOL000622 266.4 1.18 63.71 0.02 -0.2 0.2 0.3 3.17 iolide huanglian MOL000762 Palmidin A 510.5 4.52 35.36 -0.38 -1.5 0.7 0.39 33.2 huanglian MOL000785 palmatine 352.4 3.65 64.6 1.33 0.37 0.7 0.13 2.25 huanglian MOL000098 quercetin 302.3 1.5 46.43 0.05 -0.8 0.3 0.38 14.4 huanglian MOL001458 coptisine 320.3 3.25 30.67 1.21 0.32 0.9 0.26 9.33 huanglian MOL002668 Worenine -
Salivary Biomarkers for Diagnosis of Inflammatory Bowel Diseases
International Journal of Molecular Sciences Review Salivary Biomarkers for Diagnosis of Inflammatory Bowel Diseases: A Systematic Review Kacper Nijakowski * and Anna Surdacka Department of Conservative Dentistry and Endodontics, Poznan University of Medical Sciences, 60-812 Poznan, Poland; [email protected] * Correspondence: [email protected] Received: 24 September 2020; Accepted: 6 October 2020; Published: 10 October 2020 Abstract: Saliva as a biological fluid has a remarkable potential in the non-invasive diagnostics of several systemic disorders. Inflammatory bowel diseases are chronic inflammatory disorders of the gastrointestinal tract. This systematic review was designed to answer the question “Are salivary biomarkers reliable for the diagnosis of inflammatory bowel diseases?”. Following the inclusion and exclusion criteria, eleven studies were included (according to PRISMA statement guidelines). Due to their heterogeneity, the potential salivary markers for IBD were divided into four groups: oxidative status markers, inflammatory cytokines, microRNAs and other biomarkers. Active CD patients manifest decreased activity of antioxidants (e.g., glutathione, catalase) and increased lipid peroxidation. Therefore, malondialdehyde seems to be a good diagnostic marker of CD. Moreover, elevated concentrations of proinflammatory cytokines (such as interleukin 1β, interleukin 6 or tumour necrosis factor α) are associated with the activity of IBD. Additionaly, selected miRNAs are altered in saliva (overexpressed miR-101 in CD; overexpressed miR-21, miR-31, miR-142-3p and underexpressed miR-142-5p in UC). Among other salivary biomarkers, exosomal PSMA7, α-amylase and calprotectin are detected. In conclusion, saliva contains several biomarkers which can be used credibly for the early diagnosis and regular monitoring of IBD. However, further investigations are necessary to validate these findings, as well as to identify new reliable salivary biomarkers. -
Table 1. Swine Proteins Identified As Differentially Expressed at 24Dpi in OURT 88/3 Infected Animals
Table 1. swine proteins identified as differentially expressed at 24dpi in OURT 88/3 infected animals. Gene name Protein ID Protein Name -Log p-value control vs A_24DPI Difference control Vs A_24DPI F8 K7GL28 Coagulation factor VIII 2.123919902 5.42533493 PPBP F1RUL6 C-X-C motif chemokine 3.219079808 4.493174871 SDPR I3LDR9 Caveolae associated protein 2 2.191007299 4.085711161 IGHG L8B0X5 IgG heavy chain 2.084611488 -4.282530149 LOC100517145 F1S3H9 Complement C3 (LOC100517145) 3.885740476 -4.364484406 GOLM1 F1S4I1 Golgi membrane protein 1 1.746130664 -4.767168681 FCN2 I3L5W3 Ficolin-2 2.937884686 -6.029483795 Table 2. swine proteins identified as differentially expressed at 7dpi in Benin ΔMGF infected animals. Gene name Protein ID Protein Name -Log p-value control vs B_7DPI Difference control Vs B_7DPI A0A075B7I5 Ig-like domain-containing protein 1.765578164 -3.480728149 ATP5A1 F1RPS8_PIG ATP synthase subunit alpha 2.270386995 3.270935059 LOC100627396 F1RX35_PIG Fibrinogen C-terminal domain-containing protein 2.211242648 3.967363358 LOC100514666;LOC102158263 F1RX36_PIG Fibrinogen alpha chain 2.337934993 3.758180618 FGB F1RX37_PIG Fibrinogen beta chain 2.411948004 4.03753376 PSMA8 F1SBA5_PIG Proteasome subunit alpha type 1.473601007 -3.815182686 ACAN F1SKR0_PIG Aggrecan core protein 1.974489764 -3.726634026 TFG F1SL01_PIG PB1 domain-containing protein 1.809215274 -3.131304741 LOC100154408 F1SSL6_PIG Proteasome subunit alpha type 1.701949053 -3.944885254 PSMA4 F2Z528_PIG Proteasome subunit alpha type 2.045768185 -4.502977371 PSMA5 F2Z5K2_PIG -
Comparative Transcriptomics Identifies Potential Stemness-Related Markers for Mesenchymal Stromal/Stem Cells
bioRxiv preprint doi: https://doi.org/10.1101/2021.05.25.445659; this version posted May 26, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Comparative Transcriptomics Identifies Potential Stemness-Related Markers for Mesenchymal Stromal/Stem Cells Authors Myret Ghabriel 1, Ahmed El Hosseiny 1, 2, Ahmed Moustafa*1, 2 and Asma Amleh*1, 2 Affiliations 1Biotechnology Program, American University in Cairo, New Cairo 11835, Egypt 2Department of Biology, American University in Cairo, New Cairo 11835, Egypt *Corresponding authors: Ahmed Moustafa [email protected] Asma Amleh [email protected]. Abstract Mesenchymal stromal/stem cells (MSCs) are multipotent cells residing in multiple tissues with the capacity for self-renewal and differentiation into various cell types. These properties make them promising candidates for regenerative therapies. MSC identification is critical in yielding pure populations for successful therapeutic applications; however, the criteria for MSC identification proposed by the International Society for Cellular Therapy (ISCT) is inconsistent across different tissue sources. In this study, we aimed to identify potential markers to be used together with the ISCT’s criteria to provide a more accurate means of MSC identification. Thus, we carried out a comparative analysis of the expression of human and mouse MSCs derived from multiple tissues to identify the common differentially expressed genes. We show that six members of the proteasome degradation system are similarly expressed across MSCs derived from bone marrow, adipose tissue, amnion, and umbilical cord. -
PATZ1 Induces PP4R2 to Form a Negative Feedback Loop on IKK/ NF-Κb Signaling in Lung Cancer
www.impactjournals.com/oncotarget/ Oncotarget, Vol. 7, No. 32 Research Paper PATZ1 induces PP4R2 to form a negative feedback loop on IKK/ NF-κB signaling in lung cancer Ming-Yi Ho1, Chi-Ming Liang1, Shu-Mei Liang1,2 1Genomics Research Center, Academia Sinica, Taipei 11529, Taiwan, ROC 2Agricultural Biotechnology Research Center, Academia Sinica, Taipei 11529, Taiwan, ROC Correspondence to: Chi-Ming Liang, email: [email protected] Shu-Mei Liang, email: [email protected] Keywords: epithelial-mesenchymal transition (EMT), IκB kinase (IKK), migration/invasion/metastasis, PATZ1, protein phosphatase 4 (PP4) Received: February 29, 2016 Accepted: June 17, 2016 Published: July 6, 2016 ABSTRACT Activation of IKK enhances NF-κB signaling to facilitate cancer cell migration, invasion and metastasis. Here, we uncover the existence of a negative feedback loop of IKK. The transcription factor PATZ1 induces protein phosphatase-4 (PP4) regulatory subunit 2 (PP4R2) in an IKK-dependent manner. PP4R2 enhances the binding of PP4 to phosphorylated IKK to inactivate IKK/NF-κB signaling during sustained stimulation by cellular stimuli such as growth factors and inflammatory mediators. Matched pair studies reveal that primary lung cancers express more PATZ1 and PP4R2 than lymph node metastases in patients. Ectopic PATZ1 decreases invasion/colonization of lung cancers and prolongs the survival of xenograft mice. These effects of PATZ1 are reversed by downregulating PP4R2. Our results suggest that PATZ1 and PP4R2 provide negative feedback on IKK/NF-κB signaling to prevent cancer cells from over-stimulation from cellular stimuli; a decline in PATZ1 and PP4R2 is functionally associated with cancer migration/invasion and agents enhancing PATZ1 and PP4R2 are worth exploring to prevent invasion/metastasis of lung cancers. -
How Does SUMO Participate in Spindle Organization?
cells Review How Does SUMO Participate in Spindle Organization? Ariane Abrieu * and Dimitris Liakopoulos * CRBM, CNRS UMR5237, Université de Montpellier, 1919 route de Mende, 34090 Montpellier, France * Correspondence: [email protected] (A.A.); [email protected] (D.L.) Received: 5 July 2019; Accepted: 30 July 2019; Published: 31 July 2019 Abstract: The ubiquitin-like protein SUMO is a regulator involved in most cellular mechanisms. Recent studies have discovered new modes of function for this protein. Of particular interest is the ability of SUMO to organize proteins in larger assemblies, as well as the role of SUMO-dependent ubiquitylation in their disassembly. These mechanisms have been largely described in the context of DNA repair, transcriptional regulation, or signaling, while much less is known on how SUMO facilitates organization of microtubule-dependent processes during mitosis. Remarkably however, SUMO has been known for a long time to modify kinetochore proteins, while more recently, extensive proteomic screens have identified a large number of microtubule- and spindle-associated proteins that are SUMOylated. The aim of this review is to focus on the possible role of SUMOylation in organization of the spindle and kinetochore complexes. We summarize mitotic and microtubule/spindle-associated proteins that have been identified as SUMO conjugates and present examples regarding their regulation by SUMO. Moreover, we discuss the possible contribution of SUMOylation in organization of larger protein assemblies on the spindle, as well as the role of SUMO-targeted ubiquitylation in control of kinetochore assembly and function. Finally, we propose future directions regarding the study of SUMOylation in regulation of spindle organization and examine the potential of SUMO and SUMO-mediated degradation as target for antimitotic-based therapies.