Integrated Service and Desktop Grids for Scientific Computing
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Tesi Di Laurea La Solidarietà Digitale
Tesi di Laurea La Solidarietà Digitale Da Seti@home a Boinc. Ipotesi di una società dell’elaborazione. di Francesco Morello 1 INDICE Introduzione............................................................... 4 Capitolo I Calcolo Vontario....................................... 5 1.1 Dai media di massa al calcolo distribuito......... 5 1.2 Calcolo Distribuito............................................... 6 1.3 Calcolo Volontario............................................... 8 1.3.1 Come funziona il calcolo volontario ?.......... 10 1.3.2 Applicazioni del Calcolo Volontario.............. 11 Capitolo II Analisi di BOINC.................................... 23 2.1 Piattaforma per il calcolo volontario............... 23 2.2 Architettura di BOINC........................................ 25 2.2.1 L'interfaccia di BOINC.................................... 25 2.2.2 Progetti e Volontari......................................... 31 2.2.3 Checkpointing e Work unit............................ 32 2.2.4 Crediti e ridondanza....................................... 32 2.2.5 Gli scopi di BOINC.......................................... 33 Capitolo III Aspetti tecnici del calcolo distribuito 36 3.1 Grid Computing vs Volunteer Computing....... 36 3.2 Hardware e Software per il Distributed Computing38 3.2.1 La Playstation 3 per raggiungere il Petaflop.41 Capitolo IV Aspetti sociali del calcolo volontario 45 4.1 Riavvicinarci alla scienza.................................. 45 2 4.2 Volontari oltre la CPU........................................ 47 4.2.1 Forum, Blog -
BRINGING RESEARCH INTO the CLASSROOM T H E C I T I Z E N S C I E N C E a P P R O a C H I N S C H O O L S a SCIENTIX OBSERVATORY REPORT - APRIL 2019
BRINGING RESEARCH INTO THE CLASSROOM THE CITIZEN SCIENCE APPROACH IN SCHOOLS A SCIENTIX OBSERVATORY REPORT - APRIL 2019 B R T E C Scientix, the community for science education in Europe, facilitates regular dissemination and sharing of know-how and best practices in science education across the European Union (http://scientix.eu). In order to help the development and dissemination of different science education projects Scientix has set up the Scientix observatory which provides overviews on the state of play of different topics related to science education (http://www.scientix.eu/observatory). Publisher: European Schoolnet Please cite this publication as: Nistor, A. et al. (2019). Bringing Research into the Classroom – The Citizen Science approach in schools. Scientix Observatory report. April 2019, European Schoolnet, Brussels Keywords: Science, Technology, Engineering and Mathematics (STEM); Citizen Science; Participatory Science; School Education Authors: Nistor, A., Clemente-Gallardo, J., Angelopoulos, T., Chodzinska, K., Clemente-Gallardo, M., Gozdzik, A. , Gras-Velazquez, A., Grizelj, A., Kolenberg, K., Mitropoulou, D., Micallef Gatt, A. D., Tasiopoulou, E., Brunello, A., Echard, P., Arvaniti, V., Carroll, S., Cindea, N., Diamantopoulos, N., Duquenne, N. , Edrisy, S., Ferguson, E., Galani, L., Glezou, K., Kameas, A., Kirmaci, H., Koliakou, I., Konomi, E., Kontopidi, E., Kulic, S., Lefkos, I., Nikoletakis, G., Siotou, E., Šimac, A., Sormani, F., Tramonti, M., Tsapara, M., Tsourlidaki, E., Vojinovic, M. Design/DTP: Vanessa James Picture credit: Shutterstock, Pixabay Print run: 500 ISBN: 9789492913852 Published in April 2019. The views expressed in this publication are those of the authors and not necessarily those of EUN Partnership AISBL or the European Commission. The work presented in this document is supported by the European Commission’s Erasmus+ programme – project BRITEC, coordinated by the Institute of Geophysics, PAS and by the European Union’s H2020 research and innovation programme – project Scientix 3 (Grant agreement N. -
Volunteer Computing Different Grids for Different Needs
From the Web to the Grid How did the Grid start? • Name “Grid” chosen by analogy with electric power grid (Foster and Kesselman 1997) • Vision: plug-in computer for processing power just like plugging in toaster for electricity. • Concept has been around for decades (distributed computing, metacomputing) • Key difference with the Grid is to realise the vision on a global scale. From the Web to the Grid – 2007 HST 2011: Grids and Volunteer Computing Different Grids for different needs There is as yet no unified Grid, like there is a single web. Rather there are many Grids for many applications: • Enterprise Grids link together PCs within one company. • Volunteer computing links together public computers. • Scientific Grids link together major computing centres. • Latest trend federates national Grids into global Grid infrastructure. • High Energy Physics is a driving force for this. HST 2011: Grids and Volunteer Computing The LHC data challenge 1 Megabyte (1MB) • 40 million bunch collisions per second A digital photo 1 Gigabyte (1GB) = 1000MB • After filtering, ~100 collisions of 5GB = A DVD movie interest per second per detector 1 Terabyte (1TB) = 1000GB World annual book production • > 1 Megabyte of data per collision 1 Petabyte (1PB) recording rate > 1 Gigabyte/sec = 1000TB Annual production of one LHC experiment 10 • 10 collisions recorded each year 1 Exabyte (1EB) stored data ~15 Petabytes/year = 1000 PB 3EB = World annual information production …for more than 10 years HST 2011: Grids and Volunteer Computing Data Storage for the LHC Balloon (30 Km) • LHC data correspond to about 20 million CDs each year! CD stack with 1 year LHC data! (~ 20 Km) Concorde Where will the (15 Km) experiments store all of these data? Mt. -
Analysis and Predictions of DNA Sequence Transformations on Grids
Analysis and Predictions of DNA Sequence Transformations on Grids A Thesis Submitted for the Degree of Master of Science (Engineering) in the Faculty of Engineering By Yadnyesh R. Joshi Supercomputer Education and Research Centre INDIAN INSTITUTE OF SCIENCE BANGALORE – 560 012, INDIA August 2007 Acknowledgments First of all I would like to extend my sincere thanks to my research supervisor Dr. Sathish Vadhiyar for his constant guidance and support during the entire period of my post-graduation at IISc. He was always approachable, supportive and ready to help in any sort of problem. I am very thankful to him for being extremely patient and understanding about the silly mistakes that I had made. Under his guidance I learned to approach problems in an organized manner and set realistic goals for my research. I thank him for his extreme patience and excellent technical guidance in writing and presenting research. Finally, he was and continues to be my role model for his hard work and passion for research. I am also thankful to Dr. Nagasuma Chandra, Dr. Debnath Pal from S.E.R.C. and Dr. Narendra Dixit from Chemical Engineering department for their very useful and interesting insights into the biological domain of our research. I am also thankful to all the faculty of S.E.R.C. for always inspiring us with their motivational talks. I would like to mention the names of my colleagues Sandip, Sanjay, Rakhi, Sundari, Antoine and Roshan for making their technical and emotional support. Special thanks to vatyaa kya group members for the adventures and the routines inside and outside the institute. -
"Challenges and Formal Aspects of Volunteer Computing"
BUDAPEST UNIVERSITY OF TECHNOLOGY AND ECONOMICS FACULTY OF ELECTRICAL ENGINEERING AND INFORMATICS DEPARTMENT OF AUTOMATION AND APPLIED INFORMATICS Attila Csaba Marosi Önkéntes Számítási Rendszerek Kihívásai és Formális Aspektusai Challenges and Formal Aspects of Volunteer Computing Ph.D. Thesis Thesis Advisors: Péter Kacsuk MTA SZTAKI, LPDS Sándor Juhász BME, AUT Budapest, 2016. ‘‘The important thing is not to stop questioning. Curiosity has its own reason for existing. One cannot help but be in awe when he contemplates the mysteries of eternity, of life, of the marvelous structure of reality. It is enough if one tries merely to comprehend a little of this mystery every day. Never lose a holy curiosity.’’ -- Albert Einstein Abstract Volunteer Computing (VC) and Desktop Grid (DG) systems collect and make available the donated the resources from non-dedicated computers like office and home desktops. VC systems are usually deployed to solve a grand compute intensive problem by researchers who either don’t have access to or don’t have the resources to buy a dedicated infrastruc- ture; or simply don’t want to maintain such an infrastructure. VC and DG paradigms seem similar, however they target different use cases and environments: DG systems operate within the boundaries of institutes, while VC systems collect resources from the publicly accessible internet. Evidently VC resembles DGs whereas DGs are not fully equivalent to VC. Contrary to “traditional grids” [1,2] there is no formal definition for the relationship of DG and VC that could be used to categorize existing systems. There are informal at- tempts to categorize them and compare with grid systems [3,4,5]. -
Analyzing Daily Computing Runtimes on the World Community Grid
https://doi.org/10.48009/3_iis_2020_289-297 Issues in Information Systems Volume 21, Issue 3, pp. 289-297, 2020 EXPLORING GRID COMPUTING & VOLUNTEER COMPUTING: ANALYZING DAILY COMPUTING RUNTIMES ON THE WORLD COMMUNITY GRID Kieran Raabe, Bloomsburg University of Pennsylvania, [email protected] Loreen M. Powell, Bloomsburg University of Pennsylvania, [email protected] ABSTRACT In the early 1990s, the concept of grid computing was little more than a simple comparison which stated that making computing power as accessible as electricity from a power grid. Today, grid computing is far more complex. Grid computing involves utilizing unused computing power from devices across the globe to run calculations and simulations and submit the results to move a project closer to its goal. Some projects, such as World Community Grid, work to achieve numerous goals, herein referred to as subprojects. The goal of this research is to explore grid computing and volunteer computing. Specifically, this research involved a daily collection of statistics on daily results returned to World Community Grid and daily computing runtimes for three subprojects named Africa Rainfall Project, Microbiome Immunity Project, and Help Stop TB. The data collection lasted four weeks and resulted in five graphs for each subproject being created with the collected data. Results revealed a correlation between daily results returned and daily runtimes, with each data point for results returned being slightly lower than the runtime data point from the same day. Keywords: Grid Computing, Volunteer Computing, BOINC, World Community Grid INTRODUCTION The concept of grid computing has existed since the early 1990s. Originally “a metaphor for making computer power as easy to access by the user as electricity from a power grid” (Dutton & Jeffreys, 2010). -
An Investigation Into Citizen Cyberscience
When Scientists Meet the Public: An Investigation into Citizen Cyberscience Peter Darch Corpus Christi College University of Oxford A dissertation submitted in partial fulfilment of the requirements for the degree of Doctor of Philosophy Michaelmas Term 2011 Peter Darch Corpus Christi College When Scientists Meet the Public: An Investigation into Citizen Cyberscience Abstract Citizen Cyberscience Projects (CCPs) are projects mediated through the Internet, in which teams of scientists recruit members of the public (volunteers) to assist in scientific research, typically through the processing of large quantities of data. This thesis presents qualitative ethnographic case studies of the communities that have formed around two such projects, climateprediction.net and Galaxy Zoo. By considering these social actors in the broader contexts in which they are situated (historical, institutional, social, scientific), I discuss the co-shaping of the interests of these actors, the nature of the relationships amongst these actors, and the infrastructure of the projects and the purposes and nature of the scientific work performed. The thesis focusses on two relationships in particular. The first is that between scientists and volunteers, finding that, although scientists in both projects are concerned with treating volunteers with respect, there are nevertheless considerable differences between the projects. These are related to a number of interconnecting factors, including the particular contexts in which each project is embedded, the nature of the scientific work that volunteers are asked to undertake, the possibilities and challenges for the future development of the projects as perceived by the scientists, and the tools at the disposal of the respective teams of scientists for mediating relationships with volunteers. -
EDGES Project Meeting
International Desktop Grid Federation - Support Project Contract number: FP7-312297 Desktop Grids for e-Science Road Map Project deliverable: D5.5.1 Due date of deliverable: 2013-10-31 Actual submission date: 2013-12-27 Lead beneficiary: AlmereGrid Workpackage: WP5 Dissemination Level: PU Version: 1.2 (Final) IDGF-SP is supported by the FP7 Capacities Programme under contract nr FP7-312297. D5.5.1 – Desktop Grids for e-Science Road Map CopyriGht (c) 2013. MemBers of IDGF-SP consortium, see http://IDGF-SP.eu for details on the copyriGht holders. You are permitted to copy and distriBute verBatim copies of this document containinG this copyriGht notice But modifyinG this document is not allowed. You are permitted to copy this document in whole or in part into other documents if you attach the followinG reference to the copied elements: ‘Copyright (c) 2013. Members of IDGF-SP consortium - http://IDGF-SP.eu’. The commercial use of any information contained in this document may require a license from the proprietor of that information. The IDGF-SP consortium memBers do not warrant that the information contained in the deliveraBle is capaBle of use, or that use of the information is free from risk, and accept no liaBility for loss or damaGe suffered By any person and orGanisation usinG this information. WP3 © 2013. Members of IDGF-SP consortium - http://IDGF-SP.eu 2/8 D5.5.1 – Desktop Grids for e-Science Road Map Table of Contents 1 Status and ChanGe History ................................................................................................. -
Citizen Science for Environmental Policy: Development of an EU-Wide Inventory and Analysis of Selected Practices
Citizen science for environmental policy: Development of an EU-wide inventory and analysis of selected practices Bio Innovation Service, in collaboration with Fundación Ibercivis and The Natural History Museum Citizen science for environmental policy Disclaimer The information and views set out in this report are those of the authors and do not necessarily reflect the official opinion of the Commission. The Commission does not guarantee the accuracy of the data included in this study. Neither the Commission nor any person acting on the Commission’s behalf may be held responsible for the use which may be made of the information contained therein. Project team Shailendra Mugdal (BIO Innovation Service) Anne Turbe (BIO Innovation Service) Francisco Sanz (Ibercivis) Jorge Barba (Ibercivis) Maite Pelacho (Ibercivis) Fermin Serrano-Sanz (Ibercivis) Lucy Robinson (Natural History Museum) Margaret Gold (Natural History Museum) Acknowledgments We would like to express our sincere thanks to all citizen science projects that invested their precious time in answering our questions, this study would not have been possible without their support. We also thank the colleagues at the European Commission: Sven Schade and Chrysi Tsinarki (JRC), José Miguel Rubio Iglesias (EEA); Marjan Van Merloo (DG RTD); Izabela Freytag (EASME); Liam Cashman (DG ENV); for their support and comments and Elena Montani (DG ENV) for overall guidance. Citation Bio Innovation Service (2018) Citizen science for environmental policy: development of an EU-wide inventory and analysis of selected practices. Final report for the European Commission, DG Environment under the contract 070203/2017/768879/ETU/ENV.A.3, in collaboration with Fundacion Ibercivis and The Natural History Museum, November 2018. -
Cell Spotting – Let’S Fight Cancer Together!
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Repositorio Universidad de Zaragoza Image courtesy of the National Institutes Health (NIH) Scanning electron micrograph of an apoptotic HeLa cell Cell spotting – let’s fight cancer together! “Tell me and I forget, teach me and I HeLa cells may remember, involve me and I learn,” HeLa cells are a special hu- Benjamin Franklin once said. Make that man cell line. They originate from a woman called Hen- quote yours and involve your students in a rietta Lacks, who died from cervical cancer in 1951. Her real cancer-research project that will teach doctor took some cells from them more than just genetics and cell death. her tumour and managed to grow them in a culture me- dium, developing the first human cell line. HeLa cells By António J Monteiro, Cândida cells without harming healthy cells. are the most widely used G Silva and José C Villar Existing chemotherapy treatments human cells in biology labs have failed to reach that ideal level of BACKGROUND across the world. fficient cancer drugs need to selectivity, but many research teams E selectively destroy tumour continue to look for compounds that 46 I Science in School I Issue 31 : Spring 2015 www.scienceinschool.org Teach could become the effective and side- the response of HeLa cells to different Biology effect-free drugs of tomorrow. chemical compounds. Biology The search for suitable compounds The Cell Spotting project Technology is performed primarily by robotic Ages 14–18 The Cell Spotting team is testing systems that quickly test and identify This article describes a stu- more than 14 000 chemical com- millions of candidate chemical com- dent-centred activity that pounds in HeLa cells and observing pounds: they put cancer cells together introduces the concept of their reaction using advanced optical with potential drugs and observe efficient cancer drugs and microscopy techniques. -
Toward Crowdsourced Drug Discovery: Start-Up of the Volunteer Computing Project Sidock@Home
Toward crowdsourced drug discovery: start-up of the volunteer computing project SiDock@home Natalia Nikitina1[0000-0002-0538-2939] , Maxim Manzyuk2[000-0002-6628-0119], Marko Juki´c3;4[0000-0001-6083-5024], Crtomirˇ Podlipnik5[0000-0002-8429-0273], Ilya Kurochkin6[0000-0002-0399-6208], and Alexander Albertian6[0000-0002-6586-8930] 1 Institute of Applied Mathematical Research, Karelian Research Center of the Russian Academy of Sciences, Petrozavodsk, Russia, [email protected] 2 Internet portal BOINC.ru, Moscow, Russia, [email protected] 3 Chemistry and Chemical Engineering, University of Maribor, Maribor, Slovenia 4 Faculty of Mathematics, Natural Sciences and Information Technologies, University of Primorska, Koper, Slovenia [email protected] 5 Faculty of Chemistry and Chemical Technology, University of Ljubljana, Ljubljana, Slovenia, [email protected] 6 Federal Research Center \Computer Science and Control" of the Russian Academy of Sciences, Moscow, Russia, [email protected], [email protected], [email protected] Abstract. In this paper, we describe the experience of setting up a computational infrastructure based on BOINC middleware and running a volunteer computing project on its basis. We characterize the first series of computational experiments and review the project's development in its first six months. The gathered experience shows that BOINC-based Desktop Grids allow to to efficiently aid drug discovery at its early stages. Keywords: Desktop Grid · Distributed computing · Volunteer comput- ing · BOINC · Virtual drug screening · Molecular docking · SARS-CoV-2 1 Introduction Among the variety of high-performance computing (HPC) systems, Desktop Grids hold a special place due to their enormous potential and, at the same time, high availability. -
Deploying and Maintaining a Campus Grid at Clemson University Dru Sepulveda Clemson University, [email protected]
Clemson University TigerPrints All Theses Theses 8-2009 Deploying and Maintaining a Campus Grid at Clemson University Dru Sepulveda Clemson University, [email protected] Follow this and additional works at: https://tigerprints.clemson.edu/all_theses Part of the Computer Sciences Commons Recommended Citation Sepulveda, Dru, "Deploying and Maintaining a Campus Grid at Clemson University" (2009). All Theses. 662. https://tigerprints.clemson.edu/all_theses/662 This Thesis is brought to you for free and open access by the Theses at TigerPrints. It has been accepted for inclusion in All Theses by an authorized administrator of TigerPrints. For more information, please contact [email protected]. Deploying and Maintaining a Campus Grid at Clemson University A Thesis Presented to the Graduate School of Clemson University In Partial Fulfillment of the Requirements for the Degree Masters Computer Science by Dru Sepulveda May 2009 Accepted by: Sebastien Goasguen, Committee Chair Mark Smotherman Steven Stevenson Abstract Many institutions have all the tools needed to create a local grid that aggregates commodity compute resources into an accessible grid service, while simultaneously maintaining user satisfaction and system security. In this thesis, the author presents a three-tiered strategy used at Clemson University to deploy and maintain a grid infrastructure by making resources available to both local and federated remote users for scientific research. Using this approach virtually no compute cycles are wasted. Usage trends and power consumption statistics collected from the Clemson campus grid are used as a reference for best-practices. The loosely-coupled components that comprise the campus grid work together to form a highly cohesive infrastructure that not only meets the computing needs of local users, but also helps to fill the needs of the scientific community at large.