(Brassicaceae), a New Species from Chola Shan, Southwest China
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Taxa Named in Honor of Ihsan A. Al-Shehbaz
TAXA NAMED IN HONOR OF IHSAN A. AL-SHEHBAZ 1. Tribe Shehbazieae D. A. German, Turczaninowia 17(4): 22. 2014. 2. Shehbazia D. A. German, Turczaninowia 17(4): 20. 2014. 3. Shehbazia tibetica (Maxim.) D. A. German, Turczaninowia 17(4): 20. 2014. 4. Astragalus shehbazii Zarre & Podlech, Feddes Repert. 116: 70. 2005. 5. Bornmuellerantha alshehbaziana Dönmez & Mutlu, Novon 20: 265. 2010. 6. Centaurea shahbazii Ranjbar & Negaresh, Edinb. J. Bot. 71: 1. 2014. 7. Draba alshehbazii Klimeš & D. A. German, Bot. J. Linn. Soc. 158: 750. 2008. 8. Ferula shehbaziana S. A. Ahmad, Harvard Pap. Bot. 18: 99. 2013. 9. Matthiola shehbazii Ranjbar & Karami, Nordic J. Bot. doi: 10.1111/j.1756-1051.2013.00326.x, 10. Plocama alshehbazii F. O. Khass., D. Khamr., U. Khuzh. & Achilova, Stapfia 101: 25. 2014. 11. Alshehbazia Salariato & Zuloaga, Kew Bulletin …….. 2015 12. Alshehbzia hauthalii (Gilg & Muschl.) Salariato & Zuloaga 13. Ihsanalshehbazia Tahir Ali & Thines, Taxon 65: 93. 2016. 14. Ihsanalshehbazia granatensis (Boiss. & Reuter) Tahir Ali & Thines, Taxon 65. 93. 2016. 15. Aubrieta alshehbazii Dönmez, Uǧurlu & M.A.Koch, Phytotaxa 299. 104. 2017. 16. Silene shehbazii S.A.Ahmad, Novon 25: 131. 2017. PUBLICATIONS OF IHSAN A. AL-SHEHBAZ 1973 1. Al-Shehbaz, I. A. 1973. The biosystematics of the genus Thelypodium (Cruciferae). Contrib. Gray Herb. 204: 3-148. 1977 2. Al-Shehbaz, I. A. 1977. Protogyny, Cruciferae. Syst. Bot. 2: 327-333. 3. A. R. Al-Mayah & I. A. Al-Shehbaz. 1977. Chromosome numbers for some Leguminosae from Iraq. Bot. Notiser 130: 437-440. 1978 4. Al-Shehbaz, I. A. 1978. Chromosome number reports, certain Cruciferae from Iraq. -
Evolution and Diversification of the Plant Gibberellin Receptor GID1
Evolution and diversification of the plant gibberellin receptor GID1 Hideki Yoshidaa,b, Eiichi Tanimotoc, Takaaki Hiraia, Yohei Miyanoirid,e, Rie Mitania, Mayuko Kawamuraa, Mitsuhiro Takedad,f, Sayaka Takeharaa, Ko Hiranoa, Masatsune Kainoshod,g, Takashi Akagih, Makoto Matsuokaa,1, and Miyako Ueguchi-Tanakaa,1 aBioscience and Biotechnology Center, Nagoya University, Nagoya, 464-8601 Aichi, Japan; bKihara Institute for Biological Research, Yokohama City University, Yokohama, 244-0813 Kanagawa, Japan; cGraduate School of Natural Sciences, Nagoya City University, Nagoya, 467-8501 Aichi, Japan; dStructural Biology Research Center, Graduate School of Science, Nagoya University, Nagoya, 464-8601 Aichi, Japan; eResearch Center for State-of-the-Art Functional Protein Analysis, Institute for Protein Research, Osaka University, Suita, 565-0871 Osaka, Japan; fDepartment of Structural BioImaging, Faculty of Life Sciences, Kumamoto University, 862-0973 Kumamoto, Japan; gGraduate School of Science and Engineering, Tokyo Metropolitan University, Hachioji, 192-0397 Tokyo, Japan; and hGraduate School of Agriculture, Kyoto University, 606-8502 Kyoto, Japan Edited by Mark Estelle, University of California, San Diego, La Jolla, CA, and approved July 10, 2018 (received for review April 9, 2018) The plant gibberellin (GA) receptor GID1 shows sequence similarity erwort Marchantia polymorpha (5–7). Furthermore, Hirano et al. to carboxylesterase (CXE). Here, we report the molecular evolution (5) reported that GID1s in the lycophyte Selaginella moellen- of GID1 from establishment to functionally diverse forms in dorffii (SmGID1s) have unique properties in comparison with eudicots. By introducing 18 mutagenized rice GID1s into a rice angiosperm GID1s: namely, lower affinity to bioactive GAs and gid1 null mutant, we identified the amino acids crucial for higher affinity to inactive GAs (lower specificity). -
Eutrema Salsugineum (Cruciferae) New to Mexico: a Surprising Generic
A peer-reviewed open-access journal PhytoKeys 76:Eutrema 13–21 (2017) salsugineum (Cruciferae) new to Mexico: a surprising generic record... 13 doi: 10.3897/phytokeys.76.9731 SHORT COMMUNICATION http://phytokeys.pensoft.net Launched to accelerate biodiversity research Eutrema salsugineum (Cruciferae) new to Mexico: a surprising generic record for the flora of Middle America Dmitry A. German1,2, Marcus A. Koch1 1 Department of Biodiversity and Plant Systematics, Centre for Organismal Studies (COS) Heidelberg, Hei- delberg University, Im Neuenheimer Feld 345, D-69120 Heidelberg, Germany 2 South-Siberian Botanical Garden, Altai State University, Lenin Str. 61, 656049 Barnaul, Russia Corresponding author: Dmitry A. German ([email protected]) Academic editor: P. de Lange | Received 9 November 2016 | Accepted 12 December 2016 | Published 5 January 2017 Citation: German DA, Koch MA (2017) Eutrema salsugineum (Cruciferae) new to Mexico: a surprising generic record for the flora of Middle America. PhytoKeys 76: 13–21. https://doi.org/10.3897/phytokeys.76.9731 Abstract The paper reports Eutrema salsugineum as a novelty to the flora of Mexico and Middle America in general. The finding stands ca. 1600 km apart from the closest known locality in the Rocky Mountains of Colora- do, USA. The species is considered native to NW Mexico and its late discovery in the region is presumably explained by its tiny habit, early flowering time, and subephemeral life cycle. The phylogenetic position of this Mexican population in a haplotype network based on the chloroplast DNA fragment psbA-trnH confirms this hypothesis and also suggests, in contrast to the previously held viewpoint, multiple coloniza- tions of North American continent from Asia. -
Is the Endangered Species Act in Danger?
Aqui egza• Newsletter of the Colorado Native Plant Society " ... dedicated to the appreciation and conservation of the Colorado native flora" ......... ..... .. ~ ........... ," .. ,' .... ", ., ..... ', .. " .. -.". ","' ....... " ... _, qtl.ty> •• t.h.·rQI.J.g.h •• ·} ••• [).~.C~nlt>e," 1.·9.93··· Is The Endangered Species Act In Danger? Nina Williams under the Act are those fortunate enough to Furthermore, unlike wildlife and fish, only Legislative Affairs Committee reside on federal land, those endangered by plant species or sub-species, not populations, a project receiving federal funds, or those are eligible for protection under the Act. The battle over our nation's strongest plant species afforded protection by state This means that unless a plant is imperiled environmental law , the Endangered Species law. This last provision offers no help in throughout its entire range, it can not be Act of 1973 (ESA, the Act), is heating up in Colorado where the only plant protected by protected under the Act. In contrast, a Congress. The ESA is now 20 years old and state law is the ubiquitous state flower, the threatened or endangered population of ~ up for re-authorization in the next session of Colorado columbine (Aqui/egia caerulea). animals can be protected under the Act even the United States Congress. It is no surprise Colorado state law provides absolutely NO if viable populations of the same species that the Act is facing strong opposition from protection for any other plant species on exist elsewhere. conservative private property rights private land, including the 88 species advocates such as the Wise Use Movement. identified by the Colorado Natural Heritage Inequitable treatment ofplants has been the High profile struggles such as old growth Program as rare. -
Wasabi – Eutrema Japonicum
Did You Know? Wasabi – Eutrema japonicum • Is in the Brassicaceae family, the same family as horseradish, mustard, cabbage and kale • Japanese horseradish is a common name (although it is not in the same genus as horseradish) • Prepared wasabi comes from grating the rhizome of the Eutrema japonicum plant • Most commonly sold as a dried powder or as a paste in a tube • Originated in Japan, and can be traced back to 794 CE • The condiment sold as wasabi often contains no wasabi at all, but is rather a mixture of horseradish, mustard and food coloring • Leaves, rhizomes, stems (petioles) and flowers of the wasabi plant are edible • Grate the wasabi rhizome just before serving as it loses flavor 10- 15 minutes after it has been prepared • Traditionally, the grater used to prepare wasabi was made from a piece of dry sharkskin stapled to a wooden paddle. Grating was done by pressing the rhizome onto the paddle and moved in a circular motion until a paste formed. • Studied for medicinal uses, including as an anti-inflammatory, anti-bacterial and to reduce risk of osteoporosis, heart disease, and cancer • Is high in antioxidants, vitamin C and contains some vitamin A and iron • Wasabi grows in cool, shady conditions in temperate regions (45-70˚F), preferring high humidity during the summer months and ample water. • Wasabi requires 18 months and up to three years of growth to reach maturity • Commercially, wasabi is grown in northern Japan, parts of China, Taiwan, Korea and New Zealand. The right climate balance for successful wasabi growth can be found in North America in the rain forests on the Oregon Coast and parts of the Blue Ridge Mountains in North Carolina and Tennessee. -
Genome 2Fractional WGD 2412.6 Γ 1595.2 ): 0.17 0.51 Ε ): 0.64 • 233.6 136.8 0.02
Where does biological order come from? Gavin Conant Bioinformatics Research Center Biological Sciences Program in Genetics [email protected] conantlab.org Tracking flipprob.:0.0081 Fixation rate( preservationrate( Genome 2fractional WGD 2412.6 γ 1595.2 ): 0.17 0.51 ε ): 0.64 • 233.6 136.8 0.02 0.09 133.0 84.8 0.08 105.7 0.06 31.2 187.4 35.0 Metagenomics 312.3 281.2 188.7 298.0 410.1 192.6 0.16 195.8 0.17 997.0 282.0 0.17 388.0 608.2 0.54 0.24 258.8 0.23 Thellungiella halophila Thellungiella halophila Arabidopsis thaliana Arabidopsis thaliana Aethionema arabicum Eutrema parvulum Eutrema parvulum Aethionema arabicum Arabidopsis lyrata Arabidopsis lyrata Capsella rubella Capsella rubella 3189.3 3095.4 3126.4 2203.4 2033.5 2096.5 2098.7 2036.6 2040.6 3409.6 3131.5 3221.5 AA32G00445 Tp4g15760 20180168 10023932 AT2G33430 DAL 0.999 Tp1g03280 20187201 10012323 AT1G04450 AA32G00441 Tp4g15800 20179724 10025564 4001438 RIC1 0.998 AA19G00112 Tp1g03240 20188475 10009108 100399 AT1G04420 0.999 from PG#1 All singlecopy AA19G00113 Tp1g03230 20188581 AT1G04410 C-NAD-MDH1, AA32G00436 Tp2g08140 20208201 10026756 AT5G43330 C-NAD-MDH2 0.997 Tp1g03220 20187279 10008610 AT1G04400 AT-PHH1 AA32G00435 Tp2g08150 20208192 0.997 Tp1g03180 20187678 10011057 100393 ERF14 AA32G00429 Tp2g08290 20207965 10028227 800707 ERF96 0.995 AA19G00116 Tp1g03170 20188613 10012007 100392 AA32G00428 Tp2g08300 20207948 10028453 AT5G43420 AT5G43420 0.994 from PG#2 All singlecopy AA19G00118 Tp1g03150 20188264 10010342 100390 AT1G04340 AA32G00426 Tp2g08340 20208037 10027196 AT5G43460 0.994 -
Nomenclatural Adjustments in Eutrema, Ceratocnemum, Rhamphospermum, and Sinapis (Brassicaceae, Cruciferae)
NOMENclaturAL AdjuSTMENTS IN EUTREMA, CERATOCNEMUM, RHAMPHOSPERMUM, AND SINAPIS (BrASSIcAcEAE, crucIFErAE) IHSAN A. AL-SHEHBAZ1 Abstract. The following new combinations Ceratocnemum aphanoneurum, C. ballii, Eutrema angustifolium, E. sulphureum, E. watsonii, Rhamphospermum labasii, R. nigrum, and R. pubescens are proposed. As a result Rhamphospermum is resurrected, Trachystoma is reduced to synonymy of Ceratocnemum, and Sinapis becomes dispecific. Keywords: Brassicaceae, Ceratocnmum, cruciferae, Eutrema, Rhamphospermum, Sinapis, Trachystoma The present study is the first in a series of forthcoming of the boundaries of various genera in light of molecular publications aimed to update the generic assignments of data published so far. It deals with three species each of Brassicaceae species and infraspecific taxa to make these North African Trachystoma O.E. Schulz and Himalayan names available for the World Flora Online project in Pegaeophyton Hayek & Hand.-Mazz., and five species of progress. The study is based on the critical re-examination Eurasian–North African Sinapis L. EUTREMA–PEGAEOPHYTON The latest revision of Pegaeophyton (Al-Shehbaz, 2000) The three remaining species of Pegaeophyton dealt with recognized seven species restricted almost exclusively here were not included in any molecular studies because to the Himalayan region. Most recently, Hao et al. (2017) each is known only from the holotype sheet. However, their conducted extensive molecular phylogenetic studies on transfer to Eutrema hardly expands its generic limits, except Eutrema r. Br., and their data strongly supported the transfer for the development of a gamosepalous calyx in E. watsonii. of three of them, including the generic type P. scapiflorum Gamosepaly is rare in the family and has been reported in (Hook. -
A Comprehensive Analysis of RALF Proteins in Green Plants Suggests There Are Two Distinct Functional Groups
ORIGINAL RESEARCH published: 24 January 2017 doi: 10.3389/fpls.2017.00037 A Comprehensive Analysis of RALF Proteins in Green Plants Suggests There Are Two Distinct Functional Groups Liam Campbell and Simon R. Turner * Faculty of Biology, Medicine and Health, School of Biological Science, University of Manchester, Manchester, UK Rapid Alkalinization Factors (RALFs) are small, cysteine-rich peptides known to be involved in various aspects of plant development and growth. Although RALF peptides have been identified within many species, a single wide-ranging phylogenetic analysis of the family across the plant kingdom has not yet been undertaken. Here, we identified RALF proteins from 51 plant species that represent a variety of land plant lineages. The inferred evolutionary history of the 795 identified RALFs suggests that the family has diverged into four major clades. We found that much of the variation across the family exists within the mature peptide region, suggesting clade-specific functional Edited by: diversification. Clades I, II, and III contain the features that have been identified as Madelaine Elisabeth Bartlett, University of Massachusetts Amherst, important for RALF activity, including the RRXL cleavage site and the YISY motif required USA for receptor binding. In contrast, members of clades IV that represent a third of the total Reviewed by: dataset, is highly diverged and lacks these features that are typical of RALFs. Members of Tatiana Arias, The Corporation for Biological clade IV also exhibit distinct expression patterns and physico-chemical properties. These Research, Colombia differences suggest a functional divergence of clades and consequently, we propose Ive De Smet, that the peptides within clade IV are not true RALFs, but are more accurately described Flanders Institute for Biotechnology, Belgium as RALF-related peptides. -
Flavonoid and Phenolic Acids Content and in Vitro Study of the Potential Anti-Aging Properties of Eutrema Japonicum (Miq.) Koidz Cultivated in Wasabi Farm Poland
International Journal of Molecular Sciences Article Flavonoid and Phenolic Acids Content and In Vitro Study of the Potential Anti-Aging Properties of Eutrema japonicum (Miq.) Koidz Cultivated in Wasabi Farm Poland Katarzyna Szewczyk 1,* , Wioleta Pietrzak 1 , Katarzyna Klimek 2 , Małgorzata Miazga-Karska 2 , Agnieszka Firlej 3, Marek Flisi ´nski 3 and Anna Grzywa-Celi ´nska 4 1 Department of Pharmaceutical Botany, Medical University of Lublin, 1 Chod´zkiStr., 20-093 Lublin, Poland; [email protected] 2 Department of Biochemistry and Biotechnology, Medical University of Lublin, 1 Chod´zkiStr., 20-093 Lublin, Poland; [email protected] (K.K.); [email protected] (M.M.-K.) 3 Wasabi Farm Poland, 5B Słoneczna Str. 26-630 Jedlnia-Letnisko, Poland; [email protected] (A.F.); marek.fl[email protected] (M.F.) 4 Chair and Department of Pneumonology, Oncology and Allergology, Medical University of Lublin, 8 Jaczewskiego Str., 20-090 Lublin, Poland; [email protected] * Correspondence: [email protected]; Tel.: +48-814-487-064 Abstract: Skin aging is a natural, unavoidable, and complex process caused by oxidative stress. As a consequence, it leads to an increase in the activation of extracellular matrix disruption enzymes and Citation: Szewczyk, K.; Pietrzak, W.; DNA damage. The search for natural sources that inhibit these mechanisms can be a good approach Klimek, K.; Miazga-Karska, M.; Firlej, to prevent skin aging. The purpose of our study was to evaluate the composition of flavonoids A.; Flisi´nski,M.; Grzywa-Celi´nska,A. and phenolic acids in the extracts obtained from the flowers, roots, and leaves of Eutrema japonicum Flavonoid and Phenolic Acids cultivated in Poland. -
Eutrema Bulbiferum (Brassicaceae), a New Species with Bulbils from Hunan, China
Phytotaxa 219 (3): 233–242 ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ PHYTOTAXA Copyright © 2015 Magnolia Press Article ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.219.3.3 Eutrema bulbiferum (Brassicaceae), a new species with bulbils from Hunan, China YAN XIAO1, 2, 3, CHUN LI1, 2, TUNG-YU HSIEH1, 2, 4, DAI-KE TIAN1, 2, *, JIAN-JUN ZHOU5, DAI-GUI ZHANG3 & GONG-XI CHEN3,* 1 Shanghai Chenshan Plant Science Research Center, Chinese Academy of Sciences, 3888 Chenhua Road, Songjiang, Shanghai 201602, China. 2 Shanghai Key Laboratory of Plant Functional Genomics and Resources, Shanghai Chenshan Botanical Garden, 3888 Chenhua Road, Songjiang, Shanghai 201602, China. 3 Hunan Key Laboratory of Plant Resources Conservation and Utilization, Jishou University, Jishou, Hunan 416000, China. 4 Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Xuhui, Shanghai 200031, China. 5 College of Forestry, Central South University of Forestry and Technology, Changsha, Hunan 410004, China. * Corresponding author, e-mail: [email protected]; [email protected] Abstract Eutrema bulbiferum, a unique new species of Brassicaceae found in the limestone areas of Longshan and Jishou, Hunan, China, is described and illustrated. This species is most similar to E. tenue and E. yunnanense, but can be easily distinguished by its rosulate fleshy bulbils in the leaf axil or near the stem base, fewer ovules per ovary, slightly 4-angled short wand-like silique, and bended silique apex with a beak. E. bulbiferum is categorized into Eutrema by phylogenetic analysis based on the nuclear internal transcribed spacer (ITS). It is also clearly separated from E. -
The Reference Genome of the Halophytic Plant Eutrema Salsugineum
ORIGINAL RESEARCH ARTICLE published: 21 March 2013 doi: 10.3389/fpls.2013.00046 The reference genome of the halophytic plant Eutrema salsugineum RuolinYang 1†, David E. Jarvis 1†, Hao Chen1, Mark A. Beilstein1, Jane Grimwood 2,3, Jerry Jenkins 2,3, ShengQiang Shu 2, Simon Prochnik 2, Mingming Xin1, Chuang Ma1, Jeremy Schmutz 2,3, Rod A. Wing 1, Thomas Mitchell-Olds 4, Karen S. Schumaker 1* and Xiangfeng Wang 1* 1 School of Plant Sciences, University of Arizona, Tucson, AZ, USA 2 Department of Energy Joint Genome Institute, Walnut Creek, CA, USA 3 HudsonAlpha Institute of Biotechnology, Huntsville, AL, USA 4 Department of Biology, Duke University, Durham, NC, USA Edited by: Halophytes are plants that can naturally tolerate high concentrations of salt in the soil, and Jun Yu, Beijing Institute of Genomics, their tolerance to salt stress may occur through various evolutionary and molecular mecha- China nisms. Eutrema salsugineum is a halophytic species in the Brassicaceae that can naturally Reviewed by: Jun Yu, Beijing Institute of Genomics, tolerate multiple types of abiotic stresses that typically limit crop productivity, including China extreme salinity and cold. It has been widely used as a laboratorial model for stress biol- Jingfa Xiao, Beijing institute of ogy research in plants. Here, we present the reference genome sequence (241 Mb) of E. Genomics, China salsugineum at 8× coverage sequenced using the traditional Sanger sequencing-based *Correspondence: approach with comparison to its close relative Arabidopsis thaliana. The E. salsugineum Karen S. Schumaker and Xiangfeng Wang, School of Plant Sciences, genome contains 26,531 protein-coding genes and 51.4% of its genome is composed of University of Arizona, 303 Forbes Hall, repetitive sequences that mostly reside in pericentromeric regions. -
Evolution and Diversification of the Plant Gibberellin Receptor GID1
Evolution and diversification of the plant gibberellin receptor GID1 Hideki Yoshidaa,b, Eiichi Tanimotoc, Takaaki Hiraia, Yohei Miyanoirid,e, Rie Mitania, Mayuko Kawamuraa, Mitsuhiro Takedad,f, Sayaka Takeharaa, Ko Hiranoa, Masatsune Kainoshod,g, Takashi Akagih, Makoto Matsuokaa,1, and Miyako Ueguchi-Tanakaa,1 aBioscience and Biotechnology Center, Nagoya University, Nagoya, 464-8601 Aichi, Japan; bKihara Institute for Biological Research, Yokohama City University, Yokohama, 244-0813 Kanagawa, Japan; cGraduate School of Natural Sciences, Nagoya City University, Nagoya, 467-8501 Aichi, Japan; dStructural Biology Research Center, Graduate School of Science, Nagoya University, Nagoya, 464-8601 Aichi, Japan; eResearch Center for State-of-the-Art Functional Protein Analysis, Institute for Protein Research, Osaka University, Suita, 565-0871 Osaka, Japan; fDepartment of Structural BioImaging, Faculty of Life Sciences, Kumamoto University, 862-0973 Kumamoto, Japan; gGraduate School of Science and Engineering, Tokyo Metropolitan University, Hachioji, 192-0397 Tokyo, Japan; and hGraduate School of Agriculture, Kyoto University, 606-8502 Kyoto, Japan Edited by Mark Estelle, University of California, San Diego, La Jolla, CA, and approved July 10, 2018 (received for review April 9, 2018) The plant gibberellin (GA) receptor GID1 shows sequence similarity erwort Marchantia polymorpha (5–7). Furthermore, Hirano et al. to carboxylesterase (CXE). Here, we report the molecular evolution (5) reported that GID1s in the lycophyte Selaginella moellen- of GID1 from establishment to functionally diverse forms in dorffii (SmGID1s) have unique properties in comparison with eudicots. By introducing 18 mutagenized rice GID1s into a rice angiosperm GID1s: namely, lower affinity to bioactive GAs and gid1 null mutant, we identified the amino acids crucial for higher affinity to inactive GAs (lower specificity).